rna5011, rna5011 (mRNA) Nannochloropsis gaditana

Overview
Namerna5011
Unique Namerna5011
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length315
Alignment locationCM002464.1:925611..925982 -

Link to JBrowse

Properties
Property NameValue
Productglutamate cysteine ligase
Orig transcript idgnl|cribi|Naga_103405g1.4014.mrna
Orig protein idgnl|cribi|Naga_103405g1.4014
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:925611..925982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103405g1gene4839Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5011rna5011-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25674.1cds4999Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5011 ID=rna5011|Name=rna5011|organism=Nannochloropsis gaditana|type=mRNA|length=315bp
ATGCATACGACGCCCGTCTGTCCTCCACGCGCCTCCTCTCTTCGGAGAGA
GCGTCGAAAGTGGGAGCTCGTTGCAGGCATCGCGGTGATGCGAGACGAAG
AGAGAGAAGGAGATGAGTGGGGAGGAGGCGGTGGTGTAAAGGGAGGTGAA
GGCAGTTTTGTTATGGGCCTTGTAGGGTGCGTCAACGAACGAGTCCAACG
AGGGAAGAAAAGCAACGGTCCTTGCCATGAAAAAAAAATAGGCAAGAAGC
GCCCATACGTTGGCAGGCATTGTGTGGCACTAAAATTCCTCTTTTCCTTT
GGCAGACAGAGGTAG
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protein sequence of rna5011

>rna5011-protein ID=rna5011-protein|Name=rna5011|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MHTPLSLPPSLPPSLPSCQVGRYLELVRRRATGEVLTTAAYIRAYVLAHP
DATRSCHSPSLLISCVIATI
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mRNA from alignment at CM002464.1:925611..925982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5011 ID=rna5011|Name=rna5011|organism=Nannochloropsis gaditana|type=mRNA|length=372bp|location=Sequence derived from alignment at CM002464.1:925611..925982- (Nannochloropsis gaditana)
ATGCATACCCCTCTCTCCCTCCCGCCCTCCCTCCCGCCCTCCCTCCCTTC
TTGCCAGGTGGGACGTTATCTGGAGCTGGTGCGTCGACGGGCCACGGGGG
AGGTGCTGACGACAGCTGCCTACATCCGTGCCTACGTGCTTGCTCACCCC
GAGTATAAGGTAGGGAGGGAGGGAGAGAGGGAGAGAGGGAGAGAGGGAGG
GAGAATGAGAGAGAAGAAATGCTCTTTTCGTCTTTGCCCTTACTTCCCTT
TTCCCCTACACGCCCCCTTCTGATTCTTCTCCCCTGCCCCTCCATCCCTC
CCCCCTCCCAGCGCGACTCGGTCGTGTCACAGCCCATCGCTGTTGATCTC
CTGCGTCATTGCCACGATATAG
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Coding sequence (CDS) from alignment at CM002464.1:925611..925982-

>rna5011 ID=rna5011|Name=rna5011|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002464.1:925611..925982- (Nannochloropsis gaditana)
CGCGACTCGGTCGTGTCACAGCCCATCGCTGTTGATCTCCTGCGTCATTG
CCACGATATAGATGCATACCCCTCTCTCCCTCCCGCCCTCCCTCCCGCCC
TCCCTCCCTTCTTGCCAGGTGGGACGTTATCTGGAGCTGGTGCGTCGACG
GGCCACGGGGGAGGTGCTGACGACAGCTGCCTACATCCGTGCCTACGTGC
TTGCTCACCCCGACGCGACTCGGTCGTGTCACAGCCCATCGCTGTTGATC
TCCTGCGTCATTGCCACGATATAGATGCATACCCCTCTCTCCCTCCCGCC
CTCCCTCCCGCCCTCCCTCCCTTCTTGCCAGGTGGGACGTTATCTGGAGC
TGGTGCGTCGACGGGCCACGGGGGAGGTGCTGACGACAGCTGCCTACATC
CGTGCCTACGTGCTTGCTCACCCCGA
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Synonyms
Publications