EWM25843.1, cds4865 (CDS) Nannochloropsis gaditana

Overview
NameEWM25843.1
Unique Namecds4865
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:565630..567399 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25843.1
Productatp-dependent hsl protease atp-binding subunit hslu
Orig transcript idgnl|cribi|Naga_100021g53.8786.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:565630..567399 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0070011peptidase activity, acting on L-amino acid peptides
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0005737cytoplasm
GO:0009376HslUV protease complex
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR004491HslU
IPR003959ATPase_AAA_core
IPR019489Clp_ATPase_C
IPR003593AAA+_ATPase
Homology
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|585107710|gb|EWM25843.1| (atp-dependent hsl protease atp-binding subunit hslu [Nannochloropsis gaditana])

HSP 1 Score: 1196.8 bits (3095), Expect = 0.000e+0
Identity = 589/589 (100.00%), Postives = 589/589 (100.00%), Query Frame = 0
Query:    1 MMRSRALSFGRVAVGSRNMSYSLSRNSRSLSESSSFLLNTASHFQERTRNDLRRMLCRNIQLSSDMAAGAPALRYPFQRSERRLFEVETGGSFVPTEPPPPGGSSVGDAGTGEPGNGYAGTMSSATAAADDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            MMRSRALSFGRVAVGSRNMSYSLSRNSRSLSESSSFLLNTASHFQERTRNDLRRMLCRNIQLSSDMAAGAPALRYPFQRSERRLFEVETGGSFVPTEPPPPGGSSVGDAGTGEPGNGYAGTMSSATAAADDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL
Sbjct:    1 MMRSRALSFGRVAVGSRNMSYSLSRNSRSLSESSSFLLNTASHFQERTRNDLRRMLCRNIQLSSDMAAGAPALRYPFQRSERRLFEVETGGSFVPTEPPPPGGSSVGDAGTGEPGNGYAGTMSSATAAADDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|676385965|ref|XP_009036261.1| (hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens] >gi|323453275|gb|EGB09147.1| hypothetical protein AURANDRAFT_37329 [Aureococcus anophagefferens])

HSP 1 Score: 578.556 bits (1490), Expect = 0.000e+0
Identity = 287/447 (64.21%), Postives = 364/447 (81.43%), Query Frame = 0
Query:  146 LRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFA--ESNPNVSMADFIGKFSR-AIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            + PR +V+ LDK+IVGQ+ AKRAVAIALRNRWRR  L ++L+ EI+PKNILMIGPTGCGKTEIARR++KL+ APFIKVEATKFTEVGFHGRDVDQIIRDLVE S+ +T+K+++E  + EA++ VE ++L  LTG  A +  + +FR++LRKG L+DR IDV++PA         + GA P GG     ++NP +S+ DF+G+F+  A   K   E++++ ++EA PL+ E E++KL++  D+ +EA+ +VEESGIVFIDEIDKI N SDYRGADASAEGVQRDLLPLIEG TISTK+GN++TDYILFI+SGAFHQ KP+DLLAELQGRLPIRVEL  LTE DM+RILTEP TNLIAQQ ALL+TEN+ LEFTD A+REIARVA+L N+T+ENIGARRLHT +ERI++ ISF+A D   G ++TVDK  V G+V+DLL++SD+SKYIL
Sbjct:   54 MTPRAIVDELDKHIVGQSAAKRAVAIALRNRWRRQLLGEELKAEIVPKNILMIGPTGCGKTEIARRLSKLAQAPFIKVEATKFTEVGFHGRDVDQIIRDLVEASITLTRKKKAEQFREEARRLVEGRILDTLTGLNAAQATQSSFREMLRKGVLDDRQIDVDLPAA--------QPGAQPPGGVIQLDQNNP-ISINDFLGRFNALAQQGKGRSERKRMSIREARPLIEEQELDKLLEGVDIHKEAVAAVEESGIVFIDEIDKIVNASDYRGADASAEGVQRDLLPLIEGSTISTKYGNVDTDYILFIASGAFHQAKPSDLLAELQGRLPIRVELDALTEADMHRILTEPETNLIAQQRALLATENVMLEFTDCAIREIARVASLANRTIENIGARRLHTCIERIIDDISFNACDYKPGDLVTVDKAYVEGKVDDLLIQSDLSKYIL 491          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|675175639|ref|XP_008896704.1| (ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica INRA-310] >gi|566011761|gb|ETI34672.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P1569] >gi|567949287|gb|ETK75019.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >gi|567977948|gb|ETL28442.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >gi|568007453|gb|ETL81692.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >gi|568037311|gb|ETM34897.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica] >gi|568102443|gb|ETN17114.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica INRA-310] >gi|570315522|gb|ETO63470.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P1976] >gi|570939315|gb|ETP04572.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica CJ01A1] >gi|570969578|gb|ETP32697.1| ATP-dependent protease HslVU, ATPase subunit [Phytophthora parasitica P10297] >gi|970618738|gb|KUF66786.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora nicotianae] >gi|970649271|gb|KUF88586.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora nicotianae] >gi|970662103|gb|KUF99517.1| Bzip transcription factor [Phytophthora nicotianae])

HSP 1 Score: 566.614 bits (1459), Expect = 0.000e+0
Identity = 281/445 (63.15%), Postives = 344/445 (77.30%), Query Frame = 0
Query:  146 LRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYR-GADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            L+PRE+VE L+KYIVGQADAKRAVAIALRNRWRR K+ D+LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE ++L +LTG    E ++ TF  LLR G L DR+I+ +VP  + PGG       G G G        +SM      F RA   K+  E++++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  DYR  +D S+EGVQRDLLPLIEG  ISTKHGN+NTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTEED++RILTEPVTNLI QQ  L+ TE + L FTD+AVREIARVAA VNKTVENIGARRLHTV+E++VE+ISFD+++   G+ +T+ K  V  RV  L+ ++D+SK+IL
Sbjct:   82 LKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQVQHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVPVSKNPGGQPISFVGGEGKG--------ISME----VFGRAFGEKK-TERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDYRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIQTEGVTLNFTDDAVREIARVAAEVNKTVENIGARRLHTVVEKVVEEISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 513          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|695382857|ref|XP_009517532.1| (hypothetical protein PHYSODRAFT_469020 [Phytophthora sojae] >gi|348690443|gb|EGZ30257.1| hypothetical protein PHYSODRAFT_469020 [Phytophthora sojae])

HSP 1 Score: 564.688 bits (1454), Expect = 0.000e+0
Identity = 278/453 (61.37%), Postives = 347/453 (76.60%), Query Frame = 0
Query:  138 GSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDY-RGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            G + +   L+PRE+VE L+KY+VGQADAKRAVAIALRNRWRR K+ D+LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE ++L +LTG    E ++ TF  LL  G L DR+I+++VPA + PGG       G G G   E+            F RA   K+  E++++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  D+ R +D S+EGVQRDLLPLIEG  ISTKHGN+NTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTEED++RILTEPVTNLI QQV L+ TE + L FTD+AVREIARVAA +N+TVENIGARRLHTV+E++VE ISFD+++   G+ +T+ K  V  RV  L+ ++D+SK+IL
Sbjct:   78 GEDDIGRKLKPREVVEQLNKYVVGQADAKRAVAIALRNRWRRQKVSDELRREVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKSRKERLRKQVQHLVESRILDVLTGANVTERSRSTFERLLHAGELEDRIIEIDVPAAKNPGGQPISFVGGEGKGISIEA------------FGRAFGEKK-TERKRMTIAESRGVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQVELIKTEGVNLNFTDDAVREIARVAAEINQTVENIGARRLHTVVEKVVEDISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 517          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|1214707967|gb|OWZ19301.1| (ATP-dependent protease [Phytophthora megakarya])

HSP 1 Score: 563.148 bits (1450), Expect = 0.000e+0
Identity = 278/449 (61.92%), Postives = 345/449 (76.84%), Query Frame = 0
Query:  142 VAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYR-GADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            +   L+PRE+VE L+KYIVGQADAKRAVAIALRNRWRR K+ D+LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE ++L +LTG    E ++ TF  LL  G L DRLIDV+VPA + P G       G G G   E             F RA   K+  EK+++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  D+R  +D S+EGVQRDLLPLIEG  ISTKHGN+NTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTEED++RILTEPVTNLI QQ+ L+ TE + L+F+++A+REIARVAA +NKTVENIGARRLHTV+E++VE+ISFD+++   G+ +T+ K  V  RV  L+ ++D+SK+IL
Sbjct:   74 IGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKSRKERLRKQVQHLVESRILDVLTGANVAERSRATFERLLHAGELEDRLIDVDVPAAKNPSGQPISFVGGEGKGISMEV------------FGRAFGEKK-TEKKRMTIAESRGVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQIELIKTEGVTLDFSEDAIREIARVAAEINKTVENIGARRLHTVVEKVVEEISFDSSEMAPGSTVTITKEFVLERVGKLMKKTDLSKFIL 509          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|953496490|emb|CEG42090.1| (atp-dependent protease atpase subunit [Plasmopara halstedii])

HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 278/464 (59.91%), Postives = 345/464 (74.35%), Query Frame = 0
Query:  127 AAADDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYR-GADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            +  D+     +    +   L+PRE+VE L+KYIVGQADAKRAVAIALRNRWRR K+ D+LR EI PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE ++L +LTG    E ++ TF  LLR G L DR+I+ +VP  + P         G G G   E             F RA   KR ME++++ + E+  +  E+EME  +DM+DV REAI   EE+GIVFIDEIDKIC+  D+R  +D S+EGVQRDLLPLIEG  ISTKHGN+NTD+ILFI SGAFH  KP+DLLAELQGRLPIRVELKGLTEED++RILTEPVTNLI QQ+ L+STE + L FTD+A+REIARVA  +N+TVENIGARRLHTV+E++VE ISFD+++   G+++T+ K  V  RV  L+  +D+SK+IL
Sbjct:   63 SVVDEASTEESDQSDIGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEISPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKNRKEKMRKQVQHLVENRILDVLTGANVAERSRATFERLLRTGELEDRMIEFDVPVSKNPSAQPISIVGGEGKGIPMEV------------FGRAFGEKR-MERKRMTIAESRGVFEEMEMENAIDMTDVVREAIHESEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFIGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQIELISTEGVVLSFTDDAIREIARVANEINQTVENIGARRLHTVMEKVVEDISFDSSEMAPGSIVTITKDFVLERVGKLMKTTDLSKFIL 513          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|301118923|ref|XP_002907189.1| (ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora infestans T30-4] >gi|262105701|gb|EEY63753.1| ATP-dependent hsl protease ATP-binding subunit hslU [Phytophthora infestans T30-4])

HSP 1 Score: 557.37 bits (1435), Expect = 0.000e+0
Identity = 275/449 (61.25%), Postives = 341/449 (75.95%), Query Frame = 0
Query:  142 VAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYR-GADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            +   L+PRE+VE L+KYIVGQADAKRAVAIALRNRWRR K+ D+LR E+ PKNILMIGPTGCGKTEIARR+AKLS+APF+KVEATKFTEVGFHGRDVDQIIRDLVE ++NM KK R E ++ + Q  VE ++L +LTG    E ++ TF  LLR G L DR+I+ +VP    PG        G G G        +SM      F RA   K+  E++++ + E+  +  E+EME  +DM+DV REAIQ  EE+GIVFIDEIDKIC+  D+R  +D S+EGVQRDLLPLIEG  ISTKHGN+NTD+ILF+ SGAFH  KP+DLLAELQGRLPIRVELKGLTEED++RILTEPVTNLI QQ  L+ TE + L FTD+AVREIARVAA +N+T+ENIGARRLHTV+E++VE ISFD+++   G+ +T+    V  RV  L+ ++D+SK+IL
Sbjct:   82 IGRKLKPREVVEQLNKYIVGQADAKRAVAIALRNRWRRQKISDELRQEVSPKNILMIGPTGCGKTEIARRLAKLSEAPFVKVEATKFTEVGFHGRDVDQIIRDLVENAINMVKKHRKERLRKQVQHLVESRILDVLTGANVAERSRATFERLLRTGELEDRIIEFDVPVSTNPGNQPISFVGGEGKG--------ISME----VFGRAFGEKKT-ERKRMTIAESREVFEEMEMENAIDMTDVVREAIQETEENGIVFIDEIDKICSSGDFRRSSDPSSEGVQRDLLPLIEGSVISTKHGNVNTDHILFVGSGAFHSSKPSDLLAELQGRLPIRVELKGLTEEDLHRILTEPVTNLIKQQTELIKTEGVTLNFTDDAVREIARVAAEINQTIENIGARRLHTVVEKVVEDISFDSSEMEAGSTVTITAEFVLERVGKLMKKTDLSKFIL 517          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|673053547|ref|XP_008880734.1| (ATP-dependent protease HslVU, ATPase subunit [Aphanomyces invadans] >gi|574463599|gb|ETV90664.1| ATP-dependent protease HslVU, ATPase subunit [Aphanomyces invadans])

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 271/460 (58.91%), Postives = 349/460 (75.87%), Query Frame = 0
Query:  130 DDTPLSTTGSEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            ++TP+     + +   L+P+E+V+ LDKYIVGQ DAK+AVA+ALRNRWRR +LPDDLR E+ PKNILMIGPTGCGKTEIARR+AKL+ APF+KVEATKFTEVGFHGRDVDQII+DL+E S+ + KK R E ++ +    VE++++  L G +    +++TF  LLR G L++R+I V+V +   P  +       P G    + N N S    +    + I   + MEK+++ V +A P+L E+E+E  +DM DV +EAI   EE+GIVFIDEIDKIC+   YRGADAS EGVQRDLLPLIEG TISTKHGN+NTD+ILFI SGAFH  KP++LLAELQGRLPIRVELK LTE+D++RILTEPV NLI QQ ALL+TEN+ L F ++A++E+ARVA  +N TVENIGARRLHTVLE++VE ISF+A+D PEG V+T+ K +VH RV  +L +SD+SK+IL
Sbjct:   41 EETPMD---DDELGRKLKPKEVVDQLDKYIVGQKDAKKAVAVALRNRWRRQQLPDDLRPEVSPKNILMIGPTGCGKTEIARRLAKLAQAPFVKVEATKFTEVGFHGRDVDQIIKDLLENSIQLVKKHRMERVRKDIAGVVEQRIIDALAGQHTGAQSRQTFLKLLRDGELDERMITVDVRSSNNPNSI-GAISIDPSG----KVNSNNST---VNDLMKVISGGKKMEKKQMTVADARPILEEMELENAIDMGDVVKEAISEAEENGIVFIDEIDKICSSGAYRGADASDEGVQRDLLPLIEGSTISTKHGNVNTDHILFIGSGAFHSVKPSNLLAELQGRLPIRVELKALTEQDLWRILTEPVANLIVQQKALLATENVNLNFEEDAIKEVARVAYEINHTVENIGARRLHTVLEKVVEDISFEASDYPEGHVLTITKEIVHDRVGAMLKKSDLSKFIL 489          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|698810286|ref|XP_009838172.1| (ATP-dependent protease HslVU, ATPase subunit [Aphanomyces astaci] >gi|574106975|gb|ETV72490.1| ATP-dependent protease HslVU, ATPase subunit [Aphanomyces astaci])

HSP 1 Score: 546.199 bits (1406), Expect = 0.000e+0
Identity = 268/451 (59.42%), Postives = 343/451 (76.05%), Query Frame = 0
Query:  139 SEPVAAALRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDRLIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            S+ +   L+P+E+V+ L+KYIVGQ DAK+AVA+ALRNRWRR +LPDDLR E+ PKNILMIGPTGCGKTEIARR+AKL+ APF+KVEATKFTEVGFHGRDVDQII+DL+E S+ + KK R E ++ +    VE++++  L G +    +++TF  LLR G L++R+I V+V +  G  G        P G    + N N S    +    + I   + +EK+++ V +A P+L E+E+E  +DM DV +EAI   EE+GIVFIDEIDKIC+   YRGADAS EGVQRDLLPLIEG TISTKHGN+NTD+ILFI SGAFH  KP++LLAELQGRLPIRVELK LTE D++RILTEPV NLI QQ ALL+TE + L F D+A++E+ARVA  +N TVENIGARRLHTVLE++VE ISF+A+D P+G V+T+ K +VH R+  +L +SD+SKYIL
Sbjct:   47 SDELGRKLKPKEVVDQLNKYIVGQNDAKKAVAVALRNRWRRQQLPDDLRPEVSPKNILMIGPTGCGKTEIARRLAKLAQAPFVKVEATKFTEVGFHGRDVDQIIKDLLENSIQLVKKHRMERVRKDIAGVVEQRIIDALAGQHTGAQSRQTFLHLLRSGELDERMITVDVRSS-GNAGNIGSISIDPSG----KVNSNSST---VNDLMKVISGGKKLEKKQLSVADARPILEEMELENAIDMGDVIKEAITEAEENGIVFIDEIDKICSSGAYRGADASDEGVQRDLLPLIEGSTISTKHGNVNTDHILFIGSGAFHSVKPSNLLAELQGRLPIRVELKALTENDLWRILTEPVANLIMQQKALLATEQVNLTFDDDAIKEVARVAYEINHTVENIGARRLHTVLEKVVEDISFEASDYPDGHVLTITKEIVHDRIGAMLKKSDLSKYIL 489          
BLAST of EWM25843.1 vs. NCBI_GenBank
Match: gi|1173946637|gb|OQR95148.1| (ATP-dependent hsl protease ATP-binding subunit hslU [Achlya hypogyna])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 265/446 (59.42%), Postives = 340/446 (76.23%), Query Frame = 0
Query:  146 LRPRELVEYLDKYIVGQADAKRAVAIALRNRWRRHKLPDDLRTEIIPKNILMIGPTGCGKTEIARRIAKLSDAPFIKVEATKFTEVGFHGRDVDQIIRDLVEISVNMTKKRRSEAIKSEAQKAVEEKVLQILTGPYAREDAKETFRDLLRKGSLNDR--LIDVEVPADRGPGGLFDKAGAGPGGGAFAESNPNVSMADFIGKFSRAIMPKRPMEKRKILVKEAMPLLLEVEMEKLVDMSDVTREAIQSVEESGIVFIDEIDKICNPSDYRGADASAEGVQRDLLPLIEGCTISTKHGNINTDYILFISSGAFHQCKPADLLAELQGRLPIRVELKGLTEEDMYRILTEPVTNLIAQQVALLSTENIALEFTDEAVREIARVAALVNKTVENIGARRLHTVLERIVEQISFDAADKPEGTVITVDKGLVHGRVNDLLVESDVSKYIL 589
            L+P+E+V+ LDKYI+GQ DAK+AVA+ALRNRWRR +LPD LR E+ PKNILMIGPTGCGKTEIARR+AKL+ APF+KVEATKFTEVGFHGRDVDQII+DL+E S+ + KK R E ++ + Q  VE++++  L G ++   ++++F +LLR G + DR   IDV  PA        D +G             N SM + +    +A+  K+ +EK+K+ V EA P++ E+E+E  +DM DV +EAI   EE+GIVFIDEIDKIC+  +YRGADAS EGVQRDLLPLIEG TISTKHGN+NTD+ILFI SGAFH  KP++LLAELQGRLPIRVELK LTE D++RILTEPV NL+ QQ AL++TE + LEF DEAVREIA VA  +N+T+ENIGARRLHTVLE++VE +SF+A++ PEG  + V K +V  RV  +L ++D+SK+IL
Sbjct:   55 LKPKEVVDQLDKYIIGQNDAKKAVAVALRNRWRRQQLPDHLRPEVSPKNILMIGPTGCGKTEIARRLAKLAQAPFVKVEATKFTEVGFHGRDVDQIIKDLLENSILLVKKTRMEKVRKDIQHVVEQRIVDALAGQHSGAQSRQSFLNLLRAGEMEDREITIDVRSPASTTTTISMDSSG-----------KLNNSMNELM----KAVTGKK-LEKKKMTVAEARPVMEEMELENAIDMGDVVKEAIAEAEENGIVFIDEIDKICSTGNYRGADASDEGVQRDLLPLIEGSTISTKHGNVNTDHILFIGSGAFHAVKPSNLLAELQGRLPIRVELKALTEHDLWRILTEPVANLVLQQKALMATEKVNLEFDDEAVREIASVAYTINQTIENIGARRLHTVLEKVVEDLSFEASEYPEGYTVHVTKEMVQTRVGSMLKKTDLSKFIL 484          
The following BLAST results are available for this feature:
BLAST of EWM25843.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107710|gb|EWM25843.1|0.000e+0100.00atp-dependent hsl protease atp-binding subunit hsl... [more]
gi|676385965|ref|XP_009036261.1|0.000e+064.21hypothetical protein AURANDRAFT_37329 [Aureococcus... [more]
gi|675175639|ref|XP_008896704.1|0.000e+063.15ATP-dependent protease HslVU, ATPase subunit [Phyt... [more]
gi|695382857|ref|XP_009517532.1|0.000e+061.37hypothetical protein PHYSODRAFT_469020 [Phytophtho... [more]
gi|1214707967|gb|OWZ19301.1|0.000e+061.92ATP-dependent protease [Phytophthora megakarya][more]
gi|953496490|emb|CEG42090.1|0.000e+059.91atp-dependent protease atpase subunit [Plasmopara ... [more]
gi|301118923|ref|XP_002907189.1|0.000e+061.25ATP-dependent hsl protease ATP-binding subunit hsl... [more]
gi|673053547|ref|XP_008880734.1|0.000e+058.91ATP-dependent protease HslVU, ATPase subunit [Apha... [more]
gi|698810286|ref|XP_009838172.1|0.000e+059.42ATP-dependent protease HslVU, ATPase subunit [Apha... [more]
gi|1173946637|gb|OQR95148.1|0.000e+059.42ATP-dependent hsl protease ATP-binding subunit hsl... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4877rna4877Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications