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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100005g107.6639.mrna |
| Orig protein id | gnl|cribi|Naga_100005g107.6639 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:684877..686113 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5313 ID=rna5313|Name=rna5313|organism=Nannochloropsis gaditana|type=mRNA|length=6020bp
GGCACTTGCCGGGAATGCTCAGGTGGTGGAAATGTTGTCCACTGCGTGCT
CATTTCATTGCTCGTTCCCTCTTTCCTTGCGGGGTGATGCAGATGGAGCT
TATTAATTAAACAGCGGCTTACTCATAAGAAACTGCGGAGCAGGGATACT
TCTAGGATCATGGAGACAGCCAAACACGCAAAGGAAGAGATGTGTATTAT
TAGCAAGGAGGTGGCCAACGTCATGGCCGTGCTGTCCCTTCGCGCCGACC
CCATGATCGAGGGCCCGATGAAGAGACAACACCTCGGCTCCTCTCCCTTC
TCCACAAGTTCTCCTTCCACTTCCTCGCTTTCCTCCTCATCCCCTTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCCCTTTCT
CCCTTTCCTCCTCCTCCCCTTTCTCCCTTTCCTCCTCCTCCCCATCGTGT
TCCTCTTCAATCCACCTCTACCGTTTATCCATTGAAATCCAGTCTCTGGA
ATGGGATGCAGAGGCCCGTACATTGCATCTCTCCTTAAATCCCGACGTGG
CATTGAATGCAGCAAGCGCCTCCTCCTTCCCTACCGAAGTCCTCATTCGT
GCCCAGCAGCTCCTCCTCGCTCCCCCTTTGGAGCTCCAGCTCTTCTTCCC
CGAGTCTACGGCCAAGGCGCCCTTCTGCTTCTCCAGCACAGACGCCGGTG
CCATTGTCGCGCGCCGTGCCAACGAGGCCCTGCAGCCCCTGAAGGAGGCC
TCCTTGCTCCAGGCTCTCTGCCTCCTCACCGCCCTCGTCAAGGATGAGGC
CGGGGCCGTATGGCCGGAGAACGATCCGTGTTGGCGACGCGCGTGGGCGG
AGAGGGTGGTGGCGCGTGTGAGGGAGCAGGGCCTCGCGGTCGACCTCAGG
CTCTCCTTGCTGAGCATGAGCAAGGCACAGAGCGCCACGCTTAGGCCGCC
CGTGCCCAGGTTTTTCTTCGAGAGCGAGGGGGGTTATGCCGTCGATAGGA
CTGTCCTGGTCTCGGCGGTCAACGCGGTTCCTCCCCTGCACGTCATCTGT
GGAGGAGGGGGCGGGAGGGGCGGCGGCCGGGGCGATGGGGCCCGTGGGGA
AGGAGACAGGCTGGAGGGCGTAGAGGCCGTGGAAAGCTTGCCCTTTCCGA
GCTGTCTTGTGCTGCAGTATTTGCTGTTCCGGGAGCGTGTCACGTTGATG
AATTCGTCGGATGCCGTGGCCCCGGGGCCGCGAGGGCGGAGGGGCCACGA
GCACGACCAGGGCGCGGCTGGCGGCGTGGAAGGAGGGAAGGAGGACGAGG
AGTGGGAGGGAGAGAAAAGGCAGGCTCATGCCCTAGATGCCCTTGCGGGA
CTGCCGTCACCGGGCGGGCCAACGCCGTCCCAAGGCGGGAGAGAGACCGG
GCTCGGGCCCAGTGGCGGTCCCTTGCGCCGGTTTCTGGCCTCAGCCTTTT
TCGGTCCGCGAGGAGATCGCCCCTGCTTCATCTTCCCCCTCCGCCACGCC
CCCAACGCCCGCTTCGACGCCCTCGCTAGGCAGCACGGCACGCAGTGGGG
CTTCCATGGATCTTCTCCGGGTAGCTTTCATTCCATCGTCTCCTGGGGCT
TGCGGTCTTTGAGTGGCACCCGGGGAATGCGCAACGGCGCCGCATTCGGG
GACGGCGTCTACGTGGCCTCTAAGTGTGAGGTCGCCAGGAATTTCGGGAG
CTGGGGCGTCCCTGTGTGGAAGCACAGTCAATTTGGCAACAGAGCGACTG
CGTCAAGCGCGGCGGCCGCCTCGGGTGCCCCCCCCGTGTTTGCCTACCAG
GTCATCGCCCTCTGCGAAATCATTGACATGCCCGAATATCGATGCGGCTT
TCCGGGCTCCGATGGAAGTGCTGTTGCTGTCACAGCCGCTCGTCAGCGTT
CAGAGCCTTCCACCTCCACTCCCGTCTCATCTCCGACACGGGAAGTCAAC
CGTGACCGCAGTGAGTACTGGGTGGTGGCGAATGACTCCCACCTGGTCGT
GCGCGCCCTTCTTCTCTTCAAGGATCCAGCCATCCTCCCAAATGCTCCCA
CTTTTCCTCTTTCCACAAGAACGGTGAGGCAGCGTCGTGGCAGTCCGGGC
GCTGCTGCTAACCTCCCCCCCCAGCCTTCTCCCCCCCTTCCCCGTGCTCC
AGTTGCCCGCAGGCAACTTTACCTGCACTTTGTCCTTGGAGTCATGAGGG
TAATACTTATGGGAACGGCCTTCATTATATTTTTAGAGACAGTCGAGAAA
TTGTTGGCGCGTCGAGAAAAAAGCCTTGGTGGGGGAAGAGGGAGGAGGGC
AGCGTAGGGCGAGTCGGAGAAGAAGCAAGAAAAATTTGAGCGATGTGCGT
GAAGATGAACTTTTTCTTCTCCAAACCCTCAGAAACTTGACGAGACTGAC
CAACGCCATGCCCCTTGCGGTTTCACGACTCACATTGTATTTCATGCCCG
GTCGTCTATTTATCAGAGTGCTGCGAGAAGGAGTCGTGTGGGAGCAGGCA
ATGGTGCGGTTTCTGGCGGGCTTCGGAGGTACCTCGCCCCCCCTCGCCTT
GCTGCTGTCCTACCTGTCCTTCCTGTTTTCACCCCAAGTAGATGGATTTT
CGAAGCCTCCTCAGCAGCTTTGGTGCGCTACGCACTCTTGGACGCGATCT
AAGAGGGCATATGTTGCGAAAAGACCCAAATTGCTGGTAGCACAGGCAGA
GAGCGAAGGGAGCAAGGAGGGCTGGTGGAAGCCTCGGCCGGAGTGGCGAG
ATGACGATCCAATAGACGTCCCAGGCCAAGCGGCATCAGAGCTACCCGAC
AGTTTTGACGACGCCCTTAATATTGCTGTGGAGTCGGCACAGCAGGCCTT
CGCTGCGGGCAGGAACCGCGTGCGCATCGATTTCGATACTACCGCCGGGG
ACCTCACCTACACGACGCTCAAAAATTCCATCCCCCTCGCGCTGGCCCTC
GCGCAATATCTAGGCAAGGAGGTGATGGAAGAGGACAAGGTGGTGATGGA
TGCGGAGGGGAAGAAGGCGGGGTACGAGGGAAAGCGACTGGTGGTGGTCT
TCCCGGACACGGGCTCGGCCGTGTGGGTTGAGCAAGATTGGAGAGCAGGC
AAGCTGGGAAGCTCCGCCAAAGTGCCCCCCTCGGTGCGATGCGCCGCATT
TCCCAATGAAATGGTGGACTCGGCCCGCGACTCCGCGTTTCTGATCGTCT
GCCCCCGGGCCTCGGAGGCGCCCGCCACGTACGAGCTCCTCACCTCCCTC
CCCGCGGACGCCAAGGTCGTGCTTTTGAACCCCGAGTTGATAAACGCGGA
GGTAGTGGGCTTCGGTATGGCGGGCCGTCGCATCCGAGACGAGGTGGAGA
ACAAATTCGAGCGGGCGTACTACCTGAAGACGCTGAGCTGGGGGGCCTTG
ACTCGGCGGTGGCCCGGGGGGTACTCGATCTGGATGGAGGACGAGGGCGA
GGAGGAGGGCTACCGGCTCCTGAAGACTGTGGGCCGTTTCCCGTCCCTGG
ATGAGATGGAAGACATCCGAGACGCCGCCGACATGGAGGGAGGCGAGAAC
CGAGGCGTGTTGTCGGGGCTAGCGCGCTTCATCGATTCGTTCAAGCGCAT
GTGAGAGCTTGGAGAAAGGGCGGGAGGGGCCGCGCGCTGAGCCCGATGGG
GTGGGAGCTGGAGCGGATAATTTGACAAAAGAAATGCAGCGAAAAAGACC
AGACTCCAAACGAGAGGAGTGCATGGGAGTACTGTCTGCGTGACAACAAG
AGGCAGTGGCTGGGCTCGACAAATATTGTGGTGTTCCTTGAGATTGATTG
ACACGTCGAATCTGTCAAACTGCCACGCCGGGGCGTCTTCATGCTTTAAT
TAACCCCTCAGCGACGGGCACACTGACCCTCAGTGCCTTGGAAGACCCCT
CACACGTGACGATGCCTGCGCTCACGGGGAAATTCGTGCATGCCGGCCCA
AACCATCTTCTCTCACAGACACCATAATTGAGACAGCCCACAACACTTCT
CCTTTGTCACTCATTTCTTTGCCCTCTTCTCCAGCCCCAGATGGGTGTCC
GCATCGTTCACAAGTACCCATTTGCCCTCCGCGTCCTCCTCGGCACTCAG
GGGAACCCGGTCTAAGAGCTGCACAATGCGGTACATGGAGCCATCGTATT
CCACGTCACAGATAGGATCCACCCGGACGCTGTCATCCTTGCGTGCTGCT
TCTTGACGCGCCATCTGCGCCGTCGCTGCCTCTTCTCTTTCATCATCTTC
CTCCTCGCTGTCGTACTCGTCGTCACTGTCCTCCTCCTCCTCCCCTTCCT
CCAACTCCTCGTCATCAAACCAGTCAGGCTCCCCCGCGATAGTCAAGAAT
CCAGCGGTGTGTAGAATCTCATAGCCCTTATTGGTGAAGTAATCATCCAA
TTGATAGAACATGCCCTCAGCCAATGCACTTGAGGGGTCGATGGGCCGAC
CCCCTGAATCCATGAGCACCATGGGGCTGTCCACTGGCGTGCCCAAACAA
TATCGCTTTCCGTCCTGCCGCAAGTATGCAATCATCGTCGTGTTTATGCT
TCGTCCGTGTCCGTCCTCCATCAAAATGTACTCAGGCTTCCTCCCTGCCA
GAGCCTCCACGACAGGCTCCGATGCTGAAGCGAGGACGGCCGAGGAGGGC
CGTAGTGGCTCCCGAGGTCTACCCATGCCAGGCGCAACAGGCACCAAGAA
TGCCTGGACAAGGGAGCAGGAGACTAAGCTGGTCAAGGCACGCAGCTTCA
TATTTCCCAGTGGAGGAGATACGTCTTTTTGTTGGTTTGTGCGAGTGTCA
GGAAGGCTTTCAGGTGGAAAAGCTTCAAGTATCTTGCGAATTTTAATGCA
CCTGCCACTGGACAGCACAGTTGTATCGAAATGTAGTTTAACGAGAGCAA
ATCAGTACATGGATGAATACTAGCTGTGAAATCGACAATATAACCCAGAA
AATCGACGTAAAAATGGTGCAAGTGCACGCCCCCCCCCCCCTTCCGTGGA
TCTCAACCCGCGACGCATTCCCTCGTCGCCGCTCGCTCCATCGGCGGCCG
TTACCCCCACACGCTTTACCAAAAGCAACCAATTTTACCAGCACATTGCA
CAGAAACAGATCCAATCGCTCGGCATATTTTTTAAAGCAGATTATTTCAT
TACTCAACTTAGGCATTCAGAGCTGAAATGGAAAGGGTACGTACCGCGGC
TCATTTCCCCCCCCCCAACATACAAATGTATGTGTCCAAGACGAGCATAT
GATGGACCCGTATTTATTTTTGTTTCTTTCTCTACTGTAACCTATTTTTA
ATACCGCTGTATACATCGATATGCTTAGAGTTTTTGGCAAAAAGAAGGCG
AGCATGCCTTTGATCCATATGGACGAGAGCTTGTGAACGCCAGAGCTCAA
TTTTTGGCCACCGCAGAGGACACTGATCCAATAACTGCACCGTCTTACGA
TGACGTAGTTTATATTCCAAACGATCCAGCGGCAGATTGGGCAGGTCTTG
TGAAGAAAAGGGGCAGTAAAGTACATTTTCCCATGACGCAGAGCTCAGTC
CTTGTAGCACACCCTGTTGGTGGGTTGACAGGTGGCGGCAGCCTGGGTAC
AGGAAAACATCCCATCCCTCCGTCCGTTACGTCTTCTTATAAAAGACGAG
CATCCGATTCCTCAGTATCTGCCTCCACTTTCGCGATCTGTCGTCAAGAG
TGTGATAAGAACTCGAGCTGGAAAACGAGCTACGAGGCTTTTGCAACAAA
TCAGCCCACACCACGGGACGTCATGAACCCTCTTAAATTGCGTCCTAGAA
GATTTGAAAAGCAGCGGCATGGGCTTTCTAAGGATGTATTTGAGGAGAAA
AAGCACAATGAGAGCCCTTCTAACCTACCGGTATGCCCTGTGACAAACGA
GTGCAGTGACACCCTAGTAGGCTTCCGAGCCCCGCCTGCCTTTCGACGGA
ATGGGACCTATTTGAGCGGAATAGGGAAAAAGTTACTGGAAGACAAGTAT
GTGCCTTAAGCCTTTTCTTT back to topprotein sequence of rna5313 >rna5313-protein ID=rna5313-protein|Name=rna5313|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MKLRALTSLVSCSLVQAFLVPVAPGMGRPREPLRPSSAVLASASEPVVEA
LAGRKPEYILMEDGHGRSINTTMIAYLRQDGKRYCLGTPVDSPMVLMDSG
GRPIDPSSALAEGMFYQLDDYFTNKGYEILHTAGFLTIAGEPDWFDDEEL
EEGEEEEDSDDEYDSEEEDDEREEAATAQMARQEAARKDDSVRVDPICDV
EYDGSMYRIVQLLDRVPLSAEEDAEGKWVLVNDADTHLGLEKRAKK back to topmRNA from alignment at CM002465.1:684877..686113+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5313 ID=rna5313|Name=rna5313|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp|location=Sequence derived from alignment at CM002465.1:684877..686113+ (Nannochloropsis gaditana)
ACGTCGATTTTCTGGGTTATATTGTCGATTTCACAGCTAGTATTCATCCA
TGTACTGATTTGCTCTCGTTAAACTACATTTCGATACAACTGTGCTGTCC
AGTGGCAGGTGCATTAAAATTCGCAAGATACTTGAAGCTTTTCCACCTGA
AAGCCTTCCTGACACTCGCACAAACCAACAAAAAGACGTATCTCCTCCAC
TGGGAAATATGAAGCTGCGTGCCTTGACCAGCTTagtctcctgctccctt
gTCCAGGCATTCTTGGTGCCTGTTGCGCCTGGCATGGGTAGACCTCGGGA
GCCACTAcggccctcctcggccgtCCTCGCTTCAGCATCGGAGCCTGTCG
TGGAGGCtctggcagggaggaagcctgAGTACATTTTGATGGAGGACGGA
CACGGACGAAGCATAAACACGACGATGATTGCATACTTGCGGCAGGACGG
AAAGCGATATTGTTTGGGCACGCCAGTGGACAGCCCCATGGTGCTCATGG
ATTCAGGGGGTCGGCCCATCGACCCCTCAAGTGCATTGGCTGAGGGCATG
TTCTATCAATTGGATGATTACTTCACCAATAAGGGCTATGAGATTCTACA
CACCGCTGGATTCTTGACTATCGCGGGGGAGCCTGACTGGTTTGATGacg
aggagttggaggaaggggaggaggaggaggacagtgaCGACGAGTAcgac
agcgaggaggaagatgatgaaagagaagaggcagCGACGGCGCAGATGGC
GCGTCAAGAAGCAGCACGCAAGGATGACAGCGTCCGGGTGGATCCTATCT
GTGACGTGGAATACGATGGCTCCATGTACCGCATTGTGCAGCTCTTAGAC
CGGGTTCCCCTGagtgccgaggaggacgcggagggcaAATGGGTACTTGT
GAACGATGCGGACACCCATCTGGGgctggagaagagggcaaagAAATGAG
TGACAAAGGAGAAGTGTTGTGGGCTGTCTCAATTATGGTGTCTGTGAGAG
AAGATGGTTTGGGCCGGCATGCACGAATTTCCCCGTGAGCGCAGGCATCG
TCACGTGTGAGGGGTCTTCCAAGGCACTGAGGGTCAGTGTGCCCGTCGCT
GAGGGGTTAATTAAAGCATGAAGACGCCCCGGCGTGGCAGTTTGACAGAT
TCGACGTGTCAATCAATCTCAAGGAACACCACAATATTTGTCGAGCCCAG
CCACTGCCTCTTGTTGTCACGCAGACAGTACTCCCAT back to topCoding sequence (CDS) from alignment at CM002465.1:684877..686113+ >rna5313 ID=rna5313|Name=rna5313|organism=Nannochloropsis gaditana|type=CDS|length=741bp|location=Sequence derived from alignment at CM002465.1:684877..686113+ (Nannochloropsis gaditana)
ATGAAGCTGCGTGCCTTGACCAGCTTagtctcctgctcccttgTCCAGGC
ATTCTTGGTGCCTGTTGCGCCTGGCATGGGTAGACCTCGGGAGCCACTAc
ggccctcctcggccgtCCTCGCTTCAGCATCGGAGCCTGTCGTGGAGGCt
ctggcagggaggaagcctgAGTACATTTTGATGGAGGACGGACACGGACG
AAGCATAAACACGACGATGATTGCATACTTGCGGCAGGACGGAAAGCGAT
ATTGTTTGGGCACGCCAGTGGACAGCCCCATGGTGCTCATGGATTCAGGG
GGTCGGCCCATCGACCCCTCAAGTGCATTGGCTGAGGGCATGTTCTATCA
ATTGGATGATTACTTCACCAATAAGGGCTATGAGATTCTACACACCGCTG
GATTCTTGACTATCGCGGGGGAGCCTGACTGGTTTGATGacgaggagttg
gaggaaggggaggaggaggaggacagtgaCGACGAGTAcgacagcgagga
ggaagatgatgaaagagaagaggcagCGACGGCGCAGATGGCGCGTCAAG
AAGCAGCACGCAAGGATGACAGCGTCCGGGTGGATCCTATCTGTGACGTG
GAATACGATGGCTCCATGTACCGCATTGTGCAGCTCTTAGACCGGGTTCC
CCTGagtgccgaggaggacgcggagggcaAATGGGTACTTGTGAACGATG
CGGACACCCATCTGGGgctggagaagagggcaaagAAATGA back to top
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