EWM25785.1, cds4892 (CDS) Nannochloropsis gaditana

Overview
NameEWM25785.1
Unique Namecds4892
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:633331..633426 +
Alignment locationCM002464.1:633515..633614 +
Alignment locationCM002464.1:633780..633853 +
Alignment locationCM002464.1:633933..633995 +
Alignment locationCM002464.1:634135..634218 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25785.1
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100176g8.1054.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:633331..633426 +
CM002464.1supercontigCM002464.1:633515..633614 +
CM002464.1supercontigCM002464.1:633780..633853 +
CM002464.1supercontigCM002464.1:633933..633995 +
CM002464.1supercontigCM002464.1:634135..634218 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
[Close]
BLAST of EWM25785.1 vs. NCBI_GenBank
Match: gi|585107649|gb|EWM25783.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana] >gi|585107650|gb|EWM25784.1| Pentatricopeptide repeat containing protein [Nannochloropsis gaditana] >gi|585107651|gb|EWM25785.1| Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 278.485 bits (711), Expect = 6.907e-95
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0 
Query:    1 MTLRRFLQGGALAAAGAKLGWQRAAMSPVLAMRSVSSTSAIRAPSEGNEVPAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGRMIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP 138
            MTLRRFLQGGALAAAGAKLGWQRAAMSPVLAMRSVSSTSAIRAPSEGNEVPAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGRMIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP
Sbjct:    1 MTLRRFLQGGALAAAGAKLGWQRAAMSPVLAMRSVSSTSAIRAPSEGNEVPAATKSEEQEGREAAGTPWTPAPVAEDYEETIQILLNSHKVEDALDIFGRMIKRGFRPSSAITDDLYEAAKTKPEWQAAAVKALQGLP 138
The following BLAST results are available for this feature:
BLAST of EWM25785.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107649|gb|EWM25783.1|6.907e-95100.00Pentatricopeptide repeat containing protein [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4904rna4904Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications