rna4998, rna4998 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4998
Unique Name	rna4998
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	486
Alignment location	CM002464.1:877732..879662 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100768g1.9602.mrna
Orig protein id	gnl\|cribi\|Naga_100768g1.9602
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:877732..879662 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100768g1	gene4827	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4998	rna4998-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25687.1	cds4986	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:877732..879662-
coding sequence from alignment at CM002464.1:877732..879662-

mRNA sequence

>rna4998 ID=rna4998|Name=rna4998|organism=Nannochloropsis gaditana|type=mRNA|length=486bp
ATGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGAGTGCGTGGCTTGC
AGGTAGGCGCGGTACACTATACATAGGCAAGGCTTATAAAGTGGAGTGGA
CATGGGAGAGCGAAGAGCAAAAATGTCAGAAGGACTTAGGGACAGGATTT
AGGTCGTCGTGGGGGCACTTTACAGGTTACCCCGGGTCATTCCTCTCTCC
TCCCTCGCCCCACAAGGAAAGACATGATGCAAGGCGTGGGCGTGAGAGCC
ACGCGAGGATGTTGTGTCGGGTGGGTGGTAGGATGCAGACACCTTGTGCC
CTGCTTTCGTTTGAAAGTCATCCATGCTTGACACCCGGCGTACATATTCG
CGAGGCGGCACCCATCCTGGCCGGGGTGTTCGCCAAGTGCAAAGACGTGG
CACAAGAGCTCAAAACGAAAATGAACATGACCACACGTCTCCAAGCCGGA
CTGCCCGGCGGCGTCAAAGCTTCCCCGGCGTTGTGA

protein sequence of rna4998

>rna4998-protein ID=rna4998-protein|Name=rna4998|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MALEMETSHSPLKAHHEGGIMEASPGSYDCESQSMDGWSSDSVDSSAPHS
YMWRDIRCSYDANMSGRGGKQVEIEVLHGIDGQLEAGQMLAVIGP

mRNA from alignment at CM002464.1:877732..879662-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4998 ID=rna4998|Name=rna4998|organism=Nannochloropsis gaditana|type=mRNA|length=1931bp|location=Sequence derived from alignment at CM002464.1:877732..879662- (Nannochloropsis gaditana)
CAAGAACCAGGACCAGTGGTAATCCATGACTAACCAATGTGGTCATGCTC
TGTTCAGAAGTGAAAGGGAATGTTGGAAAACATGTGAAGGGAGAATAACA
CAAGCGCACGGTACATAGCACGGAAGGAGTCAAACCGTCACTAAAAAAGA
TCCCTCGCGCAACATTTACACCACAAGCCTCCAACGCAAAAGCAAATCCG
ACTGAACTTCATCCCCCCTGGCCTCAAAGTTGACAACCAGCATGCTTCTC
TCACGCCCGGGACGAGGGGCAGAGCCGCGAAGACACTCTGTGTTGACGGT
AAGGCGTAGAATAAAGGGATTAACTGCGCCTAGGACCACGTCGCCGCATC
CCTCAGGCTCCAGCCGTACGAGGCGCGCCGGCACGATTTTGATGACTAGG
TAATTCGCCGTCGGGCCCGGTAAAACAAAGGCACGTGTCTCTCAATGGCA
TAAAGGCACGTGCTTAGGCTGGTGGACGTGCCGTTTTAGGTTGGCCCGGT
GAATTTTTGGCGTTTGCGCAGTCTTCCCGGATGCCGTAGAGGCGTCGGAA
TTATCTTTTGCTTTTTCTCTCAAATCTATTTTCTGACTTTCACAACTGTC
CCGGTGCCTTGACTTTTCAATCCCGTCATGTTGCTGGGGGCCTTCTATGA
AATTAAGGGGTCGTGTGATGGATGGTTTGGACCCAGTCGTCGGAAATGCA
TTAATTTGGCATGAATATTCTGATGCTGCCCTGCCCGAGCGGTTTTGAGG
GATTGGGCCAGGGCCCGGGCAAGAAGGAAGTGTCATTGATATATGTGCCA
ACTGTGTCTCAAGCTTGATGTGCTGCACATGGGTTAAACTATACTGGTGC
TGGCAAGTGCGAGGGCAGGCGGAGAATGGAAATGGAATCGAATGGCCGTC
GTTTTTTTTTTTCGAAAAGACCGCCCAGTACGAGCAGGGTATTCAGTAAA
ACGACCGTAAACCCCCTTAATCGAATCATATTTTTACCCCACACCAACGC
CACATTGGGACACCTGCTCTGCATTTTCCAGCGGAATCGACGTGTGGACA
GGCAATTGAGGCCTGTCGTGGCACTCTGCTCGCAATATCACAGATGGCTT
TGGAAATGGAGACAAGTCACTCGCCTCTGAAGGCTCATCACGAAGGTGGC
ATCATGGAGGCCTCACCGGGTAGCTACGACTGCGAGTCACAAAGGTAAGA
AACACGAGGTCGCAAGGAATGGAGAGAGAGGCATGGGTAAGGACTGGGAG
GGTGGTGATGGTAGTTCGAGGCAGGCGTCTTGGCTGAGGCGGTGCCACAC
AGTAGAGGAAACGGCAGGATGGGGTACATCCCAGTCTGCTTCACTGCCGA
GTTGACGAAAGCAGATAGGCACGAGCAACGAGAGGGGTGCCTTTCTAGGG
TGGTCGGTGCAGACTGGAGTTTTACTTGGGCCCAAGGCGCGCGCGCCAAG
GCCAAGACCTGTCTTCTTATTTCCCTCCTCCCTTCCCCTCCTCTCATCCT
CATTTAGCATGGATGGCTGGTCGTCTGACAGTGTGGACTCTTCGGCCCCG
CATTCTTACATGTGGCGTGACATTCGATGCTCGTACGATGCGAACATGAG
CGGTCGAGGGGGAAAGCAAGTAGAGATTGAGGTTAGGAAGGGAGAGAGGG
AGGGCGGGGGGGCAGGGCGGGAGGGAGGAAAGGAGGCCCCAGAAGGGAAA
GGGTCTGAAAAGGGAATGCGCAAAAGGGGGAAGAGCGGCGGACGTGATCG
CAAGAAGGCGAAGCTCTTTTCGTGATTTCCCATGAAAATCCCTTCCCCTC
CTCCCCTCCCTCTTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
TCCCACCCTCCTCTCTCCAGGTGCTGCACGGCATCGACGGACAATTGGAA
GCGGGGCAAATGCTGGCAGTGATCGGGCCTT

Coding sequence (CDS) from alignment at CM002464.1:877732..879662-

>rna4998 ID=rna4998|Name=rna4998|organism=Nannochloropsis gaditana|type=CDS|length=858bp|location=Sequence derived from alignment at CM002464.1:877732..879662- (Nannochloropsis gaditana)
GTGCTGCACGGCATCGACGGACAATTGGAAGCGGGGCAAATGCTGGCAGT
GATCGGGCCTTCATGGATGGCTGGTCGTCTGACAGTGTGGACTCTTCGGC
CCCGCATTCTTACATGTGGCGTGACATTCGATGCTCGTACGATGCGAACA
TGAGCGGTCGAGGGGGAAAGCAAGTAGAGATTGAGATGGCTTTGGAAATG
GAGACAAGTCACTCGCCTCTGAAGGCTCATCACGAAGGTGGCATCATGGA
GGCCTCACCGGGTAGCTACGACTGCGAGTCACAAAGGTGCTGCACGGCAT
CGACGGACAATTGGAAGCGGGGCAAATGCTGGCAGTGATCGGGCCTTCAT
GGATGGCTGGTCGTCTGACAGTGTGGACTCTTCGGCCCCGCATTCTTACA
TGTGGCGTGACATTCGATGCTCGTACGATGCGAACATGAGCGGTCGAGGG
GGAAAGCAAGTAGAGATTGAGATGGCTTTGGAAATGGAGACAAGTCACTC
GCCTCTGAAGGCTCATCACGAAGGTGGCATCATGGAGGCCTCACCGGGTA
GCTACGACTGCGAGTCACAAAGGTGCTGCACGGCATCGACGGACAATTGG
AAGCGGGGCAAATGCTGGCAGTGATCGGGCCTTCATGGATGGCTGGTCGT
CTGACAGTGTGGACTCTTCGGCCCCGCATTCTTACATGTGGCGTGACATT
CGATGCTCGTACGATGCGAACATGAGCGGTCGAGGGGGAAAGCAAGTAGA
GATTGAGATGGCTTTGGAAATGGAGACAAGTCACTCGCCTCTGAAGGCTC
ATCACGAAGGTGGCATCATGGAGGCCTCACCGGGTAGCTACGACTGCGAG
TCACAAAG

Synonyms

Publications