rna4966, rna4966 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4966
Unique Name	rna4966
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1787
Alignment location	CM002464.1:788849..789499 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100154g6.6617.mrna
Orig protein id	gnl\|cribi\|Naga_100154g6.6617
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:788849..789499 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100154g6	gene4794	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4966	rna4966-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25719.1	cds4954	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:788849..789499-
coding sequence from alignment at CM002464.1:788849..789499-

mRNA sequence

>rna4966 ID=rna4966|Name=rna4966|organism=Nannochloropsis gaditana|type=mRNA|length=1787bp
GTACTCAATCACGAGTGGACTGCGTGTCCCAGACCATGACCTAGCGTATC
GTCCTCATACCCACCCCACACTTTCCACAAACGTAGGCAGTTGAAGTGTC
TTTAACGAACACGAGGGGTGGGAGCCCCTCTACCGTGGCGACCATGCGAT
GTCGCAGGAAGGCGTCTCTGATGTCCTTGCCGCTGATCTTAGCTGCGATA
GCTACTGTTGCGTCGACAGTCTTGCCATCCTCTGCGCCCGTGTCCCGCTC
TCATTCCTTTCCGCTCCCGGTGGCTTGGATAAAGCATGCCCAGCAACATT
CCTCCGTCCTCCCAGCCCCGCCCCCTCCTAGCTCCTGCATGTCCGCGTCG
ACTTCAACCTCGACCACAATGATGCATTCCTGGCCTAGGATGCTCTCACG
GCGGCGTTTTCTGCCCGCGTACGGCGCCAGTGGGCGTGGTAGACGAGGGC
AACCTTATGGCGGCCGCGGGGGAAGGGGGGGCAGAGGCGGACTCTCAGGG
AGGGGGGAAGGCGGGATCGACCTGTCGAACTGGACAAATCGACTTCTTGC
TTTGAATGTGGCGATTTTCATCGCGCAGCAAGTGGATCCTAGCATCACCT
TGATGGGCGCTAAGAACGACCAGCTCATCCGCCGGGGAGAGCTCTACCGC
CTTTTCACCCCCATGCTCCTCCACGGAGACATCCAACACTTGATGGCGAA
CTCCTACACTATGTACAATCTGGGGCATTTCATAGAACCCCTCTTTGGTG
GGCCCATGCAGTACTTGGCCCTGTACATCCTCTCCGGCTTGGCGGGCAAT
GCCCTCTCCTTCGTCTCCGGGCGGGCCCCCGTTTCCATAGGAGCCTCGAC
GGCCGTCTCGGGCCTTTTGGGCGCCGTCGGGCTCTTTTGCTACCGGCACC
GGCACGTTTGGAATTTGGAGGGGCCTTTGCGCTCTGTCGCCCAGGCGGTG
GTCATCAACGGGGTCTTGGGGATGAGCAGCGCCCGGATTGACAACTTTGG
GCATCTGGGTGGTTTGGTGGGGGGGGCGGTCTGTGGCTGGCTCTTCGGTC
CCCGGCTCGTCCCTTTGACGACCCGGGAGGGCGTATTCAGGGGCTACGTG
AACAGTCCGATCCTGCAGACTGGCTGGGCAGCCCTGGGGAGACAAGTCCG
GGGTCGGCTTGGGAGGCGCTCCGGGTTGGGGGCACCGCCTGGGAAAGGGG
GAGCCCGGCAGGGATGGGCGCGGAGGGATGGAGGGAAGGAGGAGCAGCGG
CCGCCTTCCTGTGGTAAGAAAGCAGCCTGGTGGGCGCAACTGGGGAAATT
TTTGCACCGGGGAGGGGAAGACGGAGGAGGGGGAGGCACGGGGAGGCTGG
CCTTCGTCGAGACGCCAGGGGGGGCCTGGGGAGGGAGGGAGAAGGGGAGA
AGGAGCCAAGGTCCAGGTCGGTGGGTTCGACGTGGGGGCATGCGGGGTGC
AGGGGGGCCGTTCACGACGGGATTGGCCGTGGAGGTGATGGTGGGCACGA
GGACCGGGAGGGCAACGTTGGGTCCGTGGGGTGCCTGAAGAGGCCGCCGG
GCGAGGGCATGCCACCGTCAAAGAAACTATGAGCATACTCGTGATGAAAC
GTGTTCTATGCACGTTGTTGGGTGGAAAGGGGGGGGCGGAGGGTTTGGGG
GCCGGGTTGGCCTCTTGGCTCTTTTTTTTCCGATGCACGCGATCTGTTTG
GAAGCCGGGCAGTCCCACAGGAAGGACGGCTGCGGTCCGTCTGCATGGCA
ATCCTCCTGTGCAAGGCTTACCTCAACCGTCATGGCG

protein sequence of rna4966

>rna4966-protein ID=rna4966-protein|Name=rna4966|organism=Nannochloropsis gaditana|type=polypeptide|length=180bp
MGSVASYGSVERRSLQLITWGRRWMWREGGRSGGPRALWSGRQACDGEMG
RERGCRDPPLPTVGEASQRTSRAGVSGCHLERVESRASIARRTGLSSPSL
CDQNGDEEKVPVTIGLWRDVGRGVRGLWRRSCVCVVMNVIYVSEVPWAGE
ARGRGANRRGRPGMCLEAAVVEKELSSTSL

mRNA from alignment at CM002464.1:788849..789499-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4966 ID=rna4966|Name=rna4966|organism=Nannochloropsis gaditana|type=mRNA|length=651bp|location=Sequence derived from alignment at CM002464.1:788849..789499- (Nannochloropsis gaditana)
ATGGGCAGGTGGGGAGCGGAAGGAAGGGACCGGCGGGAGGGGAGGGCTGG
ACAGCGTGGCGTCTTATGGTTCCGTGGAGAGGAGAAGCCTCCAGCTGATT
ACATGGGGCAGACGATGGATGTGGAGGGAGGGGGGGAGGTCGGGTGGGCC
ACGGGCCTTATGGAGTGGAAGGCAGGCTTGCGACGGAGAAATGGGGAGAG
AGAGGGGATGCCGTGACCCTCCACTGCCCACGGTCGGGGAAGCGAGTCAG
AGAACATCTAGGGCGGGGTAGCACTAGTGTGGGAGAATGGCTCGTGACAT
TTCCAGAAGCTTCCTGGGGCCCGCTTTAGAGTGAGTGGATGTCATCTTGA
GAGGGTGGAGTCCAGAGCCTCGATCGCACGTCGAACCGGATTGTCTAGCC
CCTCTCTGTGCGACCAGAACGGAGACGAGGAAAAAGTGCCCGTAACAATT
GGACTCTGGCGAGATGTCGGTCGGGGCGTGCGGGGGCTATGGCGTCGGTC
GTGCGTATGTGTGGTTATGAATGTGATCTATGTGAGTGAGGTACCGTGGG
CAGGGGAGGCGAGAGGAAGAGGGGCCAACCGGCGTGGAAGGCCCGGGATG
TGTTTGGAGGCTGCGGTCGTCGAGAAGGAACTATCGTCCACTTCCCTTTA
A

Coding sequence (CDS) from alignment at CM002464.1:788849..789499-

>rna4966 ID=rna4966|Name=rna4966|organism=Nannochloropsis gaditana|type=CDS|length=1629bp|location=Sequence derived from alignment at CM002464.1:788849..789499- (Nannochloropsis gaditana)
AGTGAGTGGATGTCATCTTGAGAGGGTGGAGTCCAGAGCCTCGATCGCAC
GTCGAACCGGATTGTCTAGCCCCTCTCTGTGCGACCAGAACGGAGACGAG
GAAAAAGTGCCCGTAACAATTGGACTCTGGCGAGATGTCGGTCGGGGCGT
GCGGGGGCTATGGCGTCGGTCGTGCGTATGTGTGGTTATGAATGTGATCT
ATGTGAGTGAGGTACCGTGGGCAGGGGAGGCGAGAGGAAGAGGGGCCAAC
CGGCGTGGAAGGCCCGGGATGTGTTTGGAGGCTGCGGTCGTCGAGAAGGA
ACTATCGTCCACTTCCCTTTAACGTGGCGTCTTATGGTTCCGTGGAGAGG
AGAAGCCTCCAGCTGATTACATGGGGCAGACGATGGATGTGGAGGGAGGG
GGGGAGGTCGGGTGGGCCACGGGCCTTATGGAGTGGAAGGCAGGCTTGCG
ACGGAGAAATGGGGAGAGAGAGGGGATGCCGTGACCCTCCACTGCCCACG
GTCGGGGAAGCGAGTCAGAGAACATCTAGGGCGGGATGGGCAGAGTGAGT
GGATGTCATCTTGAGAGGGTGGAGTCCAGAGCCTCGATCGCACGTCGAAC
CGGATTGTCTAGCCCCTCTCTGTGCGACCAGAACGGAGACGAGGAAAAAG
TGCCCGTAACAATTGGACTCTGGCGAGATGTCGGTCGGGGCGTGCGGGGG
CTATGGCGTCGGTCGTGCGTATGTGTGGTTATGAATGTGATCTATGTGAG
TGAGGTACCGTGGGCAGGGGAGGCGAGAGGAAGAGGGGCCAACCGGCGTG
GAAGGCCCGGGATGTGTTTGGAGGCTGCGGTCGTCGAGAAGGAACTATCG
TCCACTTCCCTTTAACGTGGCGTCTTATGGTTCCGTGGAGAGGAGAAGCC
TCCAGCTGATTACATGGGGCAGACGATGGATGTGGAGGGAGGGGGGGAGG
TCGGGTGGGCCACGGGCCTTATGGAGTGGAAGGCAGGCTTGCGACGGAGA
AATGGGGAGAGAGAGGGGATGCCGTGACCCTCCACTGCCCACGGTCGGGG
AAGCGAGTCAGAGAACATCTAGGGCGGGATGGGCAGAGTGAGTGGATGTC
ATCTTGAGAGGGTGGAGTCCAGAGCCTCGATCGCACGTCGAACCGGATTG
TCTAGCCCCTCTCTGTGCGACCAGAACGGAGACGAGGAAAAAGTGCCCGT
AACAATTGGACTCTGGCGAGATGTCGGTCGGGGCGTGCGGGGGCTATGGC
GTCGGTCGTGCGTATGTGTGGTTATGAATGTGATCTATGTGAGTGAGGTA
CCGTGGGCAGGGGAGGCGAGAGGAAGAGGGGCCAACCGGCGTGGAAGGCC
CGGGATGTGTTTGGAGGCTGCGGTCGTCGAGAAGGAACTATCGTCCACTT
CCCTTTAACGTGGCGTCTTATGGTTCCGTGGAGAGGAGAAGCCTCCAGCT
GATTACATGGGGCAGACGATGGATGTGGAGGGAGGGGGGGAGGTCGGGTG
GGCCACGGGCCTTATGGAGTGGAAGGCAGGCTTGCGACGGAGAAATGGGG
AGAGAGAGGGGATGCCGTGACCCTCCACTGCCCACGGTCGGGGAAGCGAG
TCAGAGAACATCTAGGGCGGGATGGGCAG

Synonyms

Publications