rna4975, rna4975 (mRNA) Nannochloropsis gaditana

Overview
Namerna4975
Unique Namerna4975
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3627
Alignment locationCM002464.1:808558..809019 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100154g14.6608.mrna
Orig protein idgnl|cribi|Naga_100154g14.6608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:808558..809019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100154g14gene4803Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4975rna4975-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25710.1cds4963Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4975 ID=rna4975|Name=rna4975|organism=Nannochloropsis gaditana|type=mRNA|length=3627bp
ACCCTTATACTTGTTTTCGCCATTCTCATACTACCTGACCCCGTGTGTGC
AACCCCCTAATATTTTTTTGGGTCAGGTGAACGGGCACTGCTTCCAACTA
AACACTAGTACAAATGGCTTCTACCGAAGAAAAAGAAGACAACAATCGTC
TGCTGAAACACGAGACGACAGAGCTGATATCTGCAGAGGAGAGCACTGGG
AGAAGCGTACAGCCGATCCACTCCAAGTCAGCCACAACGGCAACGACGCC
TGGTGTGATAGCGCAATCGCATGAATGGAACGGACCACAATATACACTTA
GCAACATAAATGGTCCCGTTCATCCGTCATTCGCCACTCCCTTCTCTGGA
ATGGTAGATATGACAGGCTGCACGAATGGCGACTTGCTTCTCAAAGGAAG
CAGCTTTGCGTCCATCTCCCCCTTACGACCTGAAGCGCAGTCCTCTGAAG
GATCCACCATCCCCATGCCTCATGTTGACGTCTCTACCCTCTCGGATATC
CATAGACTGGCTCTTTTGGAGGACACGATCGCGCTCAGCCCCAGTAAGAA
AGGGAGCTCACATGACATAGTCTCCGGCCGCTCCTTGCCATGGAAAACAG
CACCACTAACATCCAGCGTCTATAGGCCATTATCACCGGACGACAGCTCA
ATGGTCTCATTCACCACCACGGGGGCGGTGGTCATCGGCGAAGACGTCTC
GAGGCGCGGCCTACAGGACACGCAAAATACTATCGCCTCGTGTTCCTCGT
GGACGAACAGCAGCTTGTCTAGCACGACTACCGTGAGATTTTTGAAATCT
ACAGCGGAACTGCCCAAGGAGGAAGAGAGTGTATCAGGAGAAATTGCTGA
CGCGGTGGACAATGCGCACGTTTCTTCCGTTGGAGCCGCATTGCCTCAGG
AGCACAGCTTGGGTGCATACCTCCCCGGGTGTCCCCCTCCGCCCGCACCA
CAAACACCTGGTCCCAGCAGGACCGGACAACGCGTCCAACGCCTCCTTCG
CCTGAACTTACAGGAGCTACCAATGAGTCATACCGGCAGAGGTGCTGATT
TGGGGCAGGAAGCTCTCCTTGCGGGCTCGTGTAGCACGGCCCCGACCAGC
AGCAGCGGAGGCAGCTGCCAGCCCCTGGAAAGCGATGGCCTCCGACGGGT
GGCTTACGTGGACGATAGGAGCGGGATGGCCATCCTGCAGACGTCAGACG
GGGACATTGTTCGCTACGAGAATGTCCAAGGCCGGGATGGACGCGTGACG
GCCCATATTCAGGTGGCCCACCGCTTTGCGATTGGGAGCAAAGGCACGTA
CACTTACCCTTCCGACAGCATTTCTAGCCAAGACACCCAGAAGGGCGACA
GCCCCGTCCGTCGACCGGGGCGCGGCGTCGGCCAACGCCCTCTCCCCAAG
TCTGTGACTGGGCCGCCGAGGCCTGGCATTTCCACCTCCTACCCCCCCGC
GGGAGGGCTTCTCGACGAGGCGGGGGACAATCTCCTAGAGCTGGGGTTTC
TGGGGCGCGGTGCCGGCTCTGTGGAGGTGGTCAAGGCTTTGCATTTCCCG
ACCATGAAGATGGTGGCGGTCAAAAAGGTGCCCATCGACAAGCCGAGCAA
GCTCAGCCAAGCCATCCACGAACTCGAACAGCTTTTGAGCAACCAGGTCA
TGATCCGAGAGCGCATTGCAGACGACTCAACACGAGTGCACCCGTGTCGT
TTTTCCCTGACGACCACGGCGGGAGGGGGGGGGGGAAGGGAGTACTGCCC
TTTTATTGTCAGCCTCTACGATGCCTACAAGCACCATTCCCAGATCCGCC
TGGTCATGGAATACATGAACGGCGGGTCGCTTCAAGATTTAGTCGACAAG
GGAGGTTCTCGGGACGAAGCTCTCTTGGCCAAGATCGCCTACAACGTGTT
GCGAGGCCTTAGTTACCTGCACAGCCAGGGCAAAATCCATCGGGATGTCA
AGCCTGGCAATCTCTTGATCAACTCCAAAAATTTCGTAAAACTGGCTGAT
TTTGGGTTGGCCGCAAGCCTGGATAAGGTCAAATCGCAGACGGTTGGAAC
CAATCGGTACGTTCCGCCCGAAATGTTGGATTCCAAGATGGAGGACGAGG
AGATCGAGGGAGAAGTAGCCGAAGAGGCCACGCAAGCGGACGGACGCAAG
GCCGCAGCCCCAGTCCCAAGCACGCCGCCTCTCAAAGGGCGTTGGAGCAT
TAAGGGTGACATCTGGAGCTTTGGGCTCTCGCTCTGGGCCATCGCAGAAG
GCAAGTGTCCGTTCGCCCACGTGGCAGACGATGAGGTCCTGATTGCGGCC
AGTGTGATTGACGAGCCGGCCCCTCGGATTTCCGAACGGTTCTCGCCGGA
GTTTCGGGATTTTATCGAGGCGTGCTTGCGCAAAGATCCGCATCGACGGG
ACTCGGCTGACATTCTCTTGCAGCATCCGTTCATACGGTCCAAGGCCTAC
GTGCACCTCAACGAGCGGGAACTCGAGAACGTTGCGGATAAAGTCACCCT
CTACTTCCAAACCCACCCCGCCAAGGCATTGCTTACCCCTGCCATGGTCC
GGACATTGGCGGAGGAGATCCATTTGGATGAGCGATACGTGGGGGAGCAC
CTAAGAGAGGCCCTGGCCGGTCTCCCCTACGTTGATACAACGGACGGACC
TCCTCCCTTGACACCGCCTACCGGATCGGAAAGGGAGGACAAGGAGGGAC
AAGGAAGCCCGGACGGGCTAGAAGGTAGAGAAAAGGAGAAGCGAAATGTG
CCGTGTTGTGCGTTTATGTAAAAATGTCAGGGGTGGCGATGGCGTGGCCA
GGGGCCGGCGAGGTACCTCGTAGTGATGATAATGTCCAGCGCAGCTTGCC
GCAGTGTACGGTAAAGGATACTAATGTGCAAATTGGTGGGAACCCATTCC
CTGGAAATTTTTATAAATTAAGAAGATGATTGCATCTCTAGAGCAACACA
ATGAAATTGTACTACGTAGCAGACCGATGAAGCATTTTCTTCCTGTACCG
CACATGCCTACTTATTTTTCATATTTTTCCACATGCTCCCAGCTGGAGTT
CCGCTTGTCGGCGTAATATTGCTGTCATCGATCTCAGAAGGCATTTGCTG
AGCCTGCTCTTCCTTATGAAGTCTACCCTGTTGCACCCTCGCCGTCCTTG
CTTTGGCGTCATCGGAGAAATAAGGCAAGTAGACCGTGGCCACTCCGAGT
CCTGCCGCTGTCAAGCCAACACAGAAGGTAACAAGAAATTTACCAGCGTT
CGGGTTGACTTTCGGAGGCATACTTGCTTGAGTGCGAGACGATGAAGAGA
ATCGATGAGTTGTGTAGGAGAGATGAGGCGGGGAGGTTATGACTTACGTG
TGCTTCAGAGAAAGCTCCTGTAAAGATGATTGTGACGAAAGAACGCAGGC
ACGTAAGGTACATGTTTAATGCTTGTAGATTTTATTCCCCGTGACGCACC
ATGCTTTCAAATCAATCACAACCGTGCTACACTTTAAAAGTGGGAAGGAA
AGAGTGTTGGGAGGGAGGTCATCTCCTTTTGCACGTGTCGGGTATAGTGC
TTCATATAGTGCTTCGTTTTCAGACCGTCCGCTGCGCAAGTGTAGGAATC
AAGTGTCGCAAAATATATTGATTAAGG
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protein sequence of rna4975

>rna4975-protein ID=rna4975-protein|Name=rna4975|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MPPKVNPNAGKFLVTFCVGLTAAGLGVATVYLPYFSDDAKARTARVQQGR
LHKEEQAQQMPSEIDDSNITPTSGTPAGSMWKNMKNK
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mRNA from alignment at CM002464.1:808558..809019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4975 ID=rna4975|Name=rna4975|organism=Nannochloropsis gaditana|type=mRNA|length=462bp|location=Sequence derived from alignment at CM002464.1:808558..809019+ (Nannochloropsis gaditana)
TTTACAGGAGCTTTCTCTGAAGCACACGTAAGTCAtaacctccccgcctc
aTCTCTCCTACACAACTCATCGATTCTCTTCATCGTCTCGCACTCAAGCA
AGTATGCCTCCGAAAGTCAACCCGAACGCTGGTAAATTTCTTGTTACCTT
CTGTGTTGGCTTGACAGCGGCAGGACTCGGAGTGGCCACGGTCTACTTGC
CTTATTTCTCCGATGACGCCAAAGCAAGGACGGCGAGGGTGCAACAGGGT
AGACTTCATAAGGAAGAGCAGGCTCAGCAAATGCCTTCTGAGATCGATGA
CAGCAATATTACGCCGACAAGCGGAACTCCAGCTGGGAGCATGTGGAAAA
ATATGAAAAATAAGTAGGCATGTGCGGTacaggaagaaaatgctTCATCG
GTCTGCTACGTAGTACAATTTCATTGTGTTGCTCTAGAGATGCAATCATC
TTCTTAATTTAT
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Coding sequence (CDS) from alignment at CM002464.1:808558..809019+

>rna4975 ID=rna4975|Name=rna4975|organism=Nannochloropsis gaditana|type=CDS|length=264bp|location=Sequence derived from alignment at CM002464.1:808558..809019+ (Nannochloropsis gaditana)
ATGCCTCCGAAAGTCAACCCGAACGCTGGTAAATTTCTTGTTACCTTCTG
TGTTGGCTTGACAGCGGCAGGACTCGGAGTGGCCACGGTCTACTTGCCTT
ATTTCTCCGATGACGCCAAAGCAAGGACGGCGAGGGTGCAACAGGGTAGA
CTTCATAAGGAAGAGCAGGCTCAGCAAATGCCTTCTGAGATCGATGACAG
CAATATTACGCCGACAAGCGGAACTCCAGCTGGGAGCATGTGGAAAAATA
TGAAAAATAAGTAG
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Synonyms
Publications