rna5264, rna5264 (mRNA) Nannochloropsis gaditana

Overview
Namerna5264
Unique Namerna5264
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1023
Alignment locationCM002465.1:563331..565150 +

Link to JBrowse

Properties
Property NameValue
Productfolate biopterin transporter
Orig transcript idgnl|cribi|Naga_100005g53.6672.mrna
Orig protein idgnl|cribi|Naga_100005g53.6672
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:563331..565150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g53gene5084Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5264rna5264-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25378.1cds5251Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5264 ID=rna5264|Name=rna5264|organism=Nannochloropsis gaditana|type=mRNA|length=1023bp
ATGTCTTATATCGCAGGCCGACGCGCTTCTAGCCGCCACTCCGTCTCCTT
CACGTCAAAGATGCAGACTCCTATCAGCAATGTTCATGCCAAGATGATGG
CCTTGTCTGAGAAGAAGGCCAAAACTTGGAACGATGTTCTCATTGATTGG
ATGGCAGGCGGAATCGCAGCTGGGGTCTCCAAAACGGCGGTGGCTCCTAT
CGAACGTGTCAAGCTCTTGCTGCAGACACAAGATGCCAACCCCAAGATTG
CCTCCGGGGAGGTGCCCCGCTATTCGGGCGTGGTGAACGTGTTGGTGCGC
GTGTCAAAAGAACAGGGCGTCAGTGCCCTGTGGCGCGGAAACGCGGCAAA
TGTCTTGCGTTATTTTCCTACCCAAGCGTTCAACTTCGCGTTTAAGGATA
CCTTTAAGGCCATGTTCCCCAAGTACGACCCGCAGACTCAGTTTTGGGCT
TTCTTTGGCTCAAACATGGCAGCGGGCGGTCTTGCCGGTGCAGCTTCCCT
GCTGATCGTCTACCCGCTTGATTTTGCACGAACTCGTCTCGCAGCGGATC
TCGGTAAAGATGGCGCCCGCGAGTTCAACGGCCTGCTGGATTGCCTGGGG
AAGGTCGCCAAGGCGAGCGGGCCTCTCGCCCTCTACCAGGGATTCGGTGT
GTCCGTGCAGGGCATCATTGTCTACCGCGGGGCTTACTTCGGACTCTATG
ATACTGCCAAGGGCGCGCTCTTCAAGGACGAGAAGAACGCTGGCATCCTC
TACCGGTGGGCAATTGCGCAGGCCGTGACGGCGGCGGCGGGTATCGTCTC
GTATCCACTTGATACTATTCGCCGTCGCCTCATGATGCAGGCCGGCGGAA
AAAAACTGTACGATGGAACACTTGACTGCATTAGTAAGATCATCAAAAAT
GAGGGACCCAAGGCGTTCTTTAAGGGTGCCTGGTCTAACGTTCTTCGCGG
GGCAGGCGGAGCTCTTGTCCTGGTCTTCTACGACGAGATCAAGAAGGCTC
TCGGTGGCAAGTCATCTGATTAA
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protein sequence of rna5264

>rna5264-protein ID=rna5264-protein|Name=rna5264|organism=Nannochloropsis gaditana|type=polypeptide|length=531bp
MKEPFILTRPQDTRRVMIYLAFFLLLPYVTGFRPSSPAVSFRNRYVCFRS
CCATRVVPLSWKNGLDKKRVAGTRMLLQGEDASNTPSTGLKWNQAIRNNL
FLGVEPSPDVTAILVVYFVQGAIGLARLATTFYLKDDLHLSPAQSAALMG
IFTAPWLLKPLYGFLSDGFPLGGYRRRSYLAISGLLGAVSYFVLAFPGLV
DSVAAATLACTFGSLSVAVSDVVADSIVVEKIRTESPAGNLKLAGGLQSL
CWGSSAVGGIVSAYFSGFLLEHLGTRAVFGITAILPLLVTLISMGIQERR
VTVDYSHSWNRARDQVAALWSAVSQKSVYLPLFFLILWQGSPSSDSAFFY
FLTGELGMGPEFLGRVRLGTSIASLAGVWLYQRYLREVPISKVLLWTTLA
SVPLGLTQLVLVYHINAGLGIPDEVFTFGDSVVLTVLGQIAFMPTLVLAA
RLCPPGIEGTLFATLMSVFNGAGALGTELGALLTSALGVTERNFENLGLL
IIICNLSSLLSLPFLSLLGNEDDKVEVDSGT
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mRNA from alignment at CM002465.1:563331..565150+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5264 ID=rna5264|Name=rna5264|organism=Nannochloropsis gaditana|type=mRNA|length=1820bp|location=Sequence derived from alignment at CM002465.1:563331..565150+ (Nannochloropsis gaditana)
ATGAAGGAGCCGTTTATTTTAACAAGACCACAGGACACTAGGAGAGTCAT
GATTTATCTTGCATTCTTTCTACTTCTTCCGTACGTTACGGGATTTCGAC
CTTCGTCTCCTGCGGTCAGTTTTCGGAACCGGTATGTCTGTTTTCGCTCT
TGCTGCGCAACCAGGGTGGTGCCTTTGTCATGGAAGAATGGCTTAGACAA
GAAACGAGTCgcggggacgaggatgtTACtacagggggaggatgcaTCAA
ATACCCCGTCCACTGGACTCAAGTGGAACCAGGCTATACGAAATAACCTG
TTTTTGGGCGTGGAGCCATCCCCAGACGTGACAGCAATTTTGGTGGTGTA
TTTCGTGCAGGGTGCTATTGGCTTGGCTCGCCTTGCGACAACATTTTATC
TGAAGGACGATCTCCATCTCTCTCCGGCCCAGTCAGCGGCCCTCATGGGA
ATTTTTACGGCCCCATGGCTCCTGAAGCCTTTATACGGCTTTCTTTCTGA
CGGGTTTCCCTTGGGCGGTTATCGACGGCGCTCTTATCTCGCCATCTCCG
GCTTACTAGGAGCGGTGTCATACTTCGTCCTGGCATTTCCTGGGCTGGTT
GACTCTGTGGCTGCGGCGACGTTAGCATGTACGTTCGGCTCTTTGTCCGT
GGCGGTCAGTGACGTTGTGGCTGACTCAATTGTAGTTGAGAAAATTCGTA
CGGAAAGTCCCGCAGGCAACCTCAAGCTTGCCGGAGGATTGCAGTCCTTG
TGCTGGGGAAGCTCTGCCGTGGGAGGCATCGTCAGTGCCTATTTCTCGGG
ATTTCTGCTCGAGCATCTTGGCACACGGGCAGTTTTCGGGATCACTGCCA
TCTTGCCGCTCCTGGTAACGCTTATTTCCATGGGCATCCAGGAAAGACGC
GTCACAGTGGACTACTCGCACTCATGGAACAGGGCGAGGGACCAAGTTGC
TGCGCTGTGGTCTGCGGTCTCCCAGAAGTCCGTCTACTtgcctctctttt
tcctgaTACTGTGGCAAGGAAGCCCTTCAAGCGACTCCGCATTTTTCTAC
TTTTTAACCGGTGAGCTTGGCATGGGACCCGAGTTCCTAGGCCGCGTGCG
CCTGGGCACCAGCATCGCCTCTCTAGCTGGAGTCTGGCTGTACCAGCGCT
ACCTCCGGGAGGTGCCTATTTCCAAAGTTCTGCTCTGGACGACGCTTGCT
TCGGTTCCGGTTCGTGTTGACGGGCAGGATATATTATGAGCGACAAATTG
ACTACTGTCTCATGCTCCCCTTCTTGTCAAGTGTATGTGTTTTGGGGATG
CAGAACTTCTTGACAGCCTGCGTTTAGTCAACAGTCTCTTTTAACTCTTG
TAAACGACATTTACAAGCCGTGATGCGCTTCAGATCCCTAATTCCGTTTT
CCTGTTTTTATCTTtcaccctccttttctataGTTAGGTTTGACACAGCT
TGTTCTCGTGTATCATATTAATGCGGGTCTGGGCATTCCTGATGAGGTCT
TCACATTCGGCGATAGCGTTGTCCTTACCGTGCTCGGCCAAATCGCCTTC
ATGCCCACTCTTGTTCTGGCAGCGCGGCTTTGCCCCCCTGGCATCGAAGG
CACTTTATTCGCAACGTTAATGAGTGTCTTTAACGGCGCAGGAGCACTCG
GGACCGAGCTAGGCGCTCTCTTGACTTCTGCACTTGGCGTCACCGAACGC
AATTTCGAAAATTTAGGTTTGCTCATCATTATCTGCAACCTGAGCAGCCT
TTTAtccttgcctttcctttccttgctggGAAATGAGGATGATAAAGTTG
AAGTAGATAGTGGTACATGA
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Coding sequence (CDS) from alignment at CM002465.1:563331..565150+

>rna5264 ID=rna5264|Name=rna5264|organism=Nannochloropsis gaditana|type=CDS|length=3192bp|location=Sequence derived from alignment at CM002465.1:563331..565150+ (Nannochloropsis gaditana)
ATGAAGGAGCCGTTTATTTTAACAAGACCACAGGACACTAGGAGAGTCAT
GATTTATCTTGCATTCTTTCTACTTCTTCCGTACGTTACGGGATTTCGAC
CTTCGTCTCCTGCGGTCAGTTTTCGGAACCGGTATGTCTGTTTTCGCTCT
TGCTGCGCAACCAGGGTGGTGCCTTTGTCATGGAAGAATGGCTTAGACAA
GAAACGAGTCgcggggacgaggatgtTACtacagggggaggatgcaTCAA
ATACCCCGTCCACTGGACTCAAGTGGAACCAGGCTATACGAAATAACCTG
TTTTTGGGCGTGGAGCCATCCCCAGACGTGACAGCAATTTTGGTGGTGTA
TTTCGTGCAGGGTGCTATTGGCTTGGCTCGCCTTGCGACAACATTTTATC
TGAAGGACGATCTCCATCTCTCTCCGGCCCAGTCAGCGGCCCTCATGGGA
ATTTTTACGGCCCCATGGCTCCTGAAGCCTTTATACGGCTTTCTTTCTGA
CGGGTTTCCCTTGGGCGGTTATCGACGGCGCTCTTATCTCGCCATCTCCG
GCTTACTAGGAGCGGTGTCATACTTCGTCCTGGCATTTCCTGGGCTGGTT
GACTCTGTGGCTGCGGCGACGTTAGCATGTACGTTCGGCTCTTTGTCCGT
GGCGGTCAGTGACGTTGTGGCTGACTCAATTGTAGTTGAGAAAATTCGTA
CGGAAAGTCCCGCAGGCAACCTCAAGCTTGCCGGAGGATTGCAGTCCTTG
TGCTGGGGAAGCTCTGCCGTGGGAGGCATCGTCAGTGCCTATTTCTCGGG
ATTTCTGCTCGAGCATCTTGGCACACGGGCAGTTTTCGGGATCACTGCCA
TCTTGCCGCTCCTGGTAACGCTTATTTCCATGGGCATCCAGGAAAGACGC
GTCACAGTGGACTACTCGCACTCATGGAACAGGGCGAGGGACCAAGTTGC
TGCGCTGTGGTCTGCGGTCTCCCAGAAGTCCGTCTACTtgcctctctttt
tcctgaTACTGTGGCAAGGAAGCCCTTCAAGCGACTCCGCATTTTTCTAC
TTTTTAACCGGTGAGCTTGGCATGGGACCCGAGTTCCTAGGCCGCGTGCG
CCTGGGCACCAGCATCGCCTCTCTAGCTGGAGTCTGGCTGTACCAGCGCT
ACCTCCGGGAGGTGCCTATTTCCAAAGTTCTGCTCTGGACGACGCTTGCT
TCGGTTCCGTTAGGTTTGACACAGCTTGTTCTCGTGTATCATATTAATGC
GGGTCTGGGCATTCCTGATGAGGTCTTCACATTCGGCGATAGCGTTGTCC
TTACCGTGCTCGGCCAAATCGCCTTCATGCCCACTCTTGTTCTGGCAGCG
CGGCTTTGCCCCCCTGGCATCGAAGGCACTTTATTCGCAACGTTAATGAG
TGTCTTTAACGGCGCAGGAGCACTCGGGACCGAGCTAGGCGCTCTCTTGA
CTTCTGCACTTGGCGTCACCGAACGCAATTTCGAAAATTTAGGTTTGCTC
ATCATTATCTGCAACCTGAGCAGCCTTTTAtccttgcctttcctttcctt
gctggGAAATGAGGATGATAAAGTTGAAGTAGATAGTGGTACATGAATGA
AGGAGCCGTTTATTTTAACAAGACCACAGGACACTAGGAGAGTCATGATT
TATCTTGCATTCTTTCTACTTCTTCCGTACGTTACGGGATTTCGACCTTC
GTCTCCTGCGGTCAGTTTTCGGAACCGGTATGTCTGTTTTCGCTCTTGCT
GCGCAACCAGGGTGGTGCCTTTGTCATGGAAGAATGGCTTAGACAAGAAA
CGAGTCgcggggacgaggatgtTACtacagggggaggatgcaTCAAATAC
CCCGTCCACTGGACTCAAGTGGAACCAGGCTATACGAAATAACCTGTTTT
TGGGCGTGGAGCCATCCCCAGACGTGACAGCAATTTTGGTGGTGTATTTC
GTGCAGGGTGCTATTGGCTTGGCTCGCCTTGCGACAACATTTTATCTGAA
GGACGATCTCCATCTCTCTCCGGCCCAGTCAGCGGCCCTCATGGGAATTT
TTACGGCCCCATGGCTCCTGAAGCCTTTATACGGCTTTCTTTCTGACGGG
TTTCCCTTGGGCGGTTATCGACGGCGCTCTTATCTCGCCATCTCCGGCTT
ACTAGGAGCGGTGTCATACTTCGTCCTGGCATTTCCTGGGCTGGTTGACT
CTGTGGCTGCGGCGACGTTAGCATGTACGTTCGGCTCTTTGTCCGTGGCG
GTCAGTGACGTTGTGGCTGACTCAATTGTAGTTGAGAAAATTCGTACGGA
AAGTCCCGCAGGCAACCTCAAGCTTGCCGGAGGATTGCAGTCCTTGTGCT
GGGGAAGCTCTGCCGTGGGAGGCATCGTCAGTGCCTATTTCTCGGGATTT
CTGCTCGAGCATCTTGGCACACGGGCAGTTTTCGGGATCACTGCCATCTT
GCCGCTCCTGGTAACGCTTATTTCCATGGGCATCCAGGAAAGACGCGTCA
CAGTGGACTACTCGCACTCATGGAACAGGGCGAGGGACCAAGTTGCTGCG
CTGTGGTCTGCGGTCTCCCAGAAGTCCGTCTACTtgcctctctttttcct
gaTACTGTGGCAAGGAAGCCCTTCAAGCGACTCCGCATTTTTCTACTTTT
TAACCGGTGAGCTTGGCATGGGACCCGAGTTCCTAGGCCGCGTGCGCCTG
GGCACCAGCATCGCCTCTCTAGCTGGAGTCTGGCTGTACCAGCGCTACCT
CCGGGAGGTGCCTATTTCCAAAGTTCTGCTCTGGACGACGCTTGCTTCGG
TTCCGTTAGGTTTGACACAGCTTGTTCTCGTGTATCATATTAATGCGGGT
CTGGGCATTCCTGATGAGGTCTTCACATTCGGCGATAGCGTTGTCCTTAC
CGTGCTCGGCCAAATCGCCTTCATGCCCACTCTTGTTCTGGCAGCGCGGC
TTTGCCCCCCTGGCATCGAAGGCACTTTATTCGCAACGTTAATGAGTGTC
TTTAACGGCGCAGGAGCACTCGGGACCGAGCTAGGCGCTCTCTTGACTTC
TGCACTTGGCGTCACCGAACGCAATTTCGAAAATTTAGGTTTGCTCATCA
TTATCTGCAACCTGAGCAGCCTTTTAtccttgcctttcctttccttgctg
gGAAATGAGGATGATAAAGTTGAAGTAGATAGTGGTACATGA
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Synonyms
Publications