rna5344, rna5344 (mRNA) Nannochloropsis gaditana

Overview
Namerna5344
Unique Namerna5344
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1178
Alignment locationCM002465.1:762022..762587 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g144.6636.mrna
Orig protein idgnl|cribi|Naga_100005g144.6636
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:762022..762587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g144gene5165Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25342.1cds5331Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5344rna5344-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5344 ID=rna5344|Name=rna5344|organism=Nannochloropsis gaditana|type=mRNA|length=1178bp
GCTCAGGCGAAAGAGCAGGAGTGGAAGTAGGGAGAGGAGAAGAGGTAGGG
GGCGAGGAGGGGAAGCAAGCAGAAGTCGGGAGCGAGGGCTGGGTGGGAGA
CAGAGAGGGTCTCCGGGGAGAAGAGAGAGGAGTGAGGGAAGCAGGAGGAG
GGGTAGAAGCGGCAGTAGCGAGGGCGAGAGGGAGCCGAGAACAGAGAGGA
GGAGTGTCAGCGAGGGCAGGATGGAGGGGAGAAGGGACAGAAGCAGTAGT
AGCGATGGCAGGAGGGAAATGAGAAGGGGTGGGAGTGGAGATCGGAGAGG
GAGGGAGAGACGAGGGGAGGGCGGCAGCAGAGGATCGCGAGGGCGACGGT
CTTCCTCCTCCTCGAGCTCCCCTGAGGCCGTGAGGGAACGAGGCAGCGGA
AGGGATCGTGAGGAGGCAGGAGGACAGGGAGGGATAGAAGGGGTGAAGGA
AGTGTGCAGTCCGGCAGACATGTCTTTTACGGCCGCCCAGCTTGCCGACC
GACTGGTGGAGGTGTACAACCAGAAGTCTTCCCGCCGTTTCGAGGCCCTG
GCCGAGTGCTTCGCCCCCGATGTCTCCCTCCGCCTCCTCAAATCAGGGGC
TACGGTCGTGAAGGGCGTGCAGGCGTTGACGGCGTCCATGCCCGCGGACT
ATGCCAAGCACACGGCCCGGGTGACGCGCCGCCTCTTCATCACCACGAGC
CTGCCCTCGGAAGACCCCTCCTTTTCGATGGACTTCTACCCCGCTGGTCA
GGGTCCGGGGATCAATGCTTTTGGGAAAGGCAACGTGAAGCTGGACACGA
TACTTGTGTTTGAAGTCAAGTCGGACGGGCGTAATGTGATAAACCAGGTC
TGGATTGCACCAGATAGGGACGGGATCGCGTCGAGGAGGGAGGACCAAGG
CGCTGTGACGGAGTTGTCAGTCCTGTCATCCAAAGCTTTTCCACAGGTGG
CTGCTGTGCTGCAAGGCCGGGTGAAAGGGAAAATTAGCTATCATATGCAT
GACTATCTTCACATGGCAACAATAAGTTGAAAAGTTGAAACATCCCGAGA
ATTTGGAGCATCCGAGATGGGGTAGGAAGGAATGGGGGTATTGGAAGCTC
CCTCTTGCGGAAGCAAAAGCAAAGCAAGGTTATCAATAACACAACAGCAC
AATCGTTCACCTTTCGAAGCTCTTCCCC
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protein sequence of rna5344

>rna5344-protein ID=rna5344-protein|Name=rna5344|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MCLPIVQIPCAIFVCSRGLQVATGCPPIGALASYLDESCPCGIRPAAFLT
HYCKPSGDLSRHIFPSTVSSKQRALLFFSWGLEQHYNERVSCPLPELASL
SGRKCQAPAGRTNKSPIPVTRGRIIQIVQGSRRTRKTFIRLKMIGDGGEL
AQSGGACWGPLGPWRRIQRHRWHVKAHKTRT
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mRNA from alignment at CM002465.1:762022..762587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5344 ID=rna5344|Name=rna5344|organism=Nannochloropsis gaditana|type=mRNA|length=566bp|location=Sequence derived from alignment at CM002465.1:762022..762587- (Nannochloropsis gaditana)
ATGTGCCTTCCGATTGTTCAAATACCGTGTGCCATTTTTGTGTGTAGCCG
TGGGCTTCAGGTTGCCACGGGCTGCCCTCCCATCGGGGCGCTAGCTTCCT
ACTTGGATGAAAGCTGTCCTTGCGGAATTCGCCCCGCGGCCTTCCTCACG
CACTATTGTAAACCCAGCGGTGACCTTTCTCGTCACATTTTCCCTTCGAC
AGTCTCGTCAAAGCAAAGGGCATTGTTGTTTTTTTCCTGGGGCCTTGAGC
AGCACTATAACGAGCGCGTGTCCTGCCCCCTCCCAGAGCTGGCATCCCTA
TCTGGCAGGAAATGTCAGGCTCCAGCGGGACGCACAAACAAGTCTCCCAT
CCCCGTCACGCGCGGTCGTATCATCCAGATCGTCCAGGGGTCAAGGCGAA
CAAGGAAGACATTCATACGCCTAAAAATGATCGGGGATGGGGGGGAGCTG
GCGCAGTCGGGTGGGGCGTGTTGGGGGCCTTTGGGTCCTTGGAGAAGGAT
ACAGCGGCACAGGTGGCACGTAAAGGCACACAAGACCCGAACGTGAAGAT
GGTGAAGAACGAGAAG
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Coding sequence (CDS) from alignment at CM002465.1:762022..762587-

>rna5344 ID=rna5344|Name=rna5344|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002465.1:762022..762587- (Nannochloropsis gaditana)
ATGTGCCTTCCGATTGTTCAAATACCGTGTGCCATTTTTGTGTGTAGCCG
TGGGCTTCAGGTTGCCACGGGCTGCCCTCCCATCGGGGCGCTAGCTTCCT
ACTTGGATGAAAGCTGTCCTTGCGGAATTCGCCCCGCGGCCTTCCTCACG
CACTATTGTAAACCCAGCGGTGACCTTTCTCGTCACATTTTCCCTTCGAC
AGTCTCGTCAAAGCAAAGGGCATTGTTGTTTTTTTCCTGGGGCCTTGAGC
AGCACTATAACGAGCGCGTGTCCTGCCCCCTCCCAGAGCTGGCATCCCTA
TCTGGCAGGAAATGTCAGGCTCCAGCGGGACGCACAAACAAGTCTCCCAT
CCCCGTCACGCGCGGTCGTATCATCCAGATCGTCCAGGGGTCAAGGCGAA
CAAGGAAGACATTCATACGCCTAAAAATGATCGGGGATGGGGGGGAGCTG
GCGCAGTCGGGTGGGGCGTGTTGGGGGCCTTTGGGTCCTTGGAGAAGGAT
ACAGCGGCACAGGTGGCACGTAAAGGCACACAAGACCCGAACGTGA
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Synonyms
Publications