EWM25529.1, cds5180 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|585107295|gb|EWM25529.1| (Mpv17/PMP22 [Nannochloropsis gaditana]) HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query: 1 MKYTNKLFFLSARGDWFKRTCGTTRLPSRLLTAPSNCNTTRKIVKSTEATSSPFLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 248
MKYTNKLFFLSARGDWFKRTCGTTRLPSRLLTAPSNCNTTRKIVKSTEATSSPFLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK
Sbjct: 1 MKYTNKLFFLSARGDWFKRTCGTTRLPSRLLTAPSNCNTTRKIVKSTEATSSPFLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 248
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|553189343|ref|XP_005854983.1| (protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >gi|553190425|ref|XP_005855189.1| protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >gi|422293871|gb|EKU21171.1| protein Mpv17, partial [Nannochloropsis gaditana CCMP526] >gi|422294079|gb|EKU21379.1| protein Mpv17, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 251.521 bits (641), Expect = 1.542e-82 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 130 GGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 248
GGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK
Sbjct: 1 GGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 119
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|299473619|emb|CBN78013.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 166.777 bits (421), Expect = 7.470e-48 Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 0
Query: 60 IYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLT----RYEKQQERATDLPNVARSSP-------TPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISHK 248
+Y+ L+ P+ TK +TS I AGDV+CQ L + E+++ A D+ + P + DW RT +F +G +V PALH WY FLI+ P + +KR+A+DQ +FAP F+ VF S + LDGN ++ RKL+ DY TL++NW WIPA ++NFRFV YQVLY+N VGF WNI+LS S+K
Sbjct: 1 MYNSLLESRPLATKAVTSGAIAFAGDVSCQLLALEVAKREEEKSSAQDVDELEHHEPFGDGGARSVASEIDWGRTLRFTFVGAAVVAPALHAWYGFLIQRLPGTAPATVVKRVALDQLLFAPGFLAVFLSTVMLLDGN--AAKIDRKLRADYTTTLVSNWGYWIPAQVINFRFVAPVYQVLYANFVGFFWNIYLSYQSNK 198
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|567989087|gb|ETL39355.1| (hypothetical protein L916_09288 [Phytophthora parasitica] >gi|568018331|gb|ETL92506.1| hypothetical protein L917_09221 [Phytophthora parasitica] >gi|570950519|gb|ETP15776.1| hypothetical protein F441_09521 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 151.369 bits (381), Expect = 1.091e-41 Identity = 81/209 (38.76%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 41 RKIVKSTEATSSP--FLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
R + ST +T+ F W Y+ L+ HP+ TK++T I G GDV CQ + E + D R A F LGG L+ PALH WY FL P +T+ KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ ANW VW+PA ++NFRFVP QVL++N VG WN +LS +SH
Sbjct: 23 RAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQLVLESEDGDAK-----------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGH--SEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVVGLLWNAYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|567960386|gb|ETK85947.1| (hypothetical protein L915_09384 [Phytophthora parasitica] >gi|568048746|gb|ETM45777.1| hypothetical protein L914_09245 [Phytophthora parasitica] >gi|570984201|gb|ETP43864.1| hypothetical protein F442_09495 [Phytophthora parasitica P10297]) HSP 1 Score: 150.984 bits (380), Expect = 1.661e-41 Identity = 80/209 (38.28%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 41 RKIVKSTEATSSP--FLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
R + ST +T+ F W Y+ L+ HP+ TK++T I G GDV CQ + E + D R A F LGG L+ PALH WY FL P +T+ KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ ANW VW+PA ++NFRFVP QVL++N +G WN +LS +SH
Sbjct: 23 RAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQLVLESEDGDAK-----------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGH--SEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|570326695|gb|ETO74643.1| (hypothetical protein F444_09651 [Phytophthora parasitica P1976]) HSP 1 Score: 150.984 bits (380), Expect = 1.715e-41 Identity = 80/209 (38.28%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 41 RKIVKSTEATSSP--FLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
R + ST +T+ F W Y+ L+ HP+ TK++T I G GDV CQ + E + D R A F LGG L+ PALH WY FL P +T+ KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ ANW VW+PA ++NFRFVP QVL++N +G WN +LS +SH
Sbjct: 23 RAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQLVLESEDGDAK-----------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGH--SEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|675195233|ref|XP_008906501.1| (hypothetical protein PPTG_12056 [Phytophthora parasitica INRA-310] >gi|568093417|gb|ETN08213.1| hypothetical protein PPTG_12056 [Phytophthora parasitica INRA-310] >gi|970637511|gb|KUF81518.1| SYM1 protein [Phytophthora nicotianae]) HSP 1 Score: 150.599 bits (379), Expect = 2.038e-41 Identity = 80/209 (38.28%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 41 RKIVKSTEATSSP--FLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
R + ST +T+ F W Y+ L+ HP+ TK++T I G GDV CQ + E + D R A F LGG L+ PALH WY FL P +T+ KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ ANW VW+PA ++NFRFVP QVL++N +G WN +LS +SH
Sbjct: 23 RAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQLVLESEDGDAK-----------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGH--SEDIPDKLRADWWSVTKANWVVWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|566023037|gb|ETI45948.1| (hypothetical protein F443_09589 [Phytophthora parasitica P1569]) HSP 1 Score: 150.214 bits (378), Expect = 2.668e-41 Identity = 79/209 (37.80%), Postives = 111/209 (53.11%), Query Frame = 0
Query: 41 RKIVKSTEATSSP--FLSPWAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
R + ST +T+ F W Y+ L+ HP+ TK++T I G GDV CQ + E + D R A F LGG L+ PALH WY FL P +T+ KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ ANW +W+PA ++NFRFVP QVL++N +G WN +LS +SH
Sbjct: 23 RAVFSSTSSTAKSWGFRRVWDAYASLLETHPLSTKIVTGGAIAGLGDVGCQLVLESEDGDAK-----------------LDLKRAAIFTFLGGFLISPALHVWYGFLGSRLPGVSTAAVAKRLALDQLGFAPTFLPIILSSVLMLEGH--SEDIPDKLRADWWSVTKANWVIWVPAQILNFRFVPGSMQVLFANVIGLLWNAYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|301120748|ref|XP_002908101.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103132|gb|EEY61184.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 150.214 bits (378), Expect = 3.485e-41 Identity = 77/190 (40.53%), Postives = 105/190 (55.26%), Query Frame = 0
Query: 58 WAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGNFDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
W Y+ L+ HP+KTK++T I G GDV CQ + E + D RT F LGG+L+ P LH WY FL P +TS KRLA+DQ FAP F+P+ S + L+G+ + + KL+ D+ + ANW VW+PA ++NFRFVP QV++SN VG WN +LS +SH
Sbjct: 42 WDTYASLLETHPLKTKIVTGGAIAGLGDVGCQLVLEGEDGDAK-----------------LDVKRTVIFTFLGGLLISPVLHVWYGFLGSRLPGVSTSAVAKRLALDQLGFAPTFLPIILSSVLTLEGH--AEDIPDKLRADWWPLMKANWVVWVPAQILNFRFVPGSMQVIFSNVVGLLWNSYLSYVSH 212
BLAST of EWM25529.1 vs. NCBI_GenBank
Match: gi|1214703064|gb|OWZ15144.1| (Protein Mpv17 [Phytophthora megakarya]) HSP 1 Score: 148.288 bits (373), Expect = 6.464e-41 Identity = 81/191 (42.41%), Postives = 105/191 (54.97%), Query Frame = 0
Query: 58 WAIYSRWLKDHPVKTKLLTSSFIMGAGDVACQFLTRYEKQQERATDLPNVARSSPTPTLPYDWYRTAKFFLLGGVLVGPALHHWYSFLIRLAPVQNTSGALKRLAVDQCIFAPAFIPVFFSGLQFLDGN-FDMDQLRRKLKRDYKETLIANWAVWIPAMMVNFRFVPQHYQVLYSNAVGFCWNIFLSAISH 247
W Y+ L HP+ TK+ T I G GDV CQ L +K+ +D RTA F +LGG L+ P LH WY FL TS +KRLA+DQ FAP F+PVF S + L+G+ +D+ KL+ D+ ANW VW+PA ++NFRFVP QVL+SN VG WN +LS +SH
Sbjct: 15 WDSYASLLGTHPLSTKIATGGAIAGLGDVGCQLLLEGDKR--------------------FDGKRTAIFTILGGFLISPVLHVWYGFLGSRVSGVATSAVMKRLALDQLGFAPIFLPVFLSSVLTLEGHAYDIPD---KLRVDWWSVTKANWGVWVPAQILNFRFVPGPMQVLFSNVVGLLWNAYLSYVSH 182 The following BLAST results are available for this feature:
BLAST of EWM25529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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