rna4912, rna4912 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4912
Unique Name	rna4912
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3153
Alignment location	CM002464.1:650715..652253 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100176g1.1042.mrna
Orig protein id	gnl\|cribi\|Naga_100176g1.1042
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:650715..652253 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100176g1	gene4743	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25773.1	cds4900	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4912	rna4912-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:650715..652253-
coding sequence from alignment at CM002464.1:650715..652253-

mRNA sequence

>rna4912 ID=rna4912|Name=rna4912|organism=Nannochloropsis gaditana|type=mRNA|length=3153bp
GAAACGCAAGAAGGTATAGCAAGGAAGGGATTAGAAAGGGAGGTGATAAG
CCCGGTGTCACAAAACCAGCTGGACATGATCGCCCGCCGCTTGGTCCATC
TCTTTAAACGACTTCAGAGAAAGTCTGATGTTCAGGACAGTTTCCGCTTC
CTGCTAGATCAATTACGCATGGCTGTTGAAAAAGGGACACTGCACTCGGA
GCGCTTAGAGCAGCAAATGGAGGAATCTGAGCCAGGAAAAGCCCTCCTTT
CGGAGACTGGTCAAGCCAAACACCATGCCATTCGTGTGATTGAAAGCTGG
ACTGAAACATCTCTAGATCCATTGTTTGCCCAATTGAACGCCTTGAAGGA
TCAGATTCAGAATGACAGCGAGACACGAGCAGAATTGCGCGACCTAAGGA
ATTTCCTTGAAAGGAATTTGCAGAGTGGAAAAATAGACGATGAGGATGCT
GTGGTGCAGGAGACCAAGGGGCACGTTGACATGATGCGCAGGAGATTGCT
TGCGAAATATAACGAGCGGGTTTGTCGTTTGGTGGAGGAACTTTCTTATA
TCCGGGATACCTTGAAAGAAAACGAGACGGCGGAGATACTGCAGCACGAC
ATTCAGCACCTAGCCCGCAGCATAGTCTACGACTCTCAAGGGCAGCCTAC
TATCAGCAGCGACTTGGTCAATGACCTCGAGGTCTTGTTCGGTACACTTC
TACGCAAGGTGCAATTTATTCCTGTGCCTCATATTGCTGTCGTCACCAAC
GATTTCGATTTTGCATGCGATGACATTGTCCTTAATTTGCGAGAAGTGAC
TCCAAAGCAGATTCAGTTGGAGAGTCTGACGAACATTCACAACCTGGAAT
CTGAACAAAGCGAGTCCAGTGCCATCAGAGGGGTTTCAGCTGCTGCTGAG
GGAGCACCAGAGCCTGTAGGACTTGAAACATTTGAGCGGATCTATCTACG
GGAAATTCATGCTGACCTACCAGGCATCTCGTGGTATTTCAACAAAAAAG
GGGGTATGATTCATGATCATGATCGTGGCAAGGCGGATATCAAGATATAT
GGCAAAGGCATGAGCGTAGATCTGGATGTTCAACCAGGCTTGCCCATAGC
AACGGAAGATCGCCCGGTCGCGCACACACTGGAAGTCAAGCAGTGCAAGG
CAACCATCCACCGCATGTCGCTTCGATTATATGATGCCAGACATGATTGG
CTCTACACCGTTTTTCATTCTTACATCAAAGGACAAGTGCGTCGCGCGAT
TGAGTCCTCGGTGGGGAGATACTTAAAGGCATATGTAACAAATATTGACA
GGAATGCAACGATCGCCGCAGTAGGTCACTACCCAGCTACTCGCCACATC
ATGGTATCCAGCCAACAGGAACAGAAGGAGCATCAAGAGCACTATCGAGG
TCATGAAAAAGAGCAGTTAGGAGCAACGATACCATTAAGGTCGGCTCGTA
CCGTTCGCTCTACCAGTGTGGGTGAGGATGACGTGCCACAAATTCATCGA
CTTGTTGAAGAGGACGGATTCAAAAGGTAAGGCGGTCGCTTGTCCCCCTT
CGAGGAGGGTCCTGCATAAGAGTAGACGCAAAACTCTGGACAACACATAT
GCAATTCAATTGCGGGAAGTGTAAAAATGTAAAACGATTGATGTAGACAC
TTGGGCTTGTCTTTCGACGGATGAGAGCATGATCAGTATCCTCGTTCTAC
TACGTCATATTTGAAGATTTCCATCAAAGTAGAAGACGCGAGCGAGCGTA
GTAGGTCTTGTTAAGATCATATTTATATCGATTGAATGATCACTTGGTTG
AAGCAATCTGGTTTCACACATGATCATTCTAAATCTCAGCAGGCACGAGC
AAGACATGAAGCGCAAACATTTGGATTTTGTGTTTAGGCGAATACCCGCG
TATAATAGCGTCGCAGACGTACTGCTTACTGCAAACTTGCTTTTATTTTA
CTGTGGCGGCCTTACCATCAAATAAATTTGTCCACGAAATTGTGCATTCA
CGACTAGCGCGTCAAAGTAGGCTTGGATGCTATGTGAGGCTCCAGAAATC
GCTGCGGACAGTGCTATTCTTGATTTGCTTGCTGATGTTGTTGCCGACTT
TGCTGTTGCAACCATGACTGTTGCTGCACCATCATGACGCTCTGCTGAAG
CTGCTGTGGTTGGTTTTGTTGAGACGATTGCTGCCAAATTCGTTGTTGCT
GTGGCCGAGGCAGAACTTGCGGCACAAGCTGCTTTTCAAAAGTCGAGGCC
ATTTCCATTGATGTCAGATCCCTATCAGATGGCGATGAGAACACAAGGGG
CTCATTCGATACAGAAATCATCGATCTCGATTGGCCTTGTAGTGATTCTT
GAGAGACAGGGTACGACGGACTTTGTACATCGTTCTGCTCTTGTTGGTGG
CGTCCCTGGGGGACCAAATGTTGTTGCTGTAGTGATGACTGCTGCTGCTG
CTGATGATGATGTTGTTGTTGTTGTTGACGATTTTGTTGTTGTTGTTGCT
GCTGCTGTTGTTGCTGCTGCTGCTGTTGTTTTTGCTGCTGCTGCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTGTGGTTGTGGTTGATGTTG
GTGTAGATGATGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTGGTTGTGGTTGTGGTTGATGTTGGTGTAGATGATGTTGT
TGTTGTTGTTGTTGTTGTTGTTCTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTGGTTGTGGTTGTGGTTGATGTTGGT
GTAGATGTTGTTGTTGTTGTTGTTGACGATTTTGTTGTTGTTGTTGCTGC
TGCTGTTGTTGTTGCTGCTGCTGCTGTTGTTTTTGCTGATGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTG

protein sequence of rna4912

>rna4912-protein ID=rna4912-protein|Name=rna4912|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
HTHTHTHTHTHTHTHTHTHTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQKQQ
QQQQQQQQQQQQQQNRQQQQQQHLHQHQPQPQPQQQQQQQQQQQQQQQQQ
EQQQQQQQQHHLHQHQPQPQPQQQQQQQQQQQQQQQQHHLHQHQPQPQPQ
QQQQQQQQQQQQQQKQQQQQQQQQQQQQQQNRQQQQQHHHQQQQQSSLQQ
QHLVPQGRHQQEQNDVQSPSYPVSQESLQGQSRSMISVSNEPLVFSSPSD
RDLTSMEMASTFEKQLVPQVLPRPQQQRIWQQSSQQNQPQQLQQSVMMVQ
QQSWLQQQSRQQHQQANQE

mRNA from alignment at CM002464.1:650715..652253-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4912 ID=rna4912|Name=rna4912|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp|location=Sequence derived from alignment at CM002464.1:650715..652253- (Nannochloropsis gaditana)
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACATCAGCAAAAACAACAG
CAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAAAATCGTCA
ACAACAACAACAACAACATCTACACCAACATCAACCACAACCACAACCAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
GAACAACAACAACAACAACAACAACAACATCATCTACACCAACATCAACC
ACAACCACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCATCTACACCAACATCAACCACAACCACAACCACAA
CAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAAAAACAACA
GCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAACAAAATCGTCAAC
AACAACAACAACATCATCATCAGCAGCAGCAGCAGTCATCACTACAGCAA
CAACATTTGGTCCCCCAGGGACGCCACCAACAAGAGCAGAACGATGTACA
AAGTCCGTCGTACCCTGTCTCTCAAGAATCACTACAAGGCCAATCGAGAT
CGATGATTTCTGTATCGAATGAGCCCCTTGTGTTCTCATCGCCATCTGAT
AGGGATCTGACATCAATGGAAATGGCCTCGACTTTTGAAAAGCAGCTTGT
GCCGCAAGTTCTGCCTCGGCCACAGCAACAACGAATTTGGCAGCAATCGT
CTCAACAAAACCAACCACAGCAGCTTCAGCAGAGCGTCATGATGGTGCAG
CAACAGTCATGGTTGCAACAGCAAAGTCGGCAACAACATCAGCAAGCAAA
TCAAGAATAGCACTGTCCGCAGCGATTTCTGGAGCCTCACATAGCATCCA
AGCCTACTTTGACGCGCTAGTCGTGAATGCACAATTTCGTGGACAAATTT
ATTTGATGGTAAGGCCGCCACCTGCGGATAAGCACACACACTGATAAGAT
TTTAATTTAATTGGATAGTATACTTTGATACATGTGGAACGTGACATACG
CCTAGGAGGCTTTCAGTGTACAGCAACTTACAGTAAAATAAAAGCAAGTT
TGCAGTAAGCAGTACGTCTGCGACGCTATTATACGCGGGTATTCGCCTAA
ACACAAAATCCAAATGTTTGCGCTTCATGTCTTGCTCGTGCCTGCTGAGA
TTTAGAATGATCATGTGTGAAACCAGATTGCTTCAACCAAGTGATCATTC
AATCGATATAAATATGATCTTAACAAGACCTACTACGCT

Coding sequence (CDS) from alignment at CM002464.1:650715..652253-

>rna4912 ID=rna4912|Name=rna4912|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002464.1:650715..652253- (Nannochloropsis gaditana)
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAACAACATCAGCAAAAACAACAG
CAGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAAAATCGTCA
ACAACAACAACAACAACATCTACACCAACATCAACCACAACCACAACCAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
GAACAACAACAACAACAACAACAACAACATCATCTACACCAACATCAACC
ACAACCACAACCACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACATCATCTACACCAACATCAACCACAACCACAACCACAA
CAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAAAAACAACA
GCAGCAGCAGCAACAACAGCAGCAGCAACAACAACAACAAAATCGTCAAC
AACAACAACAACATCATCATCAGCAGCAGCAGCAGTCATCACTACAGCAA
CAACATTTGGTCCCCCAGGGACGCCACCAACAAGAGCAGAACGATGTACA
AAGTCCGTCGTACCCTGTCTCTCAAGAATCACTACAAGGCCAATCGAGAT
CGATGATTTCTGTATCGAATGAGCCCCTTGTGTTCTCATCGCCATCTGAT
AGGGATCTGACATCAATGGAAATGGCCTCGACTTTTGAAAAGCAGCTTGT
GCCGCAAGTTCTGCCTCGGCCACAGCAACAACGAATTTGGCAGCAATCGT
CTCAACAAAACCAACCACAGCAGCTTCAGCAGAGCGTCATGATGGTGCAG
CAACAGTCATGGTTGCAACAGCAAAGTCGGCAACAACATCAGCAAGCAAA
TCAAGAATAG

Synonyms

Publications