rna5096, rna5096 (mRNA) Nannochloropsis gaditana

Overview
Namerna5096
Unique Namerna5096
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length955
Alignment locationCM002465.1:105617..106538 +

Link to JBrowse

Properties
Property NameValue
Productdna-directed dna polymerase epsilon 2
Orig transcript idgnl|cribi|Naga_101029g1.3279.mrna
Orig protein idgnl|cribi|Naga_101029g1.3279
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:105617..106538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101029g1gene4920Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5096rna5096-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25591.1cds5084Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5096 ID=rna5096|Name=rna5096|organism=Nannochloropsis gaditana|type=mRNA|length=955bp
CCGCCCGCCTCGCGTGTCAAGCGACACGGCAACGTTTTGGTATTATTTCA
TCGAGCATTGAAGTACTCGCACGGGTATCTGGGCGCGACACTTTCTGCAC
TTTGTGTGCAAAAGACTGGCAAGTCGACTGTGTTGGACCCTCGGAACGCG
AATAAGGCTCCCCACTCGGACTCGAAGGGTGTTACAACTCACTTTTCACG
GGAACACTGTAAACCCTTGTCCAATTTTCCCCACCCCGTCCAGAACACCA
GCATCTACACAATAAATAAACTTTAAAACCTCCTCGTGTGGCCTCGGGTT
CTGTGGACAAGGCTTGAAGCACTCCGCAAACCCCTCCGCTGTCACAAGCT
CTGACAAAAGCTGCGTGAATTGAAGGCGCCATGCCGTCCCTCCTACCGTT
GTCCTGCCTCATGCTCCTTTCCCTGCTGGGCTCATGTGCCTTCTTTCTGC
CTGCACGTCCCTCTTCCTCCTTAATTTCTCGCTCCCTCTTCATCACCTCA
TCACCCTCCCTCCCCACATCTTCATCTGCCTTACATGCTCGCAAAAAACG
GCCCAAAGAGCAAGATTGGATGGAAGTCCTGGCGGAATCGGGGGGTATGG
AAGAGAAGGAGGAGGGCATTTGGCCGGCCGCCCCGGCCCCCTGGGAGGCA
TCCTTCGTCGGGACCTCATTAGATCCGTTGATGCTGGACCCCGATGACTT
TGATGAAGAGGAGTTGGGGATGATGGCCATGTTGAACCAGGAAGAGGAGG
AGGAGGACCTTCCGGTGCTGGAGGTAGAGCAAGTCCTAGACTTGTCCTTA
GGCAACATGGAGTACCGGGAGGACGAGGATTGGGAGGGCGAGGAAAACAG
CGAAAAATACCGACAGGCGCGGAACCGGGCGAAAGCCTCCTCCCTCCATG
ACACCGTGGTGGAGCACGCGGGGAGGTTCTACGAGCATTACAACGGGCGG
TAGGA
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protein sequence of rna5096

>rna5096-protein ID=rna5096-protein|Name=rna5096|organism=Nannochloropsis gaditana|type=polypeptide|length=132bp
MAGRMSSSTRAAANRAIFRAFKLRGLSVKADAVAALVSVLTHEEDVDGAL
DAILNAIKGLVERGELRSTLVDRATIETVVRQLTKDEDDLNQEAIAIWDA
FSMPKMTYDHRSKSFSFTFDKERPFNPDPGAR
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mRNA from alignment at CM002465.1:105617..106538+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5096 ID=rna5096|Name=rna5096|organism=Nannochloropsis gaditana|type=mRNA|length=922bp|location=Sequence derived from alignment at CM002465.1:105617..106538+ (Nannochloropsis gaditana)
AGTCTATAAAACAAAATTGGACTCATACAAAGACGATTTCACCTCGATGG
CAGGACGCATGTCATCTTCGACGAGGGCGGCGGCCAATCGTGCCATTTTT
CGTGCATTCAAGTTGCGTGGATTGAGCGTCAAAGCTGATGCTGTGGCTGC
CCTTGTATCTGGTAAGTTGTGTGGGAAATATGAATGAtagagaagagagg
gaagaaaagacgaGAAAATTGTCTGAATTTCCAATAAGAATGATGACACG
TATTTGATTTGTCGAAAACACAAGGGTACTGGCAAATATTTGCATCGATG
TGCGTGAGTGGCCTCCTCTAAACGCCACACGTGACGGAGTCAAATCCTCC
CACTCGTTCGAATTCTCTTGCTTTCTACCCTCATCCTTACTATTCTTTTG
CTTTTCACAACATTTCCTGCCTGTACACAGTCCTCACTCACGAAGAAGAT
GTAGACGGGGCCCTCGATGCCATATTAAATGCGATCAAAGGTCTCGTTGA
ACGGGGGGAGCTCCGCTCGACCTTGGTAGACAGAGCGACGATAGAAACAG
TCGTGCGGCAGTTGACAAAAGATGAAGATGACCTGAATCAGGTACAGAGG
CGACTAATGGGGTCATACGCCCAGTGGACGCGGAAAGTCCCGCAtgaccc
cctcttcccccccccttacatctcctccttctcaccctcctgcctccatc
cctcctcctcctccccccaaccccacctccctcgcaccctgtcccctcct
gtcttgtGATTCTTCATTACCTCGTCTTTTCCACCTTCCGTGCGCGCAGG
AAGCCATTGCTATCTGGGATGCTTTCAGCATGCCGAAAATGACGTACGAT
CACCGGAGCAAGAGTTTCTCCTTCACGTTCGACAAAGAGCGGCCGTTCAA
CCCGGATCCAGGGGcacggtga
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Coding sequence (CDS) from alignment at CM002465.1:105617..106538+

>rna5096 ID=rna5096|Name=rna5096|organism=Nannochloropsis gaditana|type=CDS|length=1197bp|location=Sequence derived from alignment at CM002465.1:105617..106538+ (Nannochloropsis gaditana)
ATGGCAGGACGCATGTCATCTTCGACGAGGGCGGCGGCCAATCGTGCCAT
TTTTCGTGCATTCAAGTTGCGTGGATTGAGCGTCAAAGCTGATGCTGTGG
CTGCCCTTGTATCTGTCCTCACTCACGAAGAAGATGTAGACGGGGCCCTC
GATGCCATATTAAATGCGATCAAAGGTCTCGTTGAACGGGGGGAGCTCCG
CTCGACCTTGGTAGACAGAGCGACGATAGAAACAGTCGTGCGGCAGTTGA
CAAAAGATGAAGATGACCTGAATCAGGAAGCCATTGCTATCTGGGATGCT
TTCAGCATGCCGAAAATGACGTACGATCACCGGAGCAAGAGTTTCTCCTT
CACGTTCGACAAAGAGCGGCCGTTCAACCCGGATCCAGGGGcacggtgaA
TGGCAGGACGCATGTCATCTTCGACGAGGGCGGCGGCCAATCGTGCCATT
TTTCGTGCATTCAAGTTGCGTGGATTGAGCGTCAAAGCTGATGCTGTGGC
TGCCCTTGTATCTGTCCTCACTCACGAAGAAGATGTAGACGGGGCCCTCG
ATGCCATATTAAATGCGATCAAAGGTCTCGTTGAACGGGGGGAGCTCCGC
TCGACCTTGGTAGACAGAGCGACGATAGAAACAGTCGTGCGGCAGTTGAC
AAAAGATGAAGATGACCTGAATCAGGAAGCCATTGCTATCTGGGATGCTT
TCAGCATGCCGAAAATGACGTACGATCACCGGAGCAAGAGTTTCTCCTTC
ACGTTCGACAAAGAGCGGCCGTTCAACCCGGATCCAGGGGcacggtgaAT
GGCAGGACGCATGTCATCTTCGACGAGGGCGGCGGCCAATCGTGCCATTT
TTCGTGCATTCAAGTTGCGTGGATTGAGCGTCAAAGCTGATGCTGTGGCT
GCCCTTGTATCTGTCCTCACTCACGAAGAAGATGTAGACGGGGCCCTCGA
TGCCATATTAAATGCGATCAAAGGTCTCGTTGAACGGGGGGAGCTCCGCT
CGACCTTGGTAGACAGAGCGACGATAGAAACAGTCGTGCGGCAGTTGACA
AAAGATGAAGATGACCTGAATCAGGAAGCCATTGCTATCTGGGATGCTTT
CAGCATGCCGAAAATGACGTACGATCACCGGAGCAAGAGTTTCTCCTTCA
CGTTCGACAAAGAGCGGCCGTTCAACCCGGATCCAGGGGcacggtga
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Synonyms
Publications