EWM25515.1, cds5170 (CDS) Nannochloropsis gaditana

Overview
NameEWM25515.1
Unique Namecds5170
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:357750..358067 -
Alignment locationCM002465.1:356052..357317 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25515.1
Producte3 ubiquitin ligase
Orig transcript idgnl|cribi|Naga_100032g37.258.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:357750..358067 -
CM002465.1supercontigCM002465.1:356052..357317 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|585107281|gb|EWM25515.1| (e3 ubiquitin ligase [Nannochloropsis gaditana])

HSP 1 Score: 1070.07 bits (2766), Expect = 0.000e+0
Identity = 527/527 (100.00%), Postives = 527/527 (100.00%), Query Frame = 0
Query:    1 MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA 527
            MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA
Sbjct:    1 MMEENPSMANGGINPTTPTRRPYRRARAAPFLPASDGEMLYGSDRGIGRAEQRGRRRQVQGVGNEREEEDEEMVGDVEWLLDTRRWTPIGAEIDYTAFHRLSFRDKLRTLVWVHKTRLLGRYKIFHNYIERCPCRPCSPLSRSYARSYSRALTSIGPRPCLRAPLSLLGLQGLFIRTPPSADAWRSAADILDGGGGEGRRGGRGGDDRSNAYLVEIFRLQPYAAAAYLRALLYCWIGGVMLQLEAAASFGSGGDTFYERTAWHWLCLQLVLQLLQAPARCKLWRRLVRVSHAPEADQAAEQIRRLVRSHLWMCSQALGTLFHVVAAFGPLFLYMLAPASPVRRSVLAACCGNLLVFIVRSALTFLVVHSIMEARNSNEGGDGGREGPRKGLRRGLSRNSLAKLRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALVAALAAVAAEVNVVKGGGQEQGESGEELAGRQGEGGEAWAGRQGGGIGGHVQEELQA 527          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|1149701616|ref|XP_020163540.1| (E3 ubiquitin ligase BIG BROTHER-related-like [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 80.1073 bits (196), Expect = 5.915e-13
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
            RG+S N+LA L      AED   +N   C IC   F+EGE+L+ LPC  +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct:  208 RGVSANTLASLPLVTYQAEDNQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVSTP 283          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|357148802|ref|XP_003574899.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X1 [Brachypodium distachyon] >gi|944063705|gb|KQJ99295.1| hypothetical protein BRADI_3g42410 [Brachypodium distachyon])

HSP 1 Score: 78.1814 bits (191), Expect = 2.898e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
            RGLS ++LA L      A+D   +N   C IC   F+EGE+L+ LPC  +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct:  222 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 297          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|721663376|ref|XP_010235389.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related isoform X2 [Brachypodium distachyon] >gi|944063704|gb|KQJ99294.1| hypothetical protein BRADI_3g42410 [Brachypodium distachyon])

HSP 1 Score: 78.1814 bits (191), Expect = 3.055e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
            RGLS ++LA L      A+D   +N   C IC   F+EGE+L+ LPC  +H YH+ CI +WL+ N+ CP+C A++++P
Sbjct:  221 RGLSADTLASLPSVTYEAKDKQDSNTEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEVSTP 296          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|474382286|gb|EMS64698.1| (E3 ubiquitin ligase BIG BROTHER-related protein [Triticum urartu])

HSP 1 Score: 77.0258 bits (188), Expect = 3.255e-12
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSP 468
            RG+S ++LA L      AED   +N   C IC   F+E E+L+ LPC  +H YH+ CI++WL+ N+ CP+C A++++P
Sbjct:  161 RGVSADTLASLPSVTYQAEDNQDSNMEQCVICRVEFEESESLVALPC--KHSYHSDCIKQWLQLNKVCPMCSAEVSTP 236          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|1102793775|ref|XP_019051736.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Nelumbo nucifera])

HSP 1 Score: 73.9442 bits (180), Expect = 8.749e-12
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0
Query:  390 GLRRGLSRNSLAK-LRRRDSNAEDVMGANHCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITSPALV 471
            G+ RGL  + + K LR  +   E   G + C IC   ++EGE+L+ LPC   H YH+ CI  WL+  + CP+C  D++SP LV
Sbjct:   85 GMNRGLPADEVTKFLRPCEYKIECKNGLDRCVICQVDYEEGESLVSLPCE--HPYHSDCISNWLQIKKVCPICSTDVSSPPLV 165          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|326529613|dbj|BAK04753.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 74.7146 bits (182), Expect = 3.750e-11
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
            RG+S ++LA L      A+D   +N   C IC   F+EGE+L+ LPC  +H YH+ CI +WL+ N+ CP+C A++++
Sbjct:  212 RGVSADTLASLPSVTYQAQDKQESNMEQCVICRVEFEEGESLVALPC--KHSYHSDCINQWLQLNKVCPMCSAEVST 286          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|357159651|ref|XP_003578515.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Brachypodium distachyon] >gi|944055579|gb|KQJ91217.1| hypothetical protein BRADI_4g36320 [Brachypodium distachyon])

HSP 1 Score: 74.7146 bits (182), Expect = 6.412e-11
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
            RGLS ++LA L       +DV   N   C IC   F+EGE+L+ LPC  +H YH  CI +WL+ N+ CP+C A++++
Sbjct:  257 RGLSADTLASLPSVTYKTKDVQDGNTEQCVICRVEFEEGESLVALPC--KHSYHPDCINQWLQINKVCPMCSAEVST 331          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|573954843|ref|XP_006659662.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Oryza brachyantha])

HSP 1 Score: 73.9442 bits (180), Expect = 7.820e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADI 465
            RGLS ++LA L      A+D   +N   C IC   F+EGE+L+ LPC  +H YH+ CI +WL+ N+ CP+C A++
Sbjct:  221 RGLSADTLASLPSITYRAQDKQDSNMEQCVICRVEFEEGESLVALPC--KHSYHSECINQWLQLNKVCPMCSAEV 293          
BLAST of EWM25515.1 vs. NCBI_GenBank
Match: gi|514732598|ref|XP_004957470.1| (PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Setaria italica])

HSP 1 Score: 72.7886 bits (177), Expect = 2.226e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
Query:  393 RGLSRNSLAKLRRRDSNAEDVMGAN--HCAICLAFFQEGETLLCLPCHERHVYHTGCIERWLKKNRSCPLCMADITS 467
            RGLS ++LA L      A++V   N   C IC   F++GE+L+ LPC  +H YH  CI +WL+ N+ CP+C A++++
Sbjct:  243 RGLSADTLASLPSVKYKAQNVQDGNTEQCVICRVEFEDGESLIALPC--KHSYHPECINQWLQINKVCPMCSAEVST 317          
The following BLAST results are available for this feature:
BLAST of EWM25515.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107281|gb|EWM25515.1|0.000e+0100.00e3 ubiquitin ligase [Nannochloropsis gaditana][more]
gi|1149701616|ref|XP_020163540.1|5.915e-1344.87E3 ubiquitin ligase BIG BROTHER-related-like [Aegi... [more]
gi|357148802|ref|XP_003574899.1|2.898e-1243.59PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|721663376|ref|XP_010235389.1|3.055e-1243.59PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|474382286|gb|EMS64698.1|3.255e-1242.31E3 ubiquitin ligase BIG BROTHER-related protein [T... [more]
gi|1102793775|ref|XP_019051736.1|8.749e-1240.96PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|326529613|dbj|BAK04753.1|3.750e-1141.56predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|357159651|ref|XP_003578515.1|6.412e-1142.86PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|573954843|ref|XP_006659662.1|7.820e-1144.00PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
gi|514732598|ref|XP_004957470.1|2.226e-1041.56PREDICTED: E3 ubiquitin ligase BIG BROTHER-related... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5182rna5182Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications