rna4876, rna4876 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4876
Unique Name	rna4876
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1432
Alignment location	CM002464.1:562414..565443 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF726
Orig transcript id	gnl\|cribi\|Naga_100021g52.8787.mrna
Orig protein id	gnl\|cribi\|Naga_100021g52.8787
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:562414..565443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100021g52	gene4710	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4876	rna4876-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25844.1	cds4864	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:562414..565443+
coding sequence from alignment at CM002464.1:562414..565443+

mRNA sequence

>rna4876 ID=rna4876|Name=rna4876|organism=Nannochloropsis gaditana|type=mRNA|length=1432bp
GATGTTTGCGAGCAACCTTCACGCATTTTTTCCAACCCAAGCATGTCCGA
CCCTTTTCCATATTATGATTTTATGTAACATCTAATAAGTTGGTTTGTAC
TTCTCCTGGAAGTGCGCACAATTCTCCCTCTTCCTTATCATGAATTGCAG
CGAGAAAGTCAAGTCGTAAGTGGTCACACGCTTCCTTCAATTTCGGTCCC
TCAACATTAGCTTTGTTCCCTTTCTTGCATGAACATCCTTCCCTTATGCA
CATATAAAGCTATCAGGCATGGTAAGAAATTGTAGGTTGCCTGTGAGCAC
TTTCTTGCCCTCCTCGAAGTACCCACGGGTCGGCGCTACCGGGGGTCCTG
GAACAGATCGTCCACTTGGCGTTCATAAGGGAAATGAAATTCCAGAAGTA
TCCTCGTCATTACTATATGTACCTGCCTTAAACTCAAAAATCGAGTTTAA
CGCGAGGTGTTACAAAAGCTTGACTGACCTTTCAGACGTTGAAATGGATT
TGGCGTTGTGTAATCAAATCGTGCCGTTTCCACGTGGCTCTTCTGTAGCT
CGGAGGAACCGGTTGTGGCAATCTTTCACAATGCCAGCACCGGGGATCGC
GACCACAATTCTTGTAGGACTTATGGGCCTACTTTTCTTACTTTGTCGCA
AAGGTCGGATACGCAAAGCACGATTATTAGAGTTATTGGCCGCTTCCGCT
GGAGGTCTACTTTCCTCTTCTTGTTGTGCTGTGCAAGTGCTGCTTAATAC
CTTTTCCATAGGATGTGCGGGTTTTGCTGCGCTCGACCATTTGAGACCCT
TTTTCATCTCATTGACTTTTTCGACTCTTATTTACAAGACGATTGTTTAT
GACTTGAGGACATACAAACAGCTTTGGCGTTCTTCTCCCTCTTGGCTTGT
GGCGGTGATTTTGACCATGTTTCCCACCATAATGAGAAAGTTAAATCGTG
GAATGGGCCTTCGCGAGTTGACAATGTTGAGTGGAAGCTTACCCTGCGAG
AACAAGGCAGCTTCACCAACCGTGATCTTACAATACAAGGTGGAAGGCAT
GAAATGCGAGGCATGTGCCAACGGCCTTAAATTAGCATTGCAGGCCCTGC
AAAGCGACGTACGAGCAAGGGTTTTCTATGAAAAAGGGATAGTATTTCTG
ATAAGGATGCAAAAAGGCGCTGATCCCGATGTGGAAACGGCGCGCGACTT
GGAGCAGGGGGTCGCTCAGGTCATGAAGGAACGGGGCTACAGGTGCAGGT
TGGAGCGGACAGCCTTGTCATTGTGATCGACGGCCGACTCGCCAGGACAG
GGCCGCTGTGAACGAATGTACACTGCTTCGCTGGCACTCAATGTATCAAA
AAATCGCATGTGTCTTGACTGTACAGTTACCGCATCTTTATCCGTAAAAA
GTAAAGAAACGTCCCAAACGAGTCACAAATCC

protein sequence of rna4876

>rna4876-protein ID=rna4876-protein|Name=rna4876|organism=Nannochloropsis gaditana|type=polypeptide|length=866bp
MALAMLSTEERVCLLGLLALSMPSQDQAFGRYNLRLLRTVSNMLGLQENH
CSALYPLLHSEGNDVKIRHTQLLAFLKPFEGAESLAFDEKVQFAQASCKN
HTYTEELGLKQEPPADQAYHISGKRFSGSAVYHERRRRYLILRDLMISLA
CRSLYDARTRRIMMRLASDAFEISWRNIACVEAFTASYLYEIWEARQEKE
KINKGLRYAKITAAAVGGGALLALTGGLAAPAIGIGLSAMSATGAVVAGL
TSTASVATLFGASGAGLVGYKMRRRTAALDQFEFRHVEPSGDKKESDLGR
MAICICISGWLVEDESEYDTPFGVEPRNSDVAARLRLFYSRHNPQNIKYA
TLLADEFQGRESELEHECLRKYNASPFDDRNKKKRGNSKSPRKYLYDSLP
EAEKEEIFQLIASYDEPSVHAGTDEHTHESVRISRRARLSRGDSASCKSS
SKCRSDDSSYSKSTTTLINMMHECDDNGDEVSVESQSNTENEDYLLNAEI
HRIVGLQYSSTSEGLSPSKSIDRAEIDPMMLSRIDREPRCSNLPFCLSRS
RQVENRKDQGEKCEVQDESELGAKVFDALLDSECRDLSQDFSPWWLDMFP
YLETFTLHWESKALSKMGSSVMDIVASFGQQAALEVLTFTAAASLVSALA
WPITLLQAADMIDNSWTIACEKADRAGQLLAQILVRKERGHRPIVLIGFS
MGARLIMACLSELARIHNSWEDGQNDKGQKPEVQIKASTSAVQLSPTAST
PSREKTETGSPVSGLIDTVVLMGAPVSCSESSWVKARKVVAGRLVNCYSK
KDWVLSLMYRYHKLVTNAAGIAPVHVCGIENVDVSELVPGHQHYATKIKD
ILLLVGLEDSYLKMNK

mRNA from alignment at CM002464.1:562414..565443+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4876 ID=rna4876|Name=rna4876|organism=Nannochloropsis gaditana|type=mRNA|length=3030bp|location=Sequence derived from alignment at CM002464.1:562414..565443+ (Nannochloropsis gaditana)
CACTCTCAGCTTACATAAAAAACAATGGCCCTAGCAATGCTCTCTACGGA
GGAGCGGGTCTGCCTTTTAGGATTGTTGGCATTATCCATGCCCTCGCAGG
ATCAAGCTTTCGGACGCTACAACTTGCGCTTGTTGCGGACAGTCTCAAAC
ATGCTTGGACTACAGGAGAATCATTGCTCGGCGCTATATCCTTTATTGCA
CTCAGAGGGAAATGATGTAAAAATTCGGCATACGCAACTTTTGGCGTTTC
TGAAGCCTTTCGAAGGAGCAGAAAGTTTAGCTTTTGACGAGAAAGTCCAG
TTCGCACAAGCATCATGTAAAAATCACACATACACAGAAGAACTTGGGCT
CAAGCAAGAGCCACCAGCTGATCAAGCTTATCATATCAGTGGCAAGCGCT
TTTCAGGGTCAGCAGTCTATCACGAGCGGCGGCGTCGTTATTTGATCCTT
CGCGATCTCATGATAAGTCTGGCTTGTCGATCTTTGTACGACGCCCGTAC
CCGACGCATAATGATGCGCTTAGCATCAGATGCTTTTGAAATCAGTTGGC
GCAACATTGCTTGCGTTGAGGCATTCACGGCGTCATACCTGTACGAGATT
TGGGAAGCGcgtcaagaaaaagaaaagattaACAAGGGCTTACGATATGC
TAAAATTACGGCGGCTGCCGTAGGAGGAGGCGCCCTGCTGGCGCTAACAG
GCGGTCTCGCAGCCCCAGCAATTGGGATTGGACTTTCAGCCATGAGCGCG
ACAGGCGCTGTGGTTGCCGGACTTACAAGCACTGCCAGTGTAGCCACGCT
TTTTGGAGCGTCGGGTGCAGGCTTGGTGGGTTATAAGATGAGAAGGCGAA
CAGCAGCCTTGGATCAATTCGAGTTCCGGCACGTGGAGCCAAGCGGAGAT
AAGAAGGAGAGTGATCTTGGACGGATGGCCATCTGCATTTGCATCTCTGG
ATggttggtggaggacgaaagcGAGTACGATACGCCATTCGGCGTCGAAC
CCCGCAACTCAGACGTCGCGGCACGTTTGCGCCTCTTTTATTCTCGACAT
AATCCACAAAATATCAAGTATGCGACATTGTTGGCTGATGAATTTCAAGG
CCGGGAGTCTGAGTTGGAGCACGAATGCCTGCGAAAATATAATGCCAGCC
CTTTCGACGATAggaacaagaaaaaaaggggtaACAGCAAATCACCGCGA
AAGTATCTTTACGATAGCTTaccggaggcggagaaggaagagatcTTTCA
GCTCATTGCATCGTATGACGAACCTTCGGTTCATGCCGGAACAGATGAAC
ACACACATGAATCAGTAAGAATTTCTCGCAGGGCGCGTCTTTCAAGAGGC
GATAGTGCCAGTTgcaaaagcagcagcaagtgCAGAAGCGATGATAGCAG
TTACAGCAAAAGCACCACAACTTTAATTAACATGATGCATGAGTGTGATG
ATAACGGAGATGAAGTAAGTGTTGAGTCTCAAAGCAACACTGAAAATGAG
GATTATCTGCTAAATGCTGAGATCCACCGTATCGTAGGCCTTCAATATTC
GTCTACGTCCGAAGGCCTTTCGCCCTCAAAATCGATCGACCGAGCTGAAA
TTGATCCTATGATGCTTTCCCGTATCGATAGAGAACCAAGATGCAGCAAC
TTGCCATTTTGCCTTTCACGGTCTCGTCAGGTTGAAAATCGGAAAGATCA
AGGGGAGAAGTGTGAAGTTCAAGATGAAAGTGAATTAGGGGCAAAGGTTT
TTGATGCTTTGCTGGACTCTGAGTGTAGAGATCTCTCTCAAGATTTCTCT
CCGTGGTGGCTCGATATGTTTCCATACTTAGAAACATTTACATTGCATTG
GGAATCTAAAGCCCTATCAAAAATGGGCTCGAGCGTAATGGACATTGTCG
CTTCATTTGGACAACAAGCTGCATTGGAAGTGTTGACATTTACAGCGGCG
GCTTCCCTAGTCTCTGCCCTTGCCTGGCCTATCACCCTTCTGCAAGCCGC
GGATATGATTGATAATTCTTGGACGATAGCCTGCGAAAAGGCGGATCGGG
CTGGTCAGCTTTTAGCTCAAATCCTTGTCCGAAAAGAACGTGGACATCGC
CCGATTGTATTGATCGGTTTCTCCATGGGAGCACGTCTGATAATGGCTTG
TTTATCAGAACTTGCAAGAATCCATAATTCATGGGAAGACGGGCAAAATG
ATAAGGGACAAAAGCCTGAAGTACAAATCAAGGCTTCCACATCGGCTGTA
CAACTGTCTCCTACAGCTTCAACACCTAGTAGGGAGAAAACAGAGACGGG
AAGTCCAGTATCAGGTCTTATTGATACAGTCGTTTTAATGGGTGCACCTG
TTTCGTGCAGTGAATCAAGCTGGGTGAAGGCGCGCAAAGTTGTCGCTGGT
CGGTTGGTCAATTGTTATTCCAAGAAAGACTGGGTCTTAAGTCTCATGTA
TCGGTACCATAAACTGGTTACGAACGCGGCAGGTATCGCCCCTGTACATG
TATGTGGTATCGAGAATGTTGACGTTTCTGAACTTGTTCCTGGTCACCAG
CACTATGCAACGAAGATCAAAGACATATTGCTCTTGGTAGGTCTGGAAGA
CTCCTACTTGAAAATGAATAAATGATATTCCACCAGAACGAAAGATTTGG
CGAAATGATGTAGTTGAAAGATATTAACACTATGTGGAGGACAAACATCG
TGACTTTAAGAACGAGCTGCGGTTAGAGTGTGTTCTTTGCGAAATAGTTC
ATCGACGCAGAGATTTGTAAATACTGGTTCGATAAAGCTCATAAAGTCTA
CCGTTTTGTTATATCGATTTACAATTGGACTTATCACTTGCTCTTGGCTT
CTCTTTACTGAATCGATACACATCTAACTTGGTAGTTCTTACTGGTATCA
CCTTAGAATACGCTTTCAACTGTGAGAGTGGACTTCGCTCTCTGACGGTC
AAACTGTAGTGAGCAAACAGAAAATGTTCAGCTGTAAAAAAGTTCCCCCT
ACAAGAAGAAAGACTCTAGATTAGTATGTG

Coding sequence (CDS) from alignment at CM002464.1:562414..565443+

>rna4876 ID=rna4876|Name=rna4876|organism=Nannochloropsis gaditana|type=CDS|length=2601bp|location=Sequence derived from alignment at CM002464.1:562414..565443+ (Nannochloropsis gaditana)
ATGGCCCTAGCAATGCTCTCTACGGAGGAGCGGGTCTGCCTTTTAGGATT
GTTGGCATTATCCATGCCCTCGCAGGATCAAGCTTTCGGACGCTACAACT
TGCGCTTGTTGCGGACAGTCTCAAACATGCTTGGACTACAGGAGAATCAT
TGCTCGGCGCTATATCCTTTATTGCACTCAGAGGGAAATGATGTAAAAAT
TCGGCATACGCAACTTTTGGCGTTTCTGAAGCCTTTCGAAGGAGCAGAAA
GTTTAGCTTTTGACGAGAAAGTCCAGTTCGCACAAGCATCATGTAAAAAT
CACACATACACAGAAGAACTTGGGCTCAAGCAAGAGCCACCAGCTGATCA
AGCTTATCATATCAGTGGCAAGCGCTTTTCAGGGTCAGCAGTCTATCACG
AGCGGCGGCGTCGTTATTTGATCCTTCGCGATCTCATGATAAGTCTGGCT
TGTCGATCTTTGTACGACGCCCGTACCCGACGCATAATGATGCGCTTAGC
ATCAGATGCTTTTGAAATCAGTTGGCGCAACATTGCTTGCGTTGAGGCAT
TCACGGCGTCATACCTGTACGAGATTTGGGAAGCGcgtcaagaaaaagaa
aagattaACAAGGGCTTACGATATGCTAAAATTACGGCGGCTGCCGTAGG
AGGAGGCGCCCTGCTGGCGCTAACAGGCGGTCTCGCAGCCCCAGCAATTG
GGATTGGACTTTCAGCCATGAGCGCGACAGGCGCTGTGGTTGCCGGACTT
ACAAGCACTGCCAGTGTAGCCACGCTTTTTGGAGCGTCGGGTGCAGGCTT
GGTGGGTTATAAGATGAGAAGGCGAACAGCAGCCTTGGATCAATTCGAGT
TCCGGCACGTGGAGCCAAGCGGAGATAAGAAGGAGAGTGATCTTGGACGG
ATGGCCATCTGCATTTGCATCTCTGGATggttggtggaggacgaaagcGA
GTACGATACGCCATTCGGCGTCGAACCCCGCAACTCAGACGTCGCGGCAC
GTTTGCGCCTCTTTTATTCTCGACATAATCCACAAAATATCAAGTATGCG
ACATTGTTGGCTGATGAATTTCAAGGCCGGGAGTCTGAGTTGGAGCACGA
ATGCCTGCGAAAATATAATGCCAGCCCTTTCGACGATAggaacaagaaaa
aaaggggtaACAGCAAATCACCGCGAAAGTATCTTTACGATAGCTTaccg
gaggcggagaaggaagagatcTTTCAGCTCATTGCATCGTATGACGAACC
TTCGGTTCATGCCGGAACAGATGAACACACACATGAATCAGTAAGAATTT
CTCGCAGGGCGCGTCTTTCAAGAGGCGATAGTGCCAGTTgcaaaagcagc
agcaagtgCAGAAGCGATGATAGCAGTTACAGCAAAAGCACCACAACTTT
AATTAACATGATGCATGAGTGTGATGATAACGGAGATGAAGTAAGTGTTG
AGTCTCAAAGCAACACTGAAAATGAGGATTATCTGCTAAATGCTGAGATC
CACCGTATCGTAGGCCTTCAATATTCGTCTACGTCCGAAGGCCTTTCGCC
CTCAAAATCGATCGACCGAGCTGAAATTGATCCTATGATGCTTTCCCGTA
TCGATAGAGAACCAAGATGCAGCAACTTGCCATTTTGCCTTTCACGGTCT
CGTCAGGTTGAAAATCGGAAAGATCAAGGGGAGAAGTGTGAAGTTCAAGA
TGAAAGTGAATTAGGGGCAAAGGTTTTTGATGCTTTGCTGGACTCTGAGT
GTAGAGATCTCTCTCAAGATTTCTCTCCGTGGTGGCTCGATATGTTTCCA
TACTTAGAAACATTTACATTGCATTGGGAATCTAAAGCCCTATCAAAAAT
GGGCTCGAGCGTAATGGACATTGTCGCTTCATTTGGACAACAAGCTGCAT
TGGAAGTGTTGACATTTACAGCGGCGGCTTCCCTAGTCTCTGCCCTTGCC
TGGCCTATCACCCTTCTGCAAGCCGCGGATATGATTGATAATTCTTGGAC
GATAGCCTGCGAAAAGGCGGATCGGGCTGGTCAGCTTTTAGCTCAAATCC
TTGTCCGAAAAGAACGTGGACATCGCCCGATTGTATTGATCGGTTTCTCC
ATGGGAGCACGTCTGATAATGGCTTGTTTATCAGAACTTGCAAGAATCCA
TAATTCATGGGAAGACGGGCAAAATGATAAGGGACAAAAGCCTGAAGTAC
AAATCAAGGCTTCCACATCGGCTGTACAACTGTCTCCTACAGCTTCAACA
CCTAGTAGGGAGAAAACAGAGACGGGAAGTCCAGTATCAGGTCTTATTGA
TACAGTCGTTTTAATGGGTGCACCTGTTTCGTGCAGTGAATCAAGCTGGG
TGAAGGCGCGCAAAGTTGTCGCTGGTCGGTTGGTCAATTGTTATTCCAAG
AAAGACTGGGTCTTAAGTCTCATGTATCGGTACCATAAACTGGTTACGAA
CGCGGCAGGTATCGCCCCTGTACATGTATGTGGTATCGAGAATGTTGACG
TTTCTGAACTTGTTCCTGGTCACCAGCACTATGCAACGAAGATCAAAGAC
ATATTGCTCTTGGTAGGTCTGGAAGACTCCTACTTGAAAATGAATAAATG
A

Synonyms

Publications