rna5209, rna5209 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5209
Unique Name	rna5209
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1612
Alignment location	CM002465.1:428436..431175 +

Link to JBrowse

Properties


Property Name	Value
Product	geranylgeranyl reductase
Orig transcript id	gnl\|cribi\|Naga_100207g6.9438.mrna
Orig protein id	gnl\|cribi\|Naga_100207g6.9438
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:428436..431175 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100207g6	gene5029	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5209	rna5209-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25472.1	cds5197	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:428436..431175+
coding sequence from alignment at CM002465.1:428436..431175+

mRNA sequence

>rna5209 ID=rna5209|Name=rna5209|organism=Nannochloropsis gaditana|type=mRNA|length=1612bp
TTTAAGTCCGTTTCCTATCGACAAAGAATAGGAGTTTTCTCCCAGCATCG
GAGAGGAAATTGCCTTCATACCGGGCTCCATATCATTTCGTGGATACATT
TCTACATTTTTCCTCTCTTTAAAGAAGCTCGATGGCGCCAAATCGTCGTG
GCGGGCCCTTAACTCGCAGCAGCAGTGGGAATACTCCGACAAAAAGGACT
AAAGCAACGCCCAAAGCGTCCGAGACATCCTCAGCTGTTCATGACAATGA
TTTGTCGGTCATTTCCAAGAAAGAGATTGAAGACCGTGGAGCGGGCACGG
ACGAAGACACAGACACTTATGTTGACCTGCCGTTCCTGCGCGGAGAGAAG
CGTGTTTTTTTTACTGCTGTCATTTTCCTAACGCGTTTAAACGTCCCTCG
TTGGGCAGAGGCCGACCATCACCCCGCTTATCTAATGCGGTCGATGATGC
ATTTCCCCTTCTTAGGGCTCTGTGTAGGAATTTGGGCGGCTGTCTGGCTC
GAGGCCGCGGCGGTGCTCTGGACCCCTTTTGTCGCTGCAGCGGCTTCGAC
ATTAGCTGGTGTATGGATAACGGGAGCCTTTCATGAAGACGGACTCGCAG
ATTCTTTGGATGCCTTTGGGGGAGGGTGGGGGCGCTTGCAAATCTTGCGC
ATTATGACAGACACTCGCGTGGGAACCTATGCATTGGTGGGCATGATTCT
CGTCATGGGGATGAAACTAAAGAGCTTGGAGGTTTTGCAATCCTTGTCGC
AGTCGGACATAACGATAAGCACTTTTTTGCCCTCCTTATCCCTTTCTCCC
GCCAGCGTGGCCCTGTTAGTGGCCCATACAGTGTCTCGATGGACTGTCCT
TCCTCTAATATACTCCTGCCACTACATTCAAGATGAGCAAAGTGCCAAGC
GAGGGCTTTACAATTGGTTTGCGGACTCTCAGAGGCTCCTGACTCTCCCT
CGTCTCTGCTTGGGCACACTGGTCACGATCCTTGTTCCCGTGTTGCTCCT
CCCTGTTGAGCAAGCCATGAGTGTCTTCCTGGTCGTGGTTCTGGTCACTC
TTGGGGCGTCGTATTACGGAAATTTGATCATTGGGGGGGTCATTGGCGAT
TTTTTAGGCGCAACGATTCAGGTCTGCGAGCTGTGCGTATATCTGCTCTT
GAGCGCTGATCTCAAGCAGACGCAGACAAACCCCTTCCCTCTCGTCATGC
TGGCGGCTACAGCCGTTTTGCCTATTTTGACATCTCGGCCTTTGATTGAC
TTTGGCTTTCGCGCCGAGTGTTAGCAAAAAAAGTTATTTACAAAAGTATA
AGCATGTCTGTCACACTGTTGGAAAAAAATTGGGCAAATAAATTGGAGGG
AGTAAAAAGTACTTCATAGCTTTCAAACTTGAATCTTGCAGTCCCCCTTC
CCATTTTTATCGACTACTTCGGCCCGAGTTCCTTCTTGTCCTGATTACTT
CCTGTTTCGCTGTCAATGCCGCGACACTCTTTCTTTCCTTCGACCATGGA
GTCCATGGTTACCATCTCCCGCATGATCGCACAGGCGGATCTCAGGAGGG
GCAAAGCCAGAAGAGCCCCAGTTCCCTCCCCAAGTCGGAGACTCATCATG
AGAGGCGGCGGG

protein sequence of rna5209

>rna5209-protein ID=rna5209-protein|Name=rna5209|organism=Nannochloropsis gaditana|type=polypeptide|length=513bp
MVLCYDRVVVYILAHACCLTKSIPYSLSPSHLSLFEQEAATMKSAFFVSS
LLVGAQAFNPTLPLNNAFVQRQAARAEPIRAVRTRGDVDMKYRVVVVGGG
PSGSCAAEELAKDKNIETVLLERKMDNAKPCGGAIPLCMVSEFDLPAEII
DRKVRKMKMISPTNREVDIGQTLKPNEYIGMTRREVLDGFLRQRAVNTGA
TAINGLVTKVELPTTEGGRYKIHYSNFEKGTGAAGVPETIEADVIIGADG
ANSRVAKAIDAGEYNYAIAFQERIKISEEKMNFYEELAEMYVGDDVSPDF
YAWVFPKYDHVGVGTGTVINRPAIKMYQKAIRDRAGDKIANGKIIKVEAH
PIPEHPRPRRVVGRVALIGDAAGYVTKCSGEGIYFAAKSGRMAAQSIREL
MAGGTRLPTEKEIKDTYIKDYDRLYGPTYTVLDILQRVFYSSNAAREAFV
ELCESEYVQKVTFDSYLYKRVQGNNPVEDIKLLFKTIGALMRGNALAPRD
KPVYNPVESLKRL

mRNA from alignment at CM002465.1:428436..431175+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5209 ID=rna5209|Name=rna5209|organism=Nannochloropsis gaditana|type=mRNA|length=2740bp|location=Sequence derived from alignment at CM002465.1:428436..431175+ (Nannochloropsis gaditana)
gaaggctCTAGTACACCTTGAGCGGAATCCAAACATTGTTCCTACTGCAA
GTGCCCCTCCTGACCTTTTCTCCTGAATCCCTATTTGGTAAACGATTGTC
ACTACTTGAGCATCTATTGAGGCATTTTTGTTGCGTAGTAGTTTCACTGG
CGTTTCAAAATATGAAAGGAATGCGTCTCGATCGCGCTTATTTTGCCTCT
GCCTCAGCCACACACCCTGCGCACTGTATCTTTGCCTTGCAGTTGGGTGC
AGCACTGCAAGCGAGGCTTCCtactcgccttcccccccgttgCAAGCACA
TGTTTAGTGAAGCTGTGTTTACATGTATAGAGCATGGTCCTATGTTACGA
CCGAGTAGTCGTGTATATTCTTGCTCACGCTTGTTGCCTTACTAAATCAA
TACCGTATtccctgtcgccctcccacctgtcCCTGTTTGAACAGGAAGCC
GCCACCATGAAGTCCGCattcttcgtctcctccctccttgttggGGCCCA
AGCGTTCAACCCCACGCTTCCCTTGAATAACGCTTTCGTACAGCGCCAGG
CAGCCCGTGCCGAGCCCATTCGTGCTGTGAGGACCCGAGGCGGTGAGTCA
GAAAATTGTGGGCAGGGGATGGACGAGAAGAGATCGGAAATCTAAGATAT
TCGCTGCAGACCGTCTCAGCATGCTGTGTTGCCTTTCTCAATGTCTTTCA
GGGGCTTTGTTAAGCTCGGAAAATTAAAGATTGTGAATTATCTTTCTTGT
GTAACTTCGCGCGACCTGTCTCCTCAAGTATCTATCAGTACCTTGCATTA
CTTTGTGACGCTGTGAATGATTTTCATACCTCGCTTGTCGTCCAAGTTGT
GTGTGTGCAGGGTTGTATGGCAATAATTGTGTGCGGTCTGTGGTCAGTTT
CCCGCGCGCGTGGCTCAGAGCTCGATGCATGCGGCGTCCACAGAGCCCTT
CCCACGTCTCCGAGCGAGGTCTTGACTTCTGTCGGACAATTAATGGCTAG
GGTGGAAGACATTTCGTGGTCTAAACCATCTCCCCTTATACACGCAGACG
TGGACATGAAGTATCGCGTTGTGGTGGTCGGCGGGGGGCCCTCGGGGTCG
TGCGCCGCGGAGGAGCTTGCCAAGGACAAGAATATCGAGACCGTCTTGCT
GGAGCGAAAAATGGACAACGCCAAGCCGTGCGGCGGTGCTATCCCTCTGT
GCATGGTCTCCGAGTTCGACCTGCCCGCCGAGATCATCGACCGGAAGGTG
CGCAAGATGAAGATGATCAGCCCGACCAATCGCGAGGTGGACATCGGGCA
GACCCTCAAGCCCAACGAGTACATCGGGATGACACGGCGGGAGGTCCTGG
ACGGTTTCCTCCGACAGCGCGCGGTGAACACGGGCGCCACTGCGATCAAC
GGCCTGGTCACCAAGGTGGAGCTCCCCACtaccgagggagggcggtacAA
GATTCACTACTCCAATTTTGAGAAGGGAACGGGCGCGGCGGGGGTTCCCG
AGACCATCGAGGCGGACGTGATCATCGGTGCGGACGGCGCCAATTCccgc
gtggccaaggcgatCGATGCTGGCGAGTACAACTACGCGATCGCCTTCCA
GGAGCGTATCAAGAtctcggaggagaagatgaacTTCTACGAGGAACTGG
CAGAGATGTACGTGGGGGACGACGTGTCGCCCGATTTCTATGCCTGGGTC
TTCCCCAAGTACGACCACGTGGGGGTGGGCACTGGCACCGTCATCAACCG
CCCCGCGATCAAGATGTATCAGAAGGCCATCCGAGACCGAGCGGGGGACA
AGATCGCGAACGGGAAGATTATCAAGGTAGAAGCGCACCCGATTCCCGAG
CACCCCCGTCCCCGACGTGTGGTGGGCCGGGTGGCTCTGATCGGAGACGC
GGCCGGCTACGTGACCAAGTGCTCGGGAGAGGGCATTTACTTTGCCGCCA
AGTCAGGACGCATGGCCGCCCAGTCGATCCGAGAGCTCATGGCGGGAGGC
ACGCGCTTGCCTACCGAGAAGGAGATCAAGGACACATACATCAAGGACTA
CGACCGACTCTACGGCCCCACCTACACCGTGCTGGACATTTTGCAGCGCG
TGTTCTACTCCTCCAACGCGGCCCGCGAGGCCTTCGTGGAGCTCTGCGAG
TCTGAGTACGTCCAGAAGGTGACGTTTGACTCCTACCTGTACAAACGCGT
ACAAGGAAACAACCCTGTAGAGGATATCAAGCTGCTATTCAAGACGATCG
GGGCCCTGATGCGCGGGAACGCTTTGGCCCCCCGCGACAAGCCCGTCTAC
AACCCGGTGGAGAGCTTGAAGCGTCTGTAAGCTCGGTCGGGGTTTTGCAA
TGAGGGCGAAGGCCTATGAATAGAGGGGCACGCGGCAAGTGAAAGGGACT
GACAGCAGAAGGACTGACCGCCTAAGCTTGAAGAGGGCAGAAGACGAAAA
GCAAAGCCGAACAAGCGCAAAGAAATTAGAGCAAGGcaatggaggcggag
aaattggagggtgggatgccCTCAGAGCAAGCTTGACAAatcaggagggg
agaggaggagaaaagggagggatatTCCCAAGACGGGACCGGGTGCCAAG
AAGCAGCCGTGCCCTCGCACGCTGTCATAGATAGAGActtcgacgaagag
gacaaaTAACCCTATAAAGAAAATCCTCACTGACCACACCATCACCTTCT
TGCGTCCATGCCTGAGAGATGTCTGTTTTCAGTACATACT

Coding sequence (CDS) from alignment at CM002465.1:428436..431175+

>rna5209 ID=rna5209|Name=rna5209|organism=Nannochloropsis gaditana|type=CDS|length=3084bp|location=Sequence derived from alignment at CM002465.1:428436..431175+ (Nannochloropsis gaditana)
ATGGTCCTATGTTACGACCGAGTAGTCGTGTATATTCTTGCTCACGCTTG
TTGCCTTACTAAATCAATACCGTATtccctgtcgccctcccacctgtcCC
TGTTTGAACAGGAAGCCGCCACCATGAAGTCCGCattcttcgtctcctcc
ctccttgttggGGCCCAAGCGTTCAACCCCACGCTTCCCTTGAATAACGC
TTTCGTACAGCGCCAGGCAGCCCGTGCCGAGCCCATTCGTGCTGTGAGGA
CCCGAGGCGACGTGGACATGAAGTATCGCGTTGTGGTGGTCGGCGGGGGG
CCCTCGGGGTCGTGCGCCGCGGAGGAGCTTGCCAAGGACAAGAATATCGA
GACCGTCTTGCTGGAGCGAAAAATGGACAACGCCAAGCCGTGCGGCGGTG
CTATCCCTCTGTGCATGGTCTCCGAGTTCGACCTGCCCGCCGAGATCATC
GACCGGAAGGTGCGCAAGATGAAGATGATCAGCCCGACCAATCGCGAGGT
GGACATCGGGCAGACCCTCAAGCCCAACGAGTACATCGGGATGACACGGC
GGGAGGTCCTGGACGGTTTCCTCCGACAGCGCGCGGTGAACACGGGCGCC
ACTGCGATCAACGGCCTGGTCACCAAGGTGGAGCTCCCCACtaccgaggg
agggcggtacAAGATTCACTACTCCAATTTTGAGAAGGGAACGGGCGCGG
CGGGGGTTCCCGAGACCATCGAGGCGGACGTGATCATCGGTGCGGACGGC
GCCAATTCccgcgtggccaaggcgatCGATGCTGGCGAGTACAACTACGC
GATCGCCTTCCAGGAGCGTATCAAGAtctcggaggagaagatgaacTTCT
ACGAGGAACTGGCAGAGATGTACGTGGGGGACGACGTGTCGCCCGATTTC
TATGCCTGGGTCTTCCCCAAGTACGACCACGTGGGGGTGGGCACTGGCAC
CGTCATCAACCGCCCCGCGATCAAGATGTATCAGAAGGCCATCCGAGACC
GAGCGGGGGACAAGATCGCGAACGGGAAGATTATCAAGGTAGAAGCGCAC
CCGATTCCCGAGCACCCCCGTCCCCGACGTGTGGTGGGCCGGGTGGCTCT
GATCGGAGACGCGGCCGGCTACGTGACCAAGTGCTCGGGAGAGGGCATTT
ACTTTGCCGCCAAGTCAGGACGCATGGCCGCCCAGTCGATCCGAGAGCTC
ATGGCGGGAGGCACGCGCTTGCCTACCGAGAAGGAGATCAAGGACACATA
CATCAAGGACTACGACCGACTCTACGGCCCCACCTACACCGTGCTGGACA
TTTTGCAGCGCGTGTTCTACTCCTCCAACGCGGCCCGCGAGGCCTTCGTG
GAGCTCTGCGAGTCTGAGTACGTCCAGAAGGTGACGTTTGACTCCTACCT
GTACAAACGCGTACAAGGAAACAACCCTGTAGAGGATATCAAGCTGCTAT
TCAAGACGATCGGGGCCCTGATGCGCGGGAACGCTTTGGCCCCCCGCGAC
AAGCCCGTCTACAACCCGGTGGAGAGCTTGAAGCGTCTGTAAATGGTCCT
ATGTTACGACCGAGTAGTCGTGTATATTCTTGCTCACGCTTGTTGCCTTA
CTAAATCAATACCGTATtccctgtcgccctcccacctgtcCCTGTTTGAA
CAGGAAGCCGCCACCATGAAGTCCGCattcttcgtctcctccctccttgt
tggGGCCCAAGCGTTCAACCCCACGCTTCCCTTGAATAACGCTTTCGTAC
AGCGCCAGGCAGCCCGTGCCGAGCCCATTCGTGCTGTGAGGACCCGAGGC
GACGTGGACATGAAGTATCGCGTTGTGGTGGTCGGCGGGGGGCCCTCGGG
GTCGTGCGCCGCGGAGGAGCTTGCCAAGGACAAGAATATCGAGACCGTCT
TGCTGGAGCGAAAAATGGACAACGCCAAGCCGTGCGGCGGTGCTATCCCT
CTGTGCATGGTCTCCGAGTTCGACCTGCCCGCCGAGATCATCGACCGGAA
GGTGCGCAAGATGAAGATGATCAGCCCGACCAATCGCGAGGTGGACATCG
GGCAGACCCTCAAGCCCAACGAGTACATCGGGATGACACGGCGGGAGGTC
CTGGACGGTTTCCTCCGACAGCGCGCGGTGAACACGGGCGCCACTGCGAT
CAACGGCCTGGTCACCAAGGTGGAGCTCCCCACtaccgagggagggcggt
acAAGATTCACTACTCCAATTTTGAGAAGGGAACGGGCGCGGCGGGGGTT
CCCGAGACCATCGAGGCGGACGTGATCATCGGTGCGGACGGCGCCAATTC
ccgcgtggccaaggcgatCGATGCTGGCGAGTACAACTACGCGATCGCCT
TCCAGGAGCGTATCAAGAtctcggaggagaagatgaacTTCTACGAGGAA
CTGGCAGAGATGTACGTGGGGGACGACGTGTCGCCCGATTTCTATGCCTG
GGTCTTCCCCAAGTACGACCACGTGGGGGTGGGCACTGGCACCGTCATCA
ACCGCCCCGCGATCAAGATGTATCAGAAGGCCATCCGAGACCGAGCGGGG
GACAAGATCGCGAACGGGAAGATTATCAAGGTAGAAGCGCACCCGATTCC
CGAGCACCCCCGTCCCCGACGTGTGGTGGGCCGGGTGGCTCTGATCGGAG
ACGCGGCCGGCTACGTGACCAAGTGCTCGGGAGAGGGCATTTACTTTGCC
GCCAAGTCAGGACGCATGGCCGCCCAGTCGATCCGAGAGCTCATGGCGGG
AGGCACGCGCTTGCCTACCGAGAAGGAGATCAAGGACACATACATCAAGG
ACTACGACCGACTCTACGGCCCCACCTACACCGTGCTGGACATTTTGCAG
CGCGTGTTCTACTCCTCCAACGCGGCCCGCGAGGCCTTCGTGGAGCTCTG
CGAGTCTGAGTACGTCCAGAAGGTGACGTTTGACTCCTACCTGTACAAAC
GCGTACAAGGAAACAACCCTGTAGAGGATATCAAGCTGCTATTCAAGACG
ATCGGGGCCCTGATGCGCGGGAACGCTTTGGCCCCCCGCGACAAGCCCGT
CTACAACCCGGTGGAGAGCTTGAAGCGTCTGTAA

Synonyms

Publications