rna5330, rna5330 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5330
Unique Name	rna5330
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	969
Alignment location	CM002465.1:732785..734479 +

Link to JBrowse

Properties


Property Name	Value
Product	aminopeptidase-like 1
Orig transcript id	gnl\|cribi\|Naga_100005g129.6760.mrna
Orig protein id	gnl\|cribi\|Naga_100005g129.6760
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:732785..734479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g129	gene5151	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5330	rna5330-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25466.1	cds5317	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:732785..734479+
coding sequence from alignment at CM002465.1:732785..734479+

mRNA sequence

>rna5330 ID=rna5330|Name=rna5330|organism=Nannochloropsis gaditana|type=mRNA|length=969bp
ATGGATAGCAAAATTCAGAAGAGTATAGTTTGCGTGGGCAGCTTAAATGT
GGATTTGTTTTGCTATTTGCACGACAAATTCCCAGAACCAGGTAGAACTC
TCCAAGGCTCCCACTCTGCTACATGCTGTGGGGGTAAAGGAGGCAATCAA
GCGGTCATGGCTGCACGTCTCGGTGCACCGACGTCCATGGTGGGCATGGT
GGGCAGGGACGTTTTTGGGAACACGTTGCGGGAGGCTTTGATTCACGACG
GTGTTAGCATCAAACCTCTCAGAGAAGCAGCCGACGGGACTAGCACGGGC
ACGGCGCAAATACTGGTCAACGGGCGAGGGGAGAATATGATCATCATCAC
CGCTGGTGCCAATGGAAAGCTGACGCCCACCGACGTGCAAGCTGCAGAGA
GTGATATCGCAGCAGCAGCTGTTGTAATGGTTCAGCTCGAAGTGCCCCTG
GAAGCGACCCGAGAAGCCCTCCGTCTCGCCCGGGCCCACGAGGTCTTCAG
CATTCTTAACCCCGCACCGGCCCCCCGGGGGGGGCTTGACCAGGAGCTCC
TCTCCTTGGCCTCGCTAGTTTGCCCAAATGAGACGGAGCTCGCCGTGCTC
ACCCAGAAGCCTGCCAAAACTCTGTCGGAGATAGAAGCGGCCGCGCATCG
TCTCCGGGGCATGGGTGCAGCCAGGGTGCTCGTGACGCTCGGGGAGAGAG
GCACCCTGTTGGTGACAGAAAAGGACGGCGAGGACCACGTGTTGCTGACT
CCGAGCCCGAAGGTAGAAATGGTGGTGGATACAAGTGGGGCGGGAGACTG
TTTCATCGGCAGCCTGGCGGCCTATCTGTCAAGCGGGATGGCTTTACCCC
AGGCAGTATCCAATGCCTGCGAATTAGCCTCAATCAGCGTCGGGAAGGCA
GGAACGCAAATCTCGTATCCCTACAAACATGAGCTTCCAGAACGGTTGCA
GCTACTTCATGGACTTTGA

protein sequence of rna5330

>rna5330-protein ID=rna5330-protein|Name=rna5330|organism=Nannochloropsis gaditana|type=polypeptide|length=564bp
MSLRFYALDSPELRSMEQHGHFLMLGTKVALDLCCPNLAFYVNRAVKVSS
LDATGSDPSAPLLSAMANDLTPTFDRHFCSDTWVDVDGTLVRVTLGCLPS
GEASRHNCPAKPHAATEIVKSVANGEGPLRILLALTTADHAVALGTAVAR
AFPMYSRKSNGSSSASKPPRNVEVVFNMTMEALASCTFLGGQGVNFSSDS
GSDEPGKQGEHQVFDASMTMVSRVEAMAAGIRLSARLVDAPANEMHTDAM
VEEARQVLHRLRRLNLQDSVSMTVLRGEELREKGFGGLYGVGKAAEHPPA
LVVLSLVPRANERPASTPDTLKPSVVWVGKGIVYDTGGLSIKTKTGMPGM
KRDMGGAAAILAAFEVAARLGYRKRPLHAILCLAENSVAAKATRPDDIHE
MYSGKTVEINNTDAEGRLVLGDGVAYAVQHLAPSVLVDMATLTGAQGVAT
GLRHAALYCNDERLEAAAVEVGRATGDLTHPVPYAPEFFQHEFRSSVADM
KNSVANRENAQCSCAGQFIGAQISEWLGGKGHGWIHVDMAYPVHNGERAT
GYGVNLLVGLLERL

mRNA from alignment at CM002465.1:732785..734479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5330 ID=rna5330|Name=rna5330|organism=Nannochloropsis gaditana|type=mRNA|length=1695bp|location=Sequence derived from alignment at CM002465.1:732785..734479+ (Nannochloropsis gaditana)
ATGTCGCTGCGCTTCTACGCTTTGGATTCGCCTGAACTTCGGTCCATGGA
ACAACATGGGCACTTCCTAATGCTGGGCACGAAAGTTGCTTTGGATTTAT
GCTGCCCGAACCTGGCTTTCTACGTAAACCGTGCCGTTAAGGTCTCCTCC
CTGGACGCCACAGGCTCTGACCCCTCCGCGCCTCTGCTTAGTGCCATGGC
GAACGATTTGACCCCTACCTTTGACAGGCACTTTTGTTCGGACACCTGGG
TAGATGTAGACGGCACTCTTGTCAGGGTGACCCTCGGTTGTCTTCCTTCT
GGCGAGGCGTCACGGCATAACTGCCCAGCCAAACCGCACGCTGCAACCGA
GATTGTCAAGAGCGTTGCGAACGGTGAGGGGCCTCTCCGAATCCTCCTGG
CACTGACCACAGCCGACCACGCGGTCGCCTTGGGTACGGCAGTAGCGCGG
GCATTTCCCATGTACAGTCGCAAGAgcaacggcagcagcagcgccaGCAA
GCCACCGCGAAACGTCGAGGTAGTCTTCAATATGACcatggaggccttgg
cctcctgtACTTTTTTAGGAGGTCAGGGTGTGAATTTCTCCAGCGATAGC
GGTAGTGATGAGCCCGGGAAGCAAGGGGAACACCAGGTGTTCGATGCGTC
CATGACAATGGTGAGCCGAGTAGAGGCAATGGCGGCGGGGATCCGACTGA
GCGCGCGCCTGGTCGACGCGCCTGCCAACGAGATGCACACGGACGCGATG
GTCGAAGAAGCGAGACAGGTTCTGCACCGGCTTCGACGGCTGAATTTGCA
AGACTCCGTTTCCATGACCGTgctgcggggggaggagctgagggagaagg
gcttTGGAGGACTGTACGGAGTGGGGAAGGCGGCCGAGcacccgcccgcc
ctggTGGTCCTGTCGCTAGTGCCCCGGGCCAATGAGCGCCCGGCCAGCAC
GCCCGACACGCTGAAGCCTAGTGTCGTGTGGGTGGGAAAAGGCATCGTCT
ACGACACGGGTGGGCTGAGCATCAAGACCAAGACGGGCATGCCTGGGATG
AAGCGCGACATGGGGGGGGCCGCCGCGATCTTGGCCGCATTTGAGGTGGC
GGCGCGGCTCGGGTACCGCAAGAGACCGCTCCACGCCATCCTGTGCCTGG
CGGAGAACTCCGTGGCGGCGAAGGCCACGCGCCCGGACGACATCCATGAG
ATGTATTCGGGCAAGACGGTAGAGATCAACAAcacggacgcggaggggCG
CCTGGTCTTGGGAGACGGTGTAGCGTACGCGGTGCAACACTTAGCTCCCT
CCGTGCTCGTGGATATGGCCACCCTGACGGGCGCGCAAGGCGTGGCGACG
GGGCTTCGGCACGCCGCCTTGTACTGCAACGACGagaggctggaggcggc
cgctgTGGAGGTCGGCAGAGCCACGGGGGACCTCACCCATCCTGTCCCCT
ATGCCCCCGAGTTTTTCCAGCATGAGTTCCGCTCCTCGGTTGCGGACATG
AAAAACAGCGTGGCGAACCGTGAGAACGCCCAGTGCTCGTGCGCCGGCCA
GTTCATTGGGGCGCAGATCTCGGAGTGGCTGGGCGGAAAGGGGCATGGGT
GGATCCACGTCGACATGGCGTACCCTGTGCACAATGGAGAGAGGGCCACG
GGTTACGGCGTGAATTTGCTGGTCGGTCTGTTGGAACGCCTGTGA

Coding sequence (CDS) from alignment at CM002465.1:732785..734479+

>rna5330 ID=rna5330|Name=rna5330|organism=Nannochloropsis gaditana|type=CDS|length=1695bp|location=Sequence derived from alignment at CM002465.1:732785..734479+ (Nannochloropsis gaditana)
ATGTCGCTGCGCTTCTACGCTTTGGATTCGCCTGAACTTCGGTCCATGGA
ACAACATGGGCACTTCCTAATGCTGGGCACGAAAGTTGCTTTGGATTTAT
GCTGCCCGAACCTGGCTTTCTACGTAAACCGTGCCGTTAAGGTCTCCTCC
CTGGACGCCACAGGCTCTGACCCCTCCGCGCCTCTGCTTAGTGCCATGGC
GAACGATTTGACCCCTACCTTTGACAGGCACTTTTGTTCGGACACCTGGG
TAGATGTAGACGGCACTCTTGTCAGGGTGACCCTCGGTTGTCTTCCTTCT
GGCGAGGCGTCACGGCATAACTGCCCAGCCAAACCGCACGCTGCAACCGA
GATTGTCAAGAGCGTTGCGAACGGTGAGGGGCCTCTCCGAATCCTCCTGG
CACTGACCACAGCCGACCACGCGGTCGCCTTGGGTACGGCAGTAGCGCGG
GCATTTCCCATGTACAGTCGCAAGAgcaacggcagcagcagcgccaGCAA
GCCACCGCGAAACGTCGAGGTAGTCTTCAATATGACcatggaggccttgg
cctcctgtACTTTTTTAGGAGGTCAGGGTGTGAATTTCTCCAGCGATAGC
GGTAGTGATGAGCCCGGGAAGCAAGGGGAACACCAGGTGTTCGATGCGTC
CATGACAATGGTGAGCCGAGTAGAGGCAATGGCGGCGGGGATCCGACTGA
GCGCGCGCCTGGTCGACGCGCCTGCCAACGAGATGCACACGGACGCGATG
GTCGAAGAAGCGAGACAGGTTCTGCACCGGCTTCGACGGCTGAATTTGCA
AGACTCCGTTTCCATGACCGTgctgcggggggaggagctgagggagaagg
gcttTGGAGGACTGTACGGAGTGGGGAAGGCGGCCGAGcacccgcccgcc
ctggTGGTCCTGTCGCTAGTGCCCCGGGCCAATGAGCGCCCGGCCAGCAC
GCCCGACACGCTGAAGCCTAGTGTCGTGTGGGTGGGAAAAGGCATCGTCT
ACGACACGGGTGGGCTGAGCATCAAGACCAAGACGGGCATGCCTGGGATG
AAGCGCGACATGGGGGGGGCCGCCGCGATCTTGGCCGCATTTGAGGTGGC
GGCGCGGCTCGGGTACCGCAAGAGACCGCTCCACGCCATCCTGTGCCTGG
CGGAGAACTCCGTGGCGGCGAAGGCCACGCGCCCGGACGACATCCATGAG
ATGTATTCGGGCAAGACGGTAGAGATCAACAAcacggacgcggaggggCG
CCTGGTCTTGGGAGACGGTGTAGCGTACGCGGTGCAACACTTAGCTCCCT
CCGTGCTCGTGGATATGGCCACCCTGACGGGCGCGCAAGGCGTGGCGACG
GGGCTTCGGCACGCCGCCTTGTACTGCAACGACGagaggctggaggcggc
cgctgTGGAGGTCGGCAGAGCCACGGGGGACCTCACCCATCCTGTCCCCT
ATGCCCCCGAGTTTTTCCAGCATGAGTTCCGCTCCTCGGTTGCGGACATG
AAAAACAGCGTGGCGAACCGTGAGAACGCCCAGTGCTCGTGCGCCGGCCA
GTTCATTGGGGCGCAGATCTCGGAGTGGCTGGGCGGAAAGGGGCATGGGT
GGATCCACGTCGACATGGCGTACCCTGTGCACAATGGAGAGAGGGCCACG
GGTTACGGCGTGAATTTGCTGGTCGGTCTGTTGGAACGCCTGTGA

Synonyms

Publications