EWM25591.1, cds5084 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|585107383|gb|EWM25591.1| (dna-directed dna polymerase epsilon 2 [Nannochloropsis gaditana]) HSP 1 Score: 268.085 bits (684), Expect = 6.823e-91 Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 Query: 1 MAGRMSSSTRAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 MAGRMSSSTRAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR Sbjct: 1 MAGRMSSSTRAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|299470367|emb|CBN78416.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.4925 bits (197), Expect = 3.936e-15 Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 0 Query: 15 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYD 109 +A+FRAFKL+GL ++ADA A+V V+ EE D A+ AI+ ++K +ER EL S +VD T+ VV LT E DL + + +AF P++ +D Sbjct: 5 QAVFRAFKLQGLGLRADAARAIVRVVEREEGADEAVQAIIRSVKARIERNELSSNVVDVDTVSAVVADLTSREQDLADSSTQMQNAFVRPRLYFD 99
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|813232892|ref|XP_012213236.1| (hypothetical protein SPRG_18408, partial [Saprolegnia parasitica CBS 223.65] >gi|641519142|gb|KDO16056.1| hypothetical protein SPRG_18408, partial [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 70.8626 bits (172), Expect = 8.479e-12 Identity = 38/122 (31.15%), Postives = 70/122 (57.38%), Query Frame = 0 Query: 11 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 A + +FRAFKL+GL++ ADA+ L+ + E + LD +L AIK ++R +L +++V +E+ + L + + ++I ++DAF MP + Y+ +K++S D+ R + P R Sbjct: 2 APGAKQVFRAFKLQGLTLHADALKRLLHEMEMEPTL--GLDDVLFAIKNSIDRSKLINSVVTIEALESALDTLLSVSAENDYQSIQVFDAFEMPSLQYEAMTKTYSVGLDRHRRLHASPNYR 121
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|813171073|ref|XP_012204292.1| (hypothetical protein SPRG_09753 [Saprolegnia parasitica CBS 223.65] >gi|641530924|gb|KDO25023.1| hypothetical protein SPRG_09753 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 70.8626 bits (172), Expect = 9.508e-12 Identity = 38/122 (31.15%), Postives = 70/122 (57.38%), Query Frame = 0 Query: 11 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 A + +FRAFKL+GL++ ADA+ L+ + E + LD +L AIK ++R +L +++V +E+ + L + + ++I ++DAF MP + Y+ +K++S D+ R + P R Sbjct: 2 APGAKQVFRAFKLQGLTLHADALKRLLHEMEMEPTL--GLDDVLFAIKNSIDRSKLINSVVTIEALESALDTLLSVSAENDYQSIQVFDAFEMPSLQYEAMTKTYSVGLDRHRRLHASPNYR 121
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|669161178|ref|XP_008616151.1| (hypothetical protein SDRG_11875 [Saprolegnia diclina VS20] >gi|530732056|gb|EQC30298.1| hypothetical protein SDRG_11875 [Saprolegnia diclina VS20]) HSP 1 Score: 70.8626 bits (172), Expect = 1.005e-11 Identity = 40/124 (32.26%), Postives = 72/124 (58.06%), Query Frame = 0 Query: 11 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDG--ALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 A + +FRAFKL+GL++ ADA+ L+ HE +V+ LD +L AIK ++R +L +++V +E+ + L + + ++I ++DAF MP + Y+ +K++S D+ R + P R Sbjct: 2 APGAKQVFRAFKLQGLTLHADALKRLL----HEMEVEQTLGLDDVLFAIKNSIDRSKLVNSVVTIEALESALDTLLSVSAENDYQSIQVFDAFEMPGLQYEAMTKTYSVGLDRHRRLHAAPNYR 121
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|397621190|gb|EJK66163.1| (hypothetical protein THAOC_12929 [Thalassiosira oceanica]) HSP 1 Score: 63.1586 bits (152), Expect = 3.401e-10 Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = 0 Query: 11 AAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKG-LVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSF 117 A + I R FK RGL++++ A+ AL++VL+ E D L AI++ IK L+ G +V + +E VV +L++D D+ EA+ + DAF P++ +D K FS Sbjct: 3 ATDRKRIARTFKSRGLTIQSTALDALLNVLSRETH-DETLFAIIDEIKDRLITGGGPGGNVVTTSLLEEVVAELSRDAKDVTDEAVQLLDAFQTPRLEFDATRKQFSL 109
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|698823517|ref|XP_009844787.1| (hypothetical protein H257_17620 [Aphanomyces astaci] >gi|574100149|gb|ETV65735.1| hypothetical protein H257_17620 [Aphanomyces astaci]) HSP 1 Score: 65.0846 bits (157), Expect = 1.058e-9 Identity = 34/118 (28.81%), Postives = 67/118 (56.78%), Query Frame = 0 Query: 15 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 R +FR KL GL++ +DA+ L+S LT++ + LD ++ AIK ++R +L+S++V + +E+ + L D + + I +++AF PK+ + +K++ + D R + R Sbjct: 5 RQVFRELKLHGLTLHSDALKRLLSELTNQPTLH--LDDVVFAIKNSIDRSKLKSSVVSQDALESALDTLLNVSSDNDYQCIQVFNAFDQPKLIFHPSTKTYEVSADPTRKLHASSAHR 120
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|1173940795|gb|OQR90110.1| (DNA polymerase epsilon subunit [Achlya hypogyna]) HSP 1 Score: 63.929 bits (154), Expect = 2.249e-9 Identity = 36/121 (29.75%), Postives = 69/121 (57.02%), Query Frame = 0 Query: 12 AANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR 132 AA + +FRAFKL+GL++ ADA+ L+ + + V L+ ++ AIK ++R +L +++V + +E+ + L + + +AI ++ A PK+ Y+ SK++ D+ R + P R Sbjct: 2 AAAKQVFRAFKLQGLTLHADALKRLLREMDEQPSV--LLEDVIYAIKNSIDRSKLTNSVVTQEALESALDTLLSVSTENDYQAIQVFSALEQPKLRYESLSKTYEVVADRGRRLHAAPEYR 120
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|673043945|ref|XP_008875933.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|574468213|gb|ETV95232.1| hypothetical protein, variant 3 [Aphanomyces invadans]) HSP 1 Score: 63.929 bits (154), Expect = 2.326e-9 Identity = 32/109 (29.36%), Postives = 65/109 (59.63%), Query Frame = 0 Query: 15 RAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKER 123 + +FR KL GL++ +DA+ L+S LT++ + L+ ++ AIK ++R +L++++V + +E+ + L D + + I +++AF PK+ Y +KS+ + D R Sbjct: 5 KQVFRELKLHGLTLHSDALKRLLSELTNQPTL--VLEDVVFAIKNSIDRSKLKTSVVTQDALESALDTLLNVSSDNDYQCIQVFNAFEQPKLVYHPSTKSYEVSADPSR 111
BLAST of EWM25591.1 vs. NCBI_GenBank
Match: gi|1176068654|ref|XP_020604187.1| (DNA polymerase epsilon subunit 2-like [Orbicella faveolata]) HSP 1 Score: 63.929 bits (154), Expect = 2.711e-9 Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 0 Query: 4 RMSSSTRAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGALDAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDAFSMPKMTYDHRSKSF 115 +M+++ R I FKL GLS+K DA L VL+ +V+ L+ L+ I V++ L S+LVDR E V+ ++ +D N +A I DAFS+P+ T++ K F Sbjct: 45 KMAATVRGK----IVSTFKLHGLSLKTDASKFLTEVLSPLTEVE--LEDWLDKIVEGVQKQPLTSSLVDREIAEQAVQDCSQSSEDDNDKAFTIIDAFSVPRFTFNPDRKKF 150 The following BLAST results are available for this feature:
BLAST of EWM25591.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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