rna4967, rna4967 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4967
Unique Name	rna4967
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	543
Alignment location	CM002464.1:789549..791267 -

Link to JBrowse

Properties


Property Name	Value
Product	fructose-bisphosphate aldolase
Orig transcript id	gnl\|cribi\|Naga_100154g7.6613.mrna
Orig protein id	gnl\|cribi\|Naga_100154g7.6613
Gene	FBA1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:789549..791267 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
FBA1	gene4795	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4967	rna4967-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25715.1	cds4955	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:789549..791267-
coding sequence from alignment at CM002464.1:789549..791267-

mRNA sequence

>rna4967 ID=rna4967|Name=rna4967|organism=Nannochloropsis gaditana|type=mRNA|length=543bp
ATGGGCAGCGTGGCGTCTTATGGTTCCGTGGAGAGGAGAAGCCTCCAGCT
GATTACATGGGGCAGACGATGGATGTGGAGGGAGGGGGGGAGGTCGGGTG
GGCCACGGGCCTTATGGAGTGGAAGGCAGGCTTGCGACGGAGAAATGGGG
AGAGAGAGGGGATGCCGTGACCCTCCACTGCCCACGGTCGGGGAAGCGAG
TCAGAGAACATCTAGGGCGGGAGTGAGTGGATGTCATCTTGAGAGGGTGG
AGTCCAGAGCCTCGATCGCACGTCGAACCGGATTGTCTAGCCCCTCTCTG
TGCGACCAGAACGGAGACGAGGAAAAAGTGCCCGTAACAATTGGACTCTG
GCGAGATGTCGGTCGGGGCGTGCGGGGGCTATGGCGTCGGTCGTGCGTAT
GTGTGGTTATGAATGTGATCTATGTGAGTGAGGTACCGTGGGCAGGGGAG
GCGAGAGGAAGAGGGGCCAACCGGCGTGGAAGGCCCGGGATGTGTTTGGA
GGCTGCGGTCGTCGAGAAGGAACTATCGTCCACTTCCCTTTAA

protein sequence of rna4967

>rna4967-protein ID=rna4967-protein|Name=rna4967|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MCYDARISHVSPGFTVPAHGYSHTPIILQMARLFVTVAALVAACATVNAF
QVPRMSLDKYRSELAETAKKIASPGKGILAVDESTKTIGKRLQSIGVENT
EANRQAYRGLLFTTPKLGDFISGAILYEETLFQNNVDGTPFVKNLASVGV
IPGIKVDMGLSPLPGGHPVETWCTGLDGLVERAQKYYAQGARFAKWRAVL
QITSDGAPSELSIQENAWGLARYARAVQEGGLVPIVEPEILMDGDHNIDT
TARVQERVLAAVYKALSDNGVFLEGSLLKPSMTLPGADCGESVTPEKIAE
YTVRTLERHVPSSVPGVMFLSGGMSEEEASINLNALNKRERKGPWSLSFS
YGRALQQSCLKAWMGKAENVPAARTALMARAQANSEANLGKYVAGSQPSA
DETLFVKGYKY

mRNA from alignment at CM002464.1:789549..791267-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4967 ID=rna4967|Name=rna4967|organism=Nannochloropsis gaditana|type=mRNA|length=1719bp|location=Sequence derived from alignment at CM002464.1:789549..791267- (Nannochloropsis gaditana)
ATGTGTTATGATGCACGTATTTCTCACGTTTCCCCTGGTTTCACCGTTCC
TGCACATGGTTACAGTCACACTCCCATAATCCTTCAGATGGCTCGCCTTT
TTGTCACCGTTGCCGCCCTGGTGGCCGCCTGTGCCACGGTAAACGCGTTC
CAAGTGCCGCGCATGTCCTTGGACAAGTACAGGAGCGAGCTTGCTGAGAC
CGCCAAGAAGATTGCTTCCCCCGGTACGTTGGATAGAGGGGATGAATTAG
GAAGGATAAAGCCGGGGGCAAGAAGAGGAACGCCTGTGTAACGGGAGGAA
ATGGAAAGATTCAAACCCCGCCATCGATATTCGAACGACCATGACTGAGT
ATCTTAAATTAATCTAGTGAATATATGGCTCGGAAGTAAGTGCCATTGTG
TTGGCTGGTTGGGAAGCATAACAGACGGCGGCGAGGCCGAGACTGATCAC
CGCCCTTTTACTTATCACCATTCATGCGAACCTTTCTCGTCCTTCTCAAT
GTATGTACACAGGCAAGGGTATCCTGGCCGTGGACGAGTCCACCAAGACC
ATTGGCAAGCGCTTGCAGTCCATCGGGGTTGAGAACACAGAGGCCAACCG
TCAGGCTTACCGAGGCCTCCTCTTCACCACCCCCAAGCTCGGCGACTTTA
TCTCTGGGGCCATCCTGTACGAGGAGACCCTCTTCCAGGTCGGTACCCAG
AGGCTTTCTTTGGTTCGGGGGGACCATGAAGAGGTTGTCGTCACGCCCAC
AGGCTGGCAATTGTCCCGGAGAAAGCAGGCGTGAGACCCGTTGCAGTCGC
TTCGCCTCTTTTTCCCCACCCCCCCAAGGCCTTCCCCGGCAGCCTCCATC
TAATTCCTCTCTGCCCGCCCCTTTTTCAACAGAACAACGTGGACGGCACC
CCCTTCGTCAAGAACCTGGCCTCCGTGGGCGTGATCCCAGGCATCAAGGT
GGACATGGGCCTCTCCCCCCTCCCCGGCGGGCACCCCGTCGAGACCTGGT
GCACAGGCCTGGACGGCCTGGTGGAGCGCGCCCAGAAATACTACGCCCAA
GGCGCCCGTTTCGCCAAGTGGCGCGCGGTGTTGCAGATCACGTCGGACGG
GGCTCCCTCTGAGCTTTCCATCCAGGAGAACGCCTGGGGCCTGGCTCGGT
ACGCCCGGGCCGTGCAGGAGGGTGGCCTGGTGCCCATCGTGGAGCCTGAG
ATTTTGATGGACGGCGACCACAACATCGACACCACGGCCCGCGTCCAGGA
GCGTGTGCTGGCCGCGGTCTACAAGGCCTTGTCGGACAACGGGGTCTTCC
TGGAGGGCTCCCTCTTGAAGCCCTCCATGACCCTCCCCGGCGCGGACTGC
GGCGAGTCTGTCACCCCCGAGAAGATCGCTGAGTACACCGTCCGCACCCT
GGAACGCCACGTCCCTTCCTCCGTTCCCGGTGTCATGTTCCTCTCGGGCG
GGATGTCCGAGGAGGAGGCTTCCATCAACCTGAACGCCCTCAACAAGCGC
GAGCGCAAGGGCCCCTGGTCCCTCTCCTTCTCCTACGGACGCGCCCTCCA
ACAATCCTGCCTCAAGGCGTGGATGGGCAAGGCCGAGAACGTCCCCGCGG
CACGCACAGCCCTCATGGCCCGCGCGCAGGCCAACAGCGAGGCCAACTTG
GGCAAGTACGTGGCGGGCTCCCAGCCGTCCGCGGACGAGACCCTCTTCGT
GAAGGGATACAAGTACTAA

Coding sequence (CDS) from alignment at CM002464.1:789549..791267-

>rna4967 ID=rna4967|Name=rna4967|organism=Nannochloropsis gaditana|type=CDS|length=3708bp|location=Sequence derived from alignment at CM002464.1:789549..791267- (Nannochloropsis gaditana)
AACAACGTGGACGGCACCCCCTTCGTCAAGAACCTGGCCTCCGTGGGCGT
GATCCCAGGCATCAAGGTGGACATGGGCCTCTCCCCCCTCCCCGGCGGGC
ACCCCGTCGAGACCTGGTGCACAGGCCTGGACGGCCTGGTGGAGCGCGCC
CAGAAATACTACGCCCAAGGCGCCCGTTTCGCCAAGTGGCGCGCGGTGTT
GCAGATCACGTCGGACGGGGCTCCCTCTGAGCTTTCCATCCAGGAGAACG
CCTGGGGCCTGGCTCGGTACGCCCGGGCCGTGCAGGAGGGTGGCCTGGTG
CCCATCGTGGAGCCTGAGATTTTGATGGACGGCGACCACAACATCGACAC
CACGGCCCGCGTCCAGGAGCGTGTGCTGGCCGCGGTCTACAAGGCCTTGT
CGGACAACGGGGTCTTCCTGGAGGGCTCCCTCTTGAAGCCCTCCATGACC
CTCCCCGGCGCGGACTGCGGCGAGTCTGTCACCCCCGAGAAGATCGCTGA
GTACACCGTCCGCACCCTGGAACGCCACGTCCCTTCCTCCGTTCCCGGTG
TCATGTTCCTCTCGGGCGGGATGTCCGAGGAGGAGGCTTCCATCAACCTG
AACGCCCTCAACAAGCGCGAGCGCAAGGGCCCCTGGTCCCTCTCCTTCTC
CTACGGACGCGCCCTCCAACAATCCTGCCTCAAGGCGTGGATGGGCAAGG
CCGAGAACGTCCCCGCGGCACGCACAGCCCTCATGGCCCGCGCGCAGGCC
AACAGCGAGGCCAACTTGGGCAAGTACGTGGCGGGCTCCCAGCCGTCCGC
GGACGAGACCCTCTTCGTGAAGGGATACAAGTACTAAGCAAGGGTATCCT
GGCCGTGGACGAGTCCACCAAGACCATTGGCAAGCGCTTGCAGTCCATCG
GGGTTGAGAACACAGAGGCCAACCGTCAGGCTTACCGAGGCCTCCTCTTC
ACCACCCCCAAGCTCGGCGACTTTATCTCTGGGGCCATCCTGTACGAGGA
GACCCTCTTCCAGATGTGTTATGATGCACGTATTTCTCACGTTTCCCCTG
GTTTCACCGTTCCTGCACATGGTTACAGTCACACTCCCATAATCCTTCAG
ATGGCTCGCCTTTTTGTCACCGTTGCCGCCCTGGTGGCCGCCTGTGCCAC
GGTAAACGCGTTCCAAGTGCCGCGCATGTCCTTGGACAAGTACAGGAGCG
AGCTTGCTGAGACCGCCAAGAAGATTGCTTCCCCCGAACAACGTGGACGG
CACCCCCTTCGTCAAGAACCTGGCCTCCGTGGGCGTGATCCCAGGCATCA
AGGTGGACATGGGCCTCTCCCCCCTCCCCGGCGGGCACCCCGTCGAGACC
TGGTGCACAGGCCTGGACGGCCTGGTGGAGCGCGCCCAGAAATACTACGC
CCAAGGCGCCCGTTTCGCCAAGTGGCGCGCGGTGTTGCAGATCACGTCGG
ACGGGGCTCCCTCTGAGCTTTCCATCCAGGAGAACGCCTGGGGCCTGGCT
CGGTACGCCCGGGCCGTGCAGGAGGGTGGCCTGGTGCCCATCGTGGAGCC
TGAGATTTTGATGGACGGCGACCACAACATCGACACCACGGCCCGCGTCC
AGGAGCGTGTGCTGGCCGCGGTCTACAAGGCCTTGTCGGACAACGGGGTC
TTCCTGGAGGGCTCCCTCTTGAAGCCCTCCATGACCCTCCCCGGCGCGGA
CTGCGGCGAGTCTGTCACCCCCGAGAAGATCGCTGAGTACACCGTCCGCA
CCCTGGAACGCCACGTCCCTTCCTCCGTTCCCGGTGTCATGTTCCTCTCG
GGCGGGATGTCCGAGGAGGAGGCTTCCATCAACCTGAACGCCCTCAACAA
GCGCGAGCGCAAGGGCCCCTGGTCCCTCTCCTTCTCCTACGGACGCGCCC
TCCAACAATCCTGCCTCAAGGCGTGGATGGGCAAGGCCGAGAACGTCCCC
GCGGCACGCACAGCCCTCATGGCCCGCGCGCAGGCCAACAGCGAGGCCAA
CTTGGGCAAGTACGTGGCGGGCTCCCAGCCGTCCGCGGACGAGACCCTCT
TCGTGAAGGGATACAAGTACTAAGCAAGGGTATCCTGGCCGTGGACGAGT
CCACCAAGACCATTGGCAAGCGCTTGCAGTCCATCGGGGTTGAGAACACA
GAGGCCAACCGTCAGGCTTACCGAGGCCTCCTCTTCACCACCCCCAAGCT
CGGCGACTTTATCTCTGGGGCCATCCTGTACGAGGAGACCCTCTTCCAGA
TGTGTTATGATGCACGTATTTCTCACGTTTCCCCTGGTTTCACCGTTCCT
GCACATGGTTACAGTCACACTCCCATAATCCTTCAGATGGCTCGCCTTTT
TGTCACCGTTGCCGCCCTGGTGGCCGCCTGTGCCACGGTAAACGCGTTCC
AAGTGCCGCGCATGTCCTTGGACAAGTACAGGAGCGAGCTTGCTGAGACC
GCCAAGAAGATTGCTTCCCCCGAACAACGTGGACGGCACCCCCTTCGTCA
AGAACCTGGCCTCCGTGGGCGTGATCCCAGGCATCAAGGTGGACATGGGC
CTCTCCCCCCTCCCCGGCGGGCACCCCGTCGAGACCTGGTGCACAGGCCT
GGACGGCCTGGTGGAGCGCGCCCAGAAATACTACGCCCAAGGCGCCCGTT
TCGCCAAGTGGCGCGCGGTGTTGCAGATCACGTCGGACGGGGCTCCCTCT
GAGCTTTCCATCCAGGAGAACGCCTGGGGCCTGGCTCGGTACGCCCGGGC
CGTGCAGGAGGGTGGCCTGGTGCCCATCGTGGAGCCTGAGATTTTGATGG
ACGGCGACCACAACATCGACACCACGGCCCGCGTCCAGGAGCGTGTGCTG
GCCGCGGTCTACAAGGCCTTGTCGGACAACGGGGTCTTCCTGGAGGGCTC
CCTCTTGAAGCCCTCCATGACCCTCCCCGGCGCGGACTGCGGCGAGTCTG
TCACCCCCGAGAAGATCGCTGAGTACACCGTCCGCACCCTGGAACGCCAC
GTCCCTTCCTCCGTTCCCGGTGTCATGTTCCTCTCGGGCGGGATGTCCGA
GGAGGAGGCTTCCATCAACCTGAACGCCCTCAACAAGCGCGAGCGCAAGG
GCCCCTGGTCCCTCTCCTTCTCCTACGGACGCGCCCTCCAACAATCCTGC
CTCAAGGCGTGGATGGGCAAGGCCGAGAACGTCCCCGCGGCACGCACAGC
CCTCATGGCCCGCGCGCAGGCCAACAGCGAGGCCAACTTGGGCAAGTACG
TGGCGGGCTCCCAGCCGTCCGCGGACGAGACCCTCTTCGTGAAGGGATAC
AAGTACTAAGCAAGGGTATCCTGGCCGTGGACGAGTCCACCAAGACCATT
GGCAAGCGCTTGCAGTCCATCGGGGTTGAGAACACAGAGGCCAACCGTCA
GGCTTACCGAGGCCTCCTCTTCACCACCCCCAAGCTCGGCGACTTTATCT
CTGGGGCCATCCTGTACGAGGAGACCCTCTTCCAGATGTGTTATGATGCA
CGTATTTCTCACGTTTCCCCTGGTTTCACCGTTCCTGCACATGGTTACAG
TCACACTCCCATAATCCTTCAGATGGCTCGCCTTTTTGTCACCGTTGCCG
CCCTGGTGGCCGCCTGTGCCACGGTAAACGCGTTCCAAGTGCCGCGCATG
TCCTTGGACAAGTACAGGAGCGAGCTTGCTGAGACCGCCAAGAAGATTGC
TTCCCCCG

Synonyms

Publications