rna5186, rna5186 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5186
Unique Name	rna5186
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1490
Alignment location	CM002465.1:363894..366653 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-protein cullin 4
Orig transcript id	gnl\|cribi\|Naga_100032g41.236.mrna
Orig protein id	gnl\|cribi\|Naga_100032g41.236
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:363894..366653 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100032g41	gene5006	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5186	rna5186-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25493.1	cds5174	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:363894..366653+
coding sequence from alignment at CM002465.1:363894..366653+

mRNA sequence

>rna5186 ID=rna5186|Name=rna5186|organism=Nannochloropsis gaditana|type=mRNA|length=1490bp
AACTTACGGCAGCCACTGATGCTTCTATCGCCTCCTACTCGCTTCTCTTT
TGACGGACACACCTTATTTACACCTCGTTTTTAAAATTAGATTTGTGCAC
ATACGTACAGCATTATGGCTGCCGCACGACCCCAGGTCTCCGTCTACAAT
GTTGAAGGTGCTTCCGTGGCGGAAGTACCCCTTCCCGCCGTGCTCACGGC
TCCCATCCGTCCCGACGTGGTCAATTTCGTCTTCACCGGTCTGAACAAGA
ACCACCGCCAGCCCTACGCCGTATCCGAGAAGGCTGGCCACCAAACCTCA
GCCGAATCGTGGGGCACAGGTCGTGCCGTGGCACGAATCCCCCGTGTGGG
TGGAGGCGGCACCCAACGGTCCGGGCAAGGTGCCTTCGGGAACATGTGCC
GGAGCGGACGCATGTTCGCACCTACGAAGATCTGGCGCCGCTGGCACCGC
AAGATCAACATCACCCAGAAGCGGTATGCCGTGGCTTCGGCGCTGGCGGC
TTCGGCCGTGCCGGCGTTGGTCATGGCCCGCGGCCACTGGGTGGATGGAG
TGGCGGAGATCCCTTTCGTGTTGGACGAATCCTTCGCCAAGGTGGACAAG
ACGGCGCAGGCGGTCAAGGTCTTGGGCGCCCTGGGTGTGGGCCCGGAGCT
GGACAAGAGCAAGGACTCGAAGAAGATCCGCTCTGGGAAAGGGAAGATGC
GAAACCGGCGGTACGTTCTGCGCCGAGGCCCCCTGGTCATCTACTCAACA
GGGGAGGAAGGAGTGGTCAAGGCCGTGCGCAACATCGTGGGGGTGGAGGC
CGCCCATGTGGACCGACTGAACCTGCTCCAGCTGGCCCCCGGAGGCCACT
TGGGTCGCTTTTGCATCTGGACTCGGGGTGCGTTCGAGCGCTTGGACGCC
GTCTTCGGGACGCAGACCGAGAAGAGCCAAGTCAAGCTCGACTACGTGCT
GCCCCGCGCCCCCATGGCCAACGCAGACTTGGCCCGTATCATCAACAGCG
AGGAGGTGCAATCCGTGGTGCGACCTGCGGTGACAGAGACGGTGCGGCTG
CCCCGCAAGAAGAACCCACTCAAGAACCTCGCCGCCATGGTCCGTATGAA
TCCTTACGTGCTGGTGCACCGTCGTCAAGAGCTTAAGCGCATGGCCGCTG
CGGCTGGCGCGAAGAAAGGAGGGAAGGAGAAGGAGGAGAAGAAGGCGAGG
AAGGCGGCGGGTCGGGCTTTCTACGAGCAGGCCTCTAAGGAAGGGGATAT
CAAGTTCTAAGCGGGGCGGGGGGATGGGTGGGGGGGAGACAAGGACTGGT
GGGCGGTAGGCAGTGATGTAAGACGAGGAGGTGAGGCTTCGACGAACGTG
CCCCTGCCTCATAATGGTCACGTCTAGCCAGGTCACCTCGTCTCAAAAGA
GGGCCCCGTGCATCAAAAGGAATGAAAGGATTTCTCAGGCACGTGTCAGG
AGCGTGAGTCCTAGAGCATTCGCCAGTATCTAGTTTCTGT

protein sequence of rna5186

>rna5186-protein ID=rna5186-protein|Name=rna5186|organism=Nannochloropsis gaditana|type=polypeptide|length=828bp
MSAAASSSQSRPAGLVMSSRNATVQGNNRGNNGAAGGSNKKMVIRPFKVQ
PKLPENFEDATWEVLRQAVVAVQSKTAVAISYEELYRAVENLCVHKMGAR
LYDRLRMECARHVAAVVGTLASGGVEGFMDPALFLAKVDDVWQDHCEHML
TIRNIFLYMDRSFVMQTSALQPIWDMGLTLFRLELAAQGRGLQRPGAAGG
VQAAAAGAGEGGVAGNTGLDIKIVKGMLRVMERQRNGEAVNLALLRSLVR
MLGSLGLYKPLFLRAFLEDTERYFAVEGTKKMESLDVVAFLLHVERRLGE
AEESVVHYLEPGTRKALITAVESRLLAPHVTALIDKGLTPLMDAQRVEDV
RRLYQLACRKPGGAEELKAAFNAYIRRRGGELVGDDAREKEMIEDLLAFK
DKCDVILSEALGGRSNPACLAAMKDGFEFALNVRPSRPAELLAKFLDAKL
KGEKGVSEGEMEGLLDRIMVLFRYVGSKDVFEAFYKKDLAKRLLLGRSAS
ADLERSMVAKLKAECGATFTNKFEGMFKDMDLSRELMGNYAQFLGTTAAG
EKAGGREGGREGGREVETSVHVLTTGYWPAYPSSDVVVPPVLEPHMARFS
AYYTGKYQGRRLVWQHSLGTCVIKARFPLGTKELSVSFFQAIVLLCFNDG
ESPRVAFTDIKAATRIEDGELRRTLQSLACGKINQRVLQKEPKGKDVEDN
DVFSLNAGFTHKLYRIKINTIQLKETVEENDKTHAEVHRDRQYQIDAAIV
RIMKARKKLSHNLLLSELFGQLKFSVVPVDVKRRVESLIERDYLCRDDIN
PSVYNYGSRKLRILSAYSETCKSDDKEG

mRNA from alignment at CM002465.1:363894..366653+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5186 ID=rna5186|Name=rna5186|organism=Nannochloropsis gaditana|type=mRNA|length=2760bp|location=Sequence derived from alignment at CM002465.1:363894..366653+ (Nannochloropsis gaditana)
CCGTAACTTGATAGGCAATTGTGGAACGCTCTACATATGCTGCTCTGTGA
TACCATAGAAAGCACTCAAAAGAAGATTTGGCTGCGGAGACTTTCTCGTA
ATGAGGACCTGATAATTCTTGTCTTAGCTCTTCTCCGACCTCACTTCCCC
CCATTGATTACATTCTAGGTAGATTGTTTTCTGTAGCGTTCAGACGCTTC
TCGAAGCATTAATCATCAAGCGGGATGTCGGcggcggcgtcctcctcgca
aTCGCGGCCGGCAGGCTTAGTCATGTCCAGCCGAAATGCGACTGTCCAAG
GCAACAACCGCGGCAACAATGGGGCCGCAGGGGGATCGAATAAGAAAATG
GTGATTCGACCGTTTAAAGTCCAACCAAAGCTACCGGAAAACTTTGAAGA
TGCGACCTGGGAGGTTCTGAGACAGGCAGTGGTGGCGGTGCAAAGCAAGA
CTGCAGTAGCTATCAGCTACGAGGAACTTTACAGGGCCGTGGAAAATTTA
TGCGTACACAAAATGGGGGCCCGGTTGTACGACCGTCTGCGCATGGAATG
TGCCCGACACGTGGCTGCAGTGGTGGGGACCCTGGCAtcggggggcgtgg
agggcttcATGGATCCGGCTTTGTTCTTGGCCAAAGTGGACGACGTGTGG
CAGGACCACTGCGAGCACATGCTTACCATCCGGAACATCTTTTTGTACAT
GGATCGGAGTTTCGTGATGCAGACCTCGGCGCTGCAACCGATCTGGGACA
TGGGCCTGACCCTTTTTCGACTGGAGCTGgcggcgcaagggagggggcta
CAGCGaccgggggcggcggggggagtCCAAGCCGCAGCCGCGGgagcggg
cgaaggaggggtggcTGGAAATACAGGATTGGACATAAAGATCGTCAAGG
GGATGTTGAGGGTGATGGAGCGGCAGCGTAATGGGGAGGCGGTCAATCTA
GCCTTGCTGCGGTCGTTGGTGAGGATGCTGGGAAGCTTGGGTCTCTACAA
GCCCCTCTTCTTGAGGGCCTTCTTGGAGGATACAGAGCGGTACTTCGCTG
TGGAAGGaacgaagaagatggagagtctggacgtggtggccttcctcctg
cacgtgGAGCGCCgcttgggggaggcggaggagtcCGTGGTGCACTATCT
GGAGCCGGGCACCCGCAAAGCCCTGATCACAGCCGTGGAGTCAAGGCTCT
TGGCCCCTCACGTCACGGCCCTGATCGACAAGGGCTTGACCCCCCTGATG
GATGCGCAGCGTGTGGAGGACGTTCGGCGATTGTACCAACTCGCGTGCCG
GAAACCggggggcgcggaggagctgaaggcggCTTTCAATGCGTACATCC
gccgaaggggaggggagctgGTAGGGGACGACGCGCGCGAAAAGGAGATG
ATCGAGGACCTTCTGGCTTTCAAGGACAAGTGTGACGTGATCTTGTCGGA
GGCGCTGGGCGGGCGCTCGAATCCCGCCTGTCTGGCCGCCATGAAAGATG
GCTTTGAGTTCGCTCTGAACGTGCGGCCGAGCCGGCCAGCGGAGCTTCTC
GCCAAGTTCCTGGACGCGAAActgaagggagagaaaggcgtgagcgaggg
agagatggaggggctgTTGGACAGGATCATGGTCCTCTTCCGCTACGTGG
GGTCCAAAGACGTCTTCGAGGCCTTCTACAAGAAGGATCTAGCCAAGCGC
TTGCTCTTGGGCCGGAGCGCCTCGGCAGATTTGGAGAGGAGCATGGTGGC
CAAGCTCAAGGCGGAGTGTGGCGCCACCTTCACCAACAAGTTCGAGGGAA
TGTTCAAGGACATGGATCTGTCTCGAGAGCTGATGGGGAACTACGCCCAG
TTTCTGGGGACGACGGCCgccggggagaaggcgggcgggagggagggggg
gagggagggggggagggaggtggagacgagTGTGCACGTGCTCACCACCG
GGTATTGGCCGGCCTACCCATCGAGCGATGTGGTTGTCCCGCCCGTCTTG
GAGCCACACATGGCCCGCTTCTCGGCCTACTACACGGGGAAGTACCAGGG
TCGCCGGCTCGTATGGCAGCACTCGCTGGGCACCTGCGTTATTAAAGCGA
GATTCCCCCTGGGGACCAAAGAGctctccgtctcctttttccaggCCATT
GTGCTCTTGTGCTTCAATGACGGGGAGTCCCCGCGGGTGGCCTTCACGGA
CATCAAAGCAGCAACGCGGATTGAGGATGGGGAGCTCCGGCGGACATTGC
AATCTTTGGCGTGCGGGAAGATCAATCAGCGGGTCTTACAGAAGGAGCCC
AAGggcaaggacgtggaggacaacGATGTCTTCAGCTTGAATGCGGGCTT
CACCCACAAGCTGTACCGCATCAAGATAAATACCATCCAGCTGAAGGAAA
CGGTGGAAGAGAACGACAAAACTCACGCCGAGGTGCACAGGGACAGGCAG
TACCAAATCGACGCAGCGATCGTGAGGATTATGAAAGCCCGCAAGAAATT
GTCGCACAACTTGTTGTTGAGTGAGTTGTTCGGACAGCTTAAATTTTCAG
TGGTGCCGGTGGATGTGAAAAGGCGAGTGGAGAGCCTAATCGAGCGTGAC
TACCTCTGTCGGGACGACATCAACCCGTCTGTGTACAATTACGTGGCCTG
AGGTGGCCAGAGGTTAGGGCAAAACCAGGGATAGTGTAAAGGGGAGCCGT
AAATTGCGCATACTATCTGCATATAGCGAGACATGCAAAAGTGACGATAA
AGAAGGATGA

Coding sequence (CDS) from alignment at CM002465.1:363894..366653+

>rna5186 ID=rna5186|Name=rna5186|organism=Nannochloropsis gaditana|type=CDS|length=4974bp|location=Sequence derived from alignment at CM002465.1:363894..366653+ (Nannochloropsis gaditana)
ATGTCGGcggcggcgtcctcctcgcaaTCGCGGCCGGCAGGCTTAGTCAT
GTCCAGCCGAAATGCGACTGTCCAAGGCAACAACCGCGGCAACAATGGGG
CCGCAGGGGGATCGAATAAGAAAATGGTGATTCGACCGTTTAAAGTCCAA
CCAAAGCTACCGGAAAACTTTGAAGATGCGACCTGGGAGGTTCTGAGACA
GGCAGTGGTGGCGGTGCAAAGCAAGACTGCAGTAGCTATCAGCTACGAGG
AACTTTACAGGGCCGTGGAAAATTTATGCGTACACAAAATGGGGGCCCGG
TTGTACGACCGTCTGCGCATGGAATGTGCCCGACACGTGGCTGCAGTGGT
GGGGACCCTGGCAtcggggggcgtggagggcttcATGGATCCGGCTTTGT
TCTTGGCCAAAGTGGACGACGTGTGGCAGGACCACTGCGAGCACATGCTT
ACCATCCGGAACATCTTTTTGTACATGGATCGGAGTTTCGTGATGCAGAC
CTCGGCGCTGCAACCGATCTGGGACATGGGCCTGACCCTTTTTCGACTGG
AGCTGgcggcgcaagggagggggctaCAGCGaccgggggcggcgggggga
gtCCAAGCCGCAGCCGCGGgagcgggcgaaggaggggtggcTGGAAATAC
AGGATTGGACATAAAGATCGTCAAGGGGATGTTGAGGGTGATGGAGCGGC
AGCGTAATGGGGAGGCGGTCAATCTAGCCTTGCTGCGGTCGTTGGTGAGG
ATGCTGGGAAGCTTGGGTCTCTACAAGCCCCTCTTCTTGAGGGCCTTCTT
GGAGGATACAGAGCGGTACTTCGCTGTGGAAGGaacgaagaagatggaga
gtctggacgtggtggccttcctcctgcacgtgGAGCGCCgcttgggggag
gcggaggagtcCGTGGTGCACTATCTGGAGCCGGGCACCCGCAAAGCCCT
GATCACAGCCGTGGAGTCAAGGCTCTTGGCCCCTCACGTCACGGCCCTGA
TCGACAAGGGCTTGACCCCCCTGATGGATGCGCAGCGTGTGGAGGACGTT
CGGCGATTGTACCAACTCGCGTGCCGGAAACCggggggcgcggaggagct
gaaggcggCTTTCAATGCGTACATCCgccgaaggggaggggagctgGTAG
GGGACGACGCGCGCGAAAAGGAGATGATCGAGGACCTTCTGGCTTTCAAG
GACAAGTGTGACGTGATCTTGTCGGAGGCGCTGGGCGGGCGCTCGAATCC
CGCCTGTCTGGCCGCCATGAAAGATGGCTTTGAGTTCGCTCTGAACGTGC
GGCCGAGCCGGCCAGCGGAGCTTCTCGCCAAGTTCCTGGACGCGAAActg
aagggagagaaaggcgtgagcgagggagagatggaggggctgTTGGACAG
GATCATGGTCCTCTTCCGCTACGTGGGGTCCAAAGACGTCTTCGAGGCCT
TCTACAAGAAGGATCTAGCCAAGCGCTTGCTCTTGGGCCGGAGCGCCTCG
GCAGATTTGGAGAGGAGCATGGTGGCCAAGCTCAAGGCGGAGTGTGGCGC
CACCTTCACCAACAAGTTCGAGGGAATGTTCAAGGACATGGATCTGTCTC
GAGAGCTGATGGGGAACTACGCCCAGTTTCTGGGGACGACGGCCgccggg
gagaaggcgggcgggagggagggggggagggagggggggagggaggtgga
gacgagTGTGCACGTGCTCACCACCGGGTATTGGCCGGCCTACCCATCGA
GCGATGTGGTTGTCCCGCCCGTCTTGGAGCCACACATGGCCCGCTTCTCG
GCCTACTACACGGGGAAGTACCAGGGTCGCCGGCTCGTATGGCAGCACTC
GCTGGGCACCTGCGTTATTAAAGCGAGATTCCCCCTGGGGACCAAAGAGc
tctccgtctcctttttccaggCCATTGTGCTCTTGTGCTTCAATGACGGG
GAGTCCCCGCGGGTGGCCTTCACGGACATCAAAGCAGCAACGCGGATTGA
GGATGGGGAGCTCCGGCGGACATTGCAATCTTTGGCGTGCGGGAAGATCA
ATCAGCGGGTCTTACAGAAGGAGCCCAAGggcaaggacgtggaggacaac
GATGTCTTCAGCTTGAATGCGGGCTTCACCCACAAGCTGTACCGCATCAA
GATAAATACCATCCAGCTGAAGGAAACGGTGGAAGAGAACGACAAAACTC
ACGCCGAGGTGCACAGGGACAGGCAGTACCAAATCGACGCAGCGATCGTG
AGGATTATGAAAGCCCGCAAGAAATTGTCGCACAACTTGTTGTTGAGTGA
GTTGTTCGGACAGCTTAAATTTTCAGTGGTGCCGGTGGATGTGAAAAGGC
GAGTGGAGAGCCTAATCGAGCGTGACTACCTCTGTCGGGACGACATCAAC
CCGTCTGTGTACAATTACGGGAGCCGTAAATTGCGCATACTATCTGCATA
TAGCGAGACATGCAAAAGTGACGATAAAGAAGGATGAATGTCGGcggcgg
cgtcctcctcgcaaTCGCGGCCGGCAGGCTTAGTCATGTCCAGCCGAAAT
GCGACTGTCCAAGGCAACAACCGCGGCAACAATGGGGCCGCAGGGGGATC
GAATAAGAAAATGGTGATTCGACCGTTTAAAGTCCAACCAAAGCTACCGG
AAAACTTTGAAGATGCGACCTGGGAGGTTCTGAGACAGGCAGTGGTGGCG
GTGCAAAGCAAGACTGCAGTAGCTATCAGCTACGAGGAACTTTACAGGGC
CGTGGAAAATTTATGCGTACACAAAATGGGGGCCCGGTTGTACGACCGTC
TGCGCATGGAATGTGCCCGACACGTGGCTGCAGTGGTGGGGACCCTGGCA
tcggggggcgtggagggcttcATGGATCCGGCTTTGTTCTTGGCCAAAGT
GGACGACGTGTGGCAGGACCACTGCGAGCACATGCTTACCATCCGGAACA
TCTTTTTGTACATGGATCGGAGTTTCGTGATGCAGACCTCGGCGCTGCAA
CCGATCTGGGACATGGGCCTGACCCTTTTTCGACTGGAGCTGgcggcgca
agggagggggctaCAGCGaccgggggcggcggggggagtCCAAGCCGCAG
CCGCGGgagcgggcgaaggaggggtggcTGGAAATACAGGATTGGACATA
AAGATCGTCAAGGGGATGTTGAGGGTGATGGAGCGGCAGCGTAATGGGGA
GGCGGTCAATCTAGCCTTGCTGCGGTCGTTGGTGAGGATGCTGGGAAGCT
TGGGTCTCTACAAGCCCCTCTTCTTGAGGGCCTTCTTGGAGGATACAGAG
CGGTACTTCGCTGTGGAAGGaacgaagaagatggagagtctggacgtggt
ggccttcctcctgcacgtgGAGCGCCgcttgggggaggcggaggagtcCG
TGGTGCACTATCTGGAGCCGGGCACCCGCAAAGCCCTGATCACAGCCGTG
GAGTCAAGGCTCTTGGCCCCTCACGTCACGGCCCTGATCGACAAGGGCTT
GACCCCCCTGATGGATGCGCAGCGTGTGGAGGACGTTCGGCGATTGTACC
AACTCGCGTGCCGGAAACCggggggcgcggaggagctgaaggcggCTTTC
AATGCGTACATCCgccgaaggggaggggagctgGTAGGGGACGACGCGCG
CGAAAAGGAGATGATCGAGGACCTTCTGGCTTTCAAGGACAAGTGTGACG
TGATCTTGTCGGAGGCGCTGGGCGGGCGCTCGAATCCCGCCTGTCTGGCC
GCCATGAAAGATGGCTTTGAGTTCGCTCTGAACGTGCGGCCGAGCCGGCC
AGCGGAGCTTCTCGCCAAGTTCCTGGACGCGAAActgaagggagagaaag
gcgtgagcgagggagagatggaggggctgTTGGACAGGATCATGGTCCTC
TTCCGCTACGTGGGGTCCAAAGACGTCTTCGAGGCCTTCTACAAGAAGGA
TCTAGCCAAGCGCTTGCTCTTGGGCCGGAGCGCCTCGGCAGATTTGGAGA
GGAGCATGGTGGCCAAGCTCAAGGCGGAGTGTGGCGCCACCTTCACCAAC
AAGTTCGAGGGAATGTTCAAGGACATGGATCTGTCTCGAGAGCTGATGGG
GAACTACGCCCAGTTTCTGGGGACGACGGCCgccggggagaaggcgggcg
ggagggagggggggagggagggggggagggaggtggagacgagTGTGCAC
GTGCTCACCACCGGGTATTGGCCGGCCTACCCATCGAGCGATGTGGTTGT
CCCGCCCGTCTTGGAGCCACACATGGCCCGCTTCTCGGCCTACTACACGG
GGAAGTACCAGGGTCGCCGGCTCGTATGGCAGCACTCGCTGGGCACCTGC
GTTATTAAAGCGAGATTCCCCCTGGGGACCAAAGAGctctccgtctcctt
tttccaggCCATTGTGCTCTTGTGCTTCAATGACGGGGAGTCCCCGCGGG
TGGCCTTCACGGACATCAAAGCAGCAACGCGGATTGAGGATGGGGAGCTC
CGGCGGACATTGCAATCTTTGGCGTGCGGGAAGATCAATCAGCGGGTCTT
ACAGAAGGAGCCCAAGggcaaggacgtggaggacaacGATGTCTTCAGCT
TGAATGCGGGCTTCACCCACAAGCTGTACCGCATCAAGATAAATACCATC
CAGCTGAAGGAAACGGTGGAAGAGAACGACAAAACTCACGCCGAGGTGCA
CAGGGACAGGCAGTACCAAATCGACGCAGCGATCGTGAGGATTATGAAAG
CCCGCAAGAAATTGTCGCACAACTTGTTGTTGAGTGAGTTGTTCGGACAG
CTTAAATTTTCAGTGGTGCCGGTGGATGTGAAAAGGCGAGTGGAGAGCCT
AATCGAGCGTGACTACCTCTGTCGGGACGACATCAACCCGTCTGTGTACA
ATTACGGGAGCCGTAAATTGCGCATACTATCTGCATATAGCGAGACATGC
AAAAGTGACGATAAAGAAGGATGA

Synonyms

Publications