rna4905, rna4905 (mRNA) Nannochloropsis gaditana

Overview
Namerna4905
Unique Namerna4905
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1196
Alignment locationCM002464.1:633104..634770 +

Link to JBrowse

Properties
Property NameValue
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100176g8.1053.mrna
Orig protein idgnl|cribi|Naga_100176g8.1053
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:633104..634770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100176g8gene4737Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4905rna4905-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25784.1cds4893Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4905 ID=rna4905|Name=rna4905|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp
ACCCCTGTCAGGCCTGGGCAAGAATGTTTGTGACCGCACGAGCCTAGGCA
TAATTTGCTCCTCTTATTTCCCGCACATGTGTGCTGCAAGTCTCCTCGAT
CGCAAGAGGCCAGGCTCACGGGCCCCCCCTTACGACCCTGCCTGCGTGCG
GTCAGGTCATCTCAGTCTACTGCAAGGCAAATCTCACAGGCGGCACCAAA
CATGTTTCTTCCTCAAACCTCATACAGATGACTCTGCGACGCTTTCTGCA
AGGTGGTGCACTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAAAGAGCCG
CGATGTCTCCTGTGCTTGCCATGAGATCTGTGTCTTCGACGTCTGCAATT
CGTGCGCCTTCGGAGGGAAATGAAGTGCCGGCGGCCACGAAGAGTGAGGA
GCAAGAGGGCAGGGAGGCAGCAGGCACCCCATGGACGCCCGCCCCGGTGG
CAGAAGACTACGAGGAGACCATTCAGATCTTACTGAACAGTCACAAGGTG
GAGGACGCACTTGACATATTCGGGCGCATGATCAAGCGCGGTTTCCGGCC
GAGCTCTGCGATCACTGACGACCTCTACGAGGCGGCCAAAACCAAGCCCG
AGTGGCAGGCAGCAGCAGTGAAAGCTCTCCAAGGGTTACCTTAAATCGAT
GCTTCTGGTCTATTCGTCTGAAGAGGAAGAGGAGGGTGAGAAGGGATCTC
CCTGTGCTGCGCATGTCTGGTGTGCTGTGCCAGCAGGATGGATTCCTCTG
GGCGAGCGTGTTGTAGCGGAAACGGACGCGTACTGATACAATTGAGGCAG
GCCAGAGCCAAGATATGGGCTTGAGTAAGTGAGCCACGTCAGGTATGCCT
CGGCCGCGGCTCTTGGAATGGACTCACTGGAAGCAGCAGGTAGGTGTCCG
GAGGGTTATGTGTGAGATGGGACCACGAAAAGAAGGGCGTGATTATAACT
TCTCGCATTAACACAATCTGTCTTCCGGACGGAAGTGTAGTGTATGCGAC
CTATTTAATCTTTGAGAGATGACCCTGTATCGATCGTCCAGTCAATTGTT
GGCGATGCCTTCGTGTACTTCTGTGGCTTCCTCATTCTTTTTCCTTTCCC
ATCGGAAGGGATTTCCTGCAGCGTGCCAACTACATGACGAATAGGCATCA
CGCGTGCTTCGAAAGAAAATAAAGAAGGTCAAGGAGCAAGCTATCG
back to top

protein sequence of rna4905

>rna4905-protein ID=rna4905-protein|Name=rna4905|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MTLRRFLQGGALAAAGAKLGWQRAAMSPVLAMRSVSSTSAIRAPSEGNEV
PAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGR
MIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP
back to top

mRNA from alignment at CM002464.1:633104..634770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4905 ID=rna4905|Name=rna4905|organism=Nannochloropsis gaditana|type=mRNA|length=1667bp|location=Sequence derived from alignment at CM002464.1:633104..634770+ (Nannochloropsis gaditana)
ACCCCTGTCAGGCCTGGGCAAGAATGTTTGTGACCGCACGAGCCTAGGCA
TAATTTGCTCCTCTTATTTCCCGCACATGTGTGCTGCAAGTCTCCTCGAT
CGCAAGAGGCCAGGCTCACGGGCCCCCCCTTACGACCCTGCCTGCGTGCG
GTCAGGTCATCTCAGTCTACTGCAAGGCAAATCTCACAGGCGGCACCAAA
CATGTTTCTTCCTCAAACCTCATACAGATGACTCTGCGACGCTTTCTGCA
AGGTGGTGCACTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAAAGAGCCG
CGATGTCTCCTGTGCTTGCCATGGTACGTATCGAGATGTAGATGGAGCCT
TCACGCAATCAACCGATGGGTAACGCCGTTCTCACACTTCGATGCTCTTG
ACTATCAACAGAGATCTGTGTCTTCGACGTCTGCAATTCGTGCGCCTTCG
GAGGGAAATGAAGTGCCGGCGGCCACGAAGAgtgaggagcaagagggcag
ggaggcagcaggTAAGATAAGACACGGCGGCCTGTGTCGGCAAAATCCTC
GGCAAGAATGTCGCATGCGCACAATACAGGGCGAGTAGCTAGCTAGCGGA
ACTATGGCGCCAATGCCTGTCTTTCAACTTCCATGCTCCCCGCATGCCAT
CATGATCCCATACCATCTTTGTGCAGGCACCCCATGGACGCCCGCCCCGG
TGGCAGAAGACTACGAGGAGACCATTCAGATCTTACTGAACAGTCACAAG
GTAAAGCACACAAATAAGAAGGATCTATCATGCGTACACAAATGTGACTT
GATTCACCTTTGCTGCCAACTTATcacaggtggaggacgcACTTGACATA
TTCGGGCGCATGATCAAGCGCGGTTTCCGGCCGAGCTCTGCGGTACGAGC
ATTCTCATTCTTGTCGATTCGTGTCCGGATAGAACTTGTTGGACCACGAT
GTATCGCAGTCAATAACTTTGCCCCTGGTCGCTTGTTTTCTGAAccgtcc
ccctttctccgcccacCCTGCCCCGTCGTAGATCACTGACGACCTCTACG
AGGCGGCCAAAACCAAGCCCGAGTGGcaggcagcagcagtgaAAGCTCTC
CAAGGGTTACCTTAAATCGATGCTTCTGGTCTATTCGtctgaagaggaag
aggagggtgagaagggaTCTCCCTGTGCTGCGCATGTCTGGTGTGCTGTG
CCAGCAGGATGGATTCCTCTGGGCGAGCGTGTTGTAGCGGAAACGGACGC
GTACTGATACAATTGAGGCAGGCCAGAGCCAAGATATGGGCTTGAGTAAG
TGAGCCACGTCAGGTATGCCTCGGCCGCGGCTCTTGGAATGGACTCACTG
GAAGCAGCAGGTAGGTGTCCGGAGGGTTATGTGTGAGATGGGACCACGAA
AAGAAGGGCGTGATTATAACTTCTCGCATTAACACAATCTGTCTTCCGGA
CGGAAGTGTAGTGTATGCGACCTATTTAATCTTTGAGAGATGACCCTGTA
TCGATCGTCCAGTCAATTGTTGGCGATGCCTTCGTGTACTTCTGTGGCTT
CCtcattctttttcctttcccatcgGAAGGGATTTCCTGCAGCGTGCCAA
CTACATGACGAATAGGCATCACGCGTGCTTCGAAAGAAAATAAAGAAGGT
CAAGGAGCAAGCTATCG
back to top

Coding sequence (CDS) from alignment at CM002464.1:633104..634770+

>rna4905 ID=rna4905|Name=rna4905|organism=Nannochloropsis gaditana|type=CDS|length=2085bp|location=Sequence derived from alignment at CM002464.1:633104..634770+ (Nannochloropsis gaditana)
ATGACTCTGCGACGCTTTCTGCAAGGTGGTGCACTTGCGGCAGCAGGGGC
TAAGTTGGGATGGCAAAGAGCCGCGATGTCTCCTGTGCTTGCCATGAGAT
CTGTGTCTTCGACGTCTGCAATTCGTGCGCCTTCGGAGGGAAATGAAGTG
CCGGCGGCCACGAAGAgtgaggagcaagagggcagggaggcagcagGCAC
CCCATGGACGCCCGCCCCGGTGGCAGAAGACTACGAGGAGACCATTCAGA
TCTTACTGAACAGTCACAAGgtggaggacgcACTTGACATATTCGGGCGC
ATGATCAAGCGCGGTTTCCGGCCGAGCTCTGCGATCACTGACGACCTCTA
CGAGGCGGCCAAAACCAAGCCCGAGTGGcaggcagcagcagtgaAAGCTC
TCCAAGGGTTACCTTAAATGACTCTGCGACGCTTTCTGCAAGGTGGTGCA
CTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAAAGAGCCGCGATGTCTCC
TGTGCTTGCCATGAGATCTGTGTCTTCGACGTCTGCAATTCGTGCGCCTT
CGGAGGGAAATGAAGTGCCGGCGGCCACGAAGAgtgaggagcaagagggc
agggaggcagcagGCACCCCATGGACGCCCGCCCCGGTGGCAGAAGACTA
CGAGGAGACCATTCAGATCTTACTGAACAGTCACAAGgtggaggacgcAC
TTGACATATTCGGGCGCATGATCAAGCGCGGTTTCCGGCCGAGCTCTGCG
ATCACTGACGACCTCTACGAGGCGGCCAAAACCAAGCCCGAGTGGcaggc
agcagcagtgaAAGCTCTCCAAGGGTTACCTTAAATGACTCTGCGACGCT
TTCTGCAAGGTGGTGCACTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAA
AGAGCCGCGATGTCTCCTGTGCTTGCCATGAGATCTGTGTCTTCGACGTC
TGCAATTCGTGCGCCTTCGGAGGGAAATGAAGTGCCGGCGGCCACGAAGA
gtgaggagcaagagggcagggaggcagcagGCACCCCATGGACGCCCGCC
CCGGTGGCAGAAGACTACGAGGAGACCATTCAGATCTTACTGAACAGTCA
CAAGgtggaggacgcACTTGACATATTCGGGCGCATGATCAAGCGCGGTT
TCCGGCCGAGCTCTGCGATCACTGACGACCTCTACGAGGCGGCCAAAACC
AAGCCCGAGTGGcaggcagcagcagtgaAAGCTCTCCAAGGGTTACCTTA
AATGACTCTGCGACGCTTTCTGCAAGGTGGTGCACTTGCGGCAGCAGGGG
CTAAGTTGGGATGGCAAAGAGCCGCGATGTCTCCTGTGCTTGCCATGAGA
TCTGTGTCTTCGACGTCTGCAATTCGTGCGCCTTCGGAGGGAAATGAAGT
GCCGGCGGCCACGAAGAgtgaggagcaagagggcagggaggcagcagGCA
CCCCATGGACGCCCGCCCCGGTGGCAGAAGACTACGAGGAGACCATTCAG
ATCTTACTGAACAGTCACAAGgtggaggacgcACTTGACATATTCGGGCG
CATGATCAAGCGCGGTTTCCGGCCGAGCTCTGCGATCACTGACGACCTCT
ACGAGGCGGCCAAAACCAAGCCCGAGTGGcaggcagcagcagtgaAAGCT
CTCCAAGGGTTACCTTAAATGACTCTGCGACGCTTTCTGCAAGGTGGTGC
ACTTGCGGCAGCAGGGGCTAAGTTGGGATGGCAAAGAGCCGCGATGTCTC
CTGTGCTTGCCATGAGATCTGTGTCTTCGACGTCTGCAATTCGTGCGCCT
TCGGAGGGAAATGAAGTGCCGGCGGCCACGAAGAgtgaggagcaagaggg
cagggaggcagcagGCACCCCATGGACGCCCGCCCCGGTGGCAGAAGACT
ACGAGGAGACCATTCAGATCTTACTGAACAGTCACAAGgtggaggacgcA
CTTGACATATTCGGGCGCATGATCAAGCGCGGTTTCCGGCCGAGCTCTGC
GATCACTGACGACCTCTACGAGGCGGCCAAAACCAAGCCCGAGTGGcagg
cagcagcagtgaAAGCTCTCCAAGGGTTACCTTAA
back to top
Synonyms
Publications