EWM25517.1, cds5152 (CDS) Nannochloropsis gaditana

Overview
NameEWM25517.1
Unique Namecds5152
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:303476..304384 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25517.1
Productgnat family
Orig transcript idgnl|cribi|Naga_100032g17.260.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:303476..304384 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008080N-acetyltransferase activity
Vocabulary: INTERPRO
TermDefinition
IPR016181Acyl_CoA_acyltransferase
IPR000182GNAT_dom
Homology
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|585107283|gb|EWM25517.1| (gnat family [Nannochloropsis gaditana])

HSP 1 Score: 612.453 bits (1578), Expect = 0.000e+0
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0
Query:    1 MFRNHSCDSSCRITGEMGWKSEENGSKRQRRRNGAVDFKLPSLILLLPVLQLLPLVASLQLQHSTCLRSSLTAIYSASSRGCRASSSTSIKSGSLNIFPAAVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSRVIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLDSLWRLLKIGKVTMTKRL 302
            MFRNHSCDSSCRITGEMGWKSEENGSKRQRRRNGAVDFKLPSLILLLPVLQLLPLVASLQLQHSTCLRSSLTAIYSASSRGCRASSSTSIKSGSLNIFPAAVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSRVIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLDSLWRLLKIGKVTMTKRL
Sbjct:    1 MFRNHSCDSSCRITGEMGWKSEENGSKRQRRRNGAVDFKLPSLILLLPVLQLLPLVASLQLQHSTCLRSSLTAIYSASSRGCRASSSTSIKSGSLNIFPAAVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSRVIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLDSLWRLLKIGKVTMTKRL 302          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|298706850|emb|CBJ25814.1| (acetyltransferase [Ectocarpus siliculosus])

HSP 1 Score: 87.0409 bits (214), Expect = 6.142e-16
Identity = 66/201 (32.84%), Postives = 107/201 (53.23%), Query Frame = 0
Query:  116 SQIEIRRATVRDFPAIASTRKTIIFVPKQG--GGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSRVI-----GTVDVFERDREGPSLPR--RLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTR--GPLD-----SLWRLLKIGKVTMTK 300
            +++ +RRA   D+  +A  R  II V   G  G  G  VV   +++ +  E R +++K+  LV+G+++A IA+   +I     G+   I      TVD   + ++ P +P+   +FLKN+ V P+ RRQG+AR L+   E  AR+   + + L+V   N+AA+ LY   GFE     GP++     +L R L +GK  M K
Sbjct:  135 ARVTVRRAREPDYQGVAEIRGVIIPVGMSGATGFLGGKVV---IDDPAEAERRLLMAKVADLVSGESVALIALEGQRIV----GTVDCIIRSAAATVDTLGQPKQQPEIPKANEVFLKNLFVLPERRRQGIARELVNGAEVFARQEKARTVCLDVARQNDAARELYLSCGFEEAERPGPIEGGMGGALLRSLGMGKKYMVK 328          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|493499061|ref|WP_006453587.1| (N-acetyltransferase [Synechococcus sp. PCC 7335] >gi|196188879|gb|EDX83843.1| acetyltransferase, GNAT family [Synechococcus sp. PCC 7335])

HSP 1 Score: 71.2478 bits (173), Expect = 3.255e-11
Identity = 31/89 (34.83%), Postives = 57/89 (64.04%), Query Frame = 0
Query:  191 ISLGGSGSSRVIGTVDVFERDREGPSL--PRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGF 277
            + +  + S +++GT ++ +R  E   L  P+R ++ N+  +P +RRQG+A++LL  +E  A   G  +++L V+A+N AA+ALYE  G+
Sbjct:   72 VDVTSAQSGKIVGTAEISQRPCEAWRLLPPKRAYISNLATEPAYRRQGVAQQLLHTSEKIAFNWGFHQVYLHVMADNSAARALYERAGY 160          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|504989978|ref|WP_015177080.1| (GCN5-related N-acetyltransferase [Oscillatoria nigro-viridis] >gi|428242031|gb|AFZ07817.1| GCN5-related N-acetyltransferase [Oscillatoria nigro-viridis PCC 7112])

HSP 1 Score: 71.2478 bits (173), Expect = 3.801e-11
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 0
Query:  198 SSRVIGTVDVFERDREGPSLPR--RLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGF 277
            + R+ GTV++  R R    +P     +L N+ V P++RRQG+A++LL+  E+ ARE G  EI+L VL NN AA+ LY + G+
Sbjct:   97 AQRITGTVEMALRSRFPWQIPNSDYPYLSNLAVHPEYRRQGVAQQLLSNCEETAREWGFSEIYLHVLENNHAARQLYYQAGY 178          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|551570780|ref|XP_005771311.1| (hypothetical protein EMIHUDRAFT_102363 [Emiliania huxleyi CCMP1516] >gi|485622519|gb|EOD18882.1| hypothetical protein EMIHUDRAFT_102363 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 71.633 bits (174), Expect = 3.941e-11
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 0
Query:  201 VIGTVDVFE------RDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGP 283
            VIGTVD         R   GP LP+RL ++N+ V   FRRQG+ RRL+   E+ A E+ I+ + L+VLA+NE A+ LYE  GF     P
Sbjct:  106 VIGTVDCVALPAGKGRRAMGPELPQRLLIRNLWVAEAFRRQGIGRRLMDAAEELAAEMHIEFLSLDVLADNEPARRLYESLGFTDLEPP 194          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|1181368891|ref|WP_084669072.1| (hypothetical protein [Spirulina major])

HSP 1 Score: 71.633 bits (174), Expect = 4.319e-11
Identity = 61/227 (26.87%), Postives = 97/227 (42.73%), Query Frame = 0
Query:   82 CRASSSTSIKSGSLNIFPAAVTSSAPNLSLPRTLSQIEIRRATVRDFPAIASTRKTIIFVPKQGGGNGAGVVRRALENASSQEEREMLSKIPYLVTGQAIAFIAIGKPKISLGGSGSSRVIGTVDVFERDREGPSLPRRL-----FLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEY-TRGPLDSLWRLLKIGKVTMTKRL 302
            C +    ++     +  P++  S+A +L+ PR  + I IR AT  D P +A         P         ++R  ++       R  L         Q   F A+  P        + +VIGTV+V  R    P   RR      ++ N+ V P +RR+G+ARRLL   E  AR+ G + I+L VL  N+ A+ LY+  G+      P    W   +  ++ + K L
Sbjct:   17 CSSPFLNTVLDSCYSPAPSSAVSAADDLTCPR--AAIAIRHATAADIPRLAEVLTDSFHPPTSVMFWMQPLIRFGIQEDLRARFRADLP--------QYCCFAAVSHP--------TEQVIGTVEVSVR----PLTWRRYTVEYPYISNLAVHPHYRRRGVARRLLLGCEPKARDWGFEAIYLHVLNRNQPAQQLYQGLGYHIEDSAPNYGGWEWFQPQRLLLYKSL 221          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|493684331|ref|WP_006634463.1| (N-acetyltransferase [Microcoleus vaginatus] >gi|333457248|gb|EGK85873.1| GCN5-related N-acetyltransferase [Microcoleus vaginatus FGP-2])

HSP 1 Score: 71.2478 bits (173), Expect = 4.499e-11
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 0
Query:  200 RVIGTVDVFERDREGPSLPR--RLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGF 277
            R+ GTV++  R R    +P     +L N+ V PD+RRQG+A++LL+  E+ ARE G  EI+L VL NN AA+ LY + G+
Sbjct:   99 RMAGTVEMALRSRFPWQIPSSDYPYLSNLAVHPDYRRQGVAQQLLSNCEETAREWGFSEIYLHVLENNHAARQLYYQAGY 178          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|501599676|ref|WP_012599262.1| (N-acetyltransferase [Cyanothece sp. PCC 7424] >gi|218171586|gb|ACK70319.1| GCN5-related N-acetyltransferase [Cyanothece sp. PCC 7424])

HSP 1 Score: 70.8626 bits (172), Expect = 6.655e-11
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 0
Query:  182 AFIAIGKPKISLGGSGSSRVIGTVDVFERDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTRGPLD-SLW------RLLKIGKVTMTK 300
             F+A  +   S        +IGTV++  R  E P  P   ++ N+ V    RRQG+AR+LL + E  A E G KE++L VL +N  AK LY   G++  R   + + W      RL  I K+T T+
Sbjct:   82 CFVACHQVITSTSTKEQEEIIGTVEISLRS-EWPGTPPTAYISNLAVSSHCRRQGIARKLLLKCEQIALEWGFKELYLHVLEDNHVAKQLYLSSGYQLHRIDFNLNSWLFGSPRRLCLIKKLTHTE 206          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|551570706|ref|XP_005771274.1| (hypothetical protein EMIHUDRAFT_102336 [Emiliania huxleyi CCMP1516] >gi|485622482|gb|EOD18845.1| hypothetical protein EMIHUDRAFT_102336 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.0182 bits (175), Expect = 7.494e-11
Identity = 39/83 (46.99%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  201 VIGTVDVFE------RDREGPSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGF 277
            VIGTVD         R   GP LP+RL ++N+ V   FRRQG+ RRL+   E+ A E+ I+ + L+VLA+NE A+ LYE  GF
Sbjct:  106 VIGTVDCVALPAGKGRRAMGPELPQRLLIRNLWVAEAFRRQGIGRRLMDAAEELAAEMHIEFLSLDVLADNEPARRLYEGLGF 188          
BLAST of EWM25517.1 vs. NCBI_GenBank
Match: gi|505039848|ref|WP_015226950.1| (N-acetyltransferase [Halothece sp. PCC 7418] >gi|428691783|gb|AFZ45077.1| GCN5-related N-acetyltransferase [Halothece sp. PCC 7418])

HSP 1 Score: 68.9366 bits (167), Expect = 2.317e-10
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0
Query:  195 GSGSSRVIGTVDVFERDREG--PSLPRRLFLKNMIVDPDFRRQGLARRLLARTEDHAREVGIKEIHLEVLANNEAAKALYEEQGFEYTR-GPLDSLWRLLKIGKVTMTK 300
             + + ++ GTV++     EG  P   +  ++ N+ V P +RRQG+A+RLL   E  +R+ G K+I+L VL NNE A+ LY   G++  R  P  + W L +  +V + K
Sbjct:   87 AASTGKITGTVELGLNCPEGWIPKQYQSTYISNLAVSPQYRRQGIAQRLLRSCEQVSRQWGFKQIYLHVLDNNEGAQKLYARSGYQQCRIEPSVTAWLLKQPRRVLLGK 195          
The following BLAST results are available for this feature:
BLAST of EWM25517.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107283|gb|EWM25517.1|0.000e+0100.00gnat family [Nannochloropsis gaditana][more]
gi|298706850|emb|CBJ25814.1|6.142e-1632.84acetyltransferase [Ectocarpus siliculosus][more]
gi|493499061|ref|WP_006453587.1|3.255e-1134.83N-acetyltransferase [Synechococcus sp. PCC 7335] >... [more]
gi|504989978|ref|WP_015177080.1|3.801e-1142.68GCN5-related N-acetyltransferase [Oscillatoria nig... [more]
gi|551570780|ref|XP_005771311.1|3.941e-1144.94hypothetical protein EMIHUDRAFT_102363 [Emiliania ... [more]
gi|1181368891|ref|WP_084669072.1|4.319e-1126.87hypothetical protein [Spirulina major][more]
gi|493684331|ref|WP_006634463.1|4.499e-1145.00N-acetyltransferase [Microcoleus vaginatus] >gi|33... [more]
gi|501599676|ref|WP_012599262.1|6.655e-1134.92N-acetyltransferase [Cyanothece sp. PCC 7424] >gi|... [more]
gi|551570706|ref|XP_005771274.1|7.494e-1146.99hypothetical protein EMIHUDRAFT_102336 [Emiliania ... [more]
gi|505039848|ref|WP_015226950.1|2.317e-1034.86N-acetyltransferase [Halothece sp. PCC 7418] >gi|4... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5164rna5164Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications