rna4852, rna4852 (mRNA) Nannochloropsis gaditana

Overview
Namerna4852
Unique Namerna4852
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1617
Alignment locationCM002464.1:497918..500512 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100021g24.8762.mrna
Orig protein idgnl|cribi|Naga_100021g24.8762
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:497918..500512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100021g24gene4686Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25819.1cds4840Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4852rna4852-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4852 ID=rna4852|Name=rna4852|organism=Nannochloropsis gaditana|type=mRNA|length=1617bp
ATGGAGACTAACGGCGCAAATGGCAGCGGGCGGGCGCCCGTCACTGAGGC
AGGCGGCGGACCCGACGCCCAGGACGGTCTTCGGAGGCCCGTGACGGCAG
GACTTGAGCAGTCAGCTTGGACGCAACAAGAAAAACGAGTTATTAAATCT
ACTCGGTACAGGCAGCTTTGCGAGCTCGGTGGATCCGCCTCGTTTGAGCC
TGCTTGCCTGGAGCGGCAAATAGTTGCGGCGGTTGCTCCTGACAGAGAGC
TTCCCGCGGTGGTTGGGCGGATTCATGAAATATACGATGAAATTCGGCGC
AACAAAAAGGATATGATAGACGGTGTTCCAGCACTGCGCGCGGTGAAGCA
AAAGTGCACGAATACAAACTGCGACAATGATGACCCGAATGATTTCATTC
CAAGCCGAGGGGGGGCCGTCGCTTGCATGCGGTGCGGGGACTGTCAGTCA
GACTACGTGATCCATGAGGGCGAGATGTACCGGAATTTCGCGGGAGAGGA
GGATCGCTCGCATCACGGTCCTGCTTTGAACCCTCTTTACTCGGCGTCAT
ACAACCTGGGCACGCAATTTACGGGTCTGCGCGGTCAGAAACGCAACACA
GGTCGGGAGACCGATTTCAGTGTCAGCAACATCGGGCGGGACGGGGCGGC
GGTGGGGGGGACGATGGCTACACGTGTGGAGTACAAGGACGATCAGAAAT
CCAAGGCCTTCCGGATCATGCGTGAGCAAGGTGCCAACTTGGCTTTGCAC
GGGCTTGTCCGAAAGAAGGCTGCCGAGCTCTTCGCCGCCTACCGAGACGC
TCGGGATCGCCTCTTTGATTTTGAGGCCGTGGTGGCTGCATGCTTGATAG
CTGCGCATTTAGAGGTCCTGGTAGAGGAAGGCTCGGACGGCAGCGGCGTG
ACCTTCGCATTTGCGTGCCCGGGCTGCGGCCTAAGGGGCTTCACTGTCAA
GCGCGACGCGGAGAAGCACTGCGTGGTGAGCACGGGGCCCGCGGGCAGCA
GCGATAGCATGGAAGGCAGTTTGGAGCATTCGGCGGGGGCGGGAGGCAGG
TCGCACGGCGGAGGCCGGCCTCAGAGCTGGCGAAAGGCAAGCTGCGAGGC
GGCAGCAGACCCGGATGTGGCCAAGATGGGTCTGGCGGAGACGCGACGAT
TGCTTTTGTGGGTATCTGAAGGGGCGCCTTACCAGCAGGCGGCCGTGGAC
GGGGTTTGTGCTGGTTTGCAGGCCGAGATGCGGTCTCAGTCGGGCAAGGA
GAGCGGCTCGGACGGTGAGGGCTCGGGGGACGGGCAGGCTCCGACAGAGG
GGGAGGGGGACACGAGGGAGGTAGAGCGAGAGAGCGCCTTCAAGGCGGGG
CAGTTGCTGGTCATGGCGAGCCTCAAGGTCCTGACACGCTGGTGCGGGGA
CGACTCGGAGGCCGGCCGCCTCTTCTTCGACTACCTCCAGGGCGTGAAGA
AGCGCAAGATGGAGAGGGGCGCCCTGCTCGAGGAGGAGGAGCAGGATCGG
AAGCGGCGGCGGCAATACGAAGAAAGGCCCATCTTCCAGGAGCTGTCTGT
GTCGCTCAAGAGCGAGGGGGCAAGCAACAACAGTACAGACGCGACCACAC
CCGCAACAGTTTCATAG
back to top

protein sequence of rna4852

>rna4852-protein ID=rna4852-protein|Name=rna4852|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MLCGLFLEHLTLKDFVWEAPGTNKAAIKAMSAPLWMGLLSAYTLVIFLSL
LTAGVVSKIVPSLVTPLFHSFFERAAPEDFFRPQPLRGEQQASFTPSPSV
KTVGALTTPRSANGDGKMLAQ
back to top

mRNA from alignment at CM002464.1:497918..500512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4852 ID=rna4852|Name=rna4852|organism=Nannochloropsis gaditana|type=mRNA|length=2595bp|location=Sequence derived from alignment at CM002464.1:497918..500512- (Nannochloropsis gaditana)
CATCCCACAGAACACTTGTGCCTGTTTCCAAAACATTGGACCTGTGCGTC
CGTCAGAAAGAATTATATTTGAGGCCGAAGGTGTCCCTTAAAGTACTCAG
AGGCATGTAAGCGGGACGAGACTTGTCACTTTCTCCCCGGCACGTGCCTT
GATACGTGCGTGATGTGACATGTCAAACATTGAAGCAAGTTGGGCCTCCT
CACGGACTATCGTTTTCACCACACGTGAGCGCCGCAAGTTAGTTTAAGAG
CAAGAGTATGATAAACACCTGTTGTTCTTATTTATCTCAAACATTTCTAT
TCTCAATACGAAAGGTAAAGCAAAAAGCTTGGATTATAAACCAACAGGAA
CGTGCTACGATCCACTTCAACACTGAGTCCAAGGTCCATCTATCGATTGT
TAGTCGGCACATAATTTACTCTTTAACTCATGCTGTGCGGGCTGTTTCTT
GAGCATTTAACACTGAAAGACTTCGTGTGGGAGGCCCCTGGGACAAATAA
GGCGGCGATCAAAGCTATGTCGGCCCCGTTGTGGATGGGGCTCTTGTCCG
CCTACACGCTCGTCATCTTCTTGTCCCTGCTCACGGCAGGCGTGGTCTCG
AAGATCGTCCCCTCACTTGTTACACCATTATTTCATTCTTTTTTTGAGAG
AGCGGCACCTGAAGATTTCTTCCGTCCTCAGCCGTTGCGGGGCGAGCAGC
AGGCATCTTTCACGCCCAGTCCCTCTGTGAAGACTGTCGGGGCCCTGACG
ACGCCTCGCTCGGCGAATGGTGATGGGAAAATGCTGGCGCAATGATGTTT
GATTTTTGTTTACGAGTGTGATCATGGCCTAATGACGAGAGGTTGGAGAT
AGCGCTCTTGGGAGGTAACGATTCTTTACGGTGCCGGCACAAAGCTTGGC
TTGATATGACGGGACAGGAGGATGGGGCGATAAAAATGCTTGTCAGACAT
GTCCCTTGGCATATGGAGGCAAAAAGGAAGTAGGGGGCCTCGTAAGGTTT
GGTGGCCGGGTGCAGTAGTAGTGTAAGCGGTCGGACCGACATACACTGTC
TCCTGGCAGGTTGATGGACTGAGAGATGTATGGGAGACGCTTGCAAATTT
AGCATGGCAGCGTGAAAAGGAAAAAGAGACTCATGTGCAGGGCATGTAAA
TAAAAAATGAGGGCACCGCGCAATCGGGAAGTGGACGACATACAATCGTT
GGCGAGAAGCAAGGCGAGCAAGAAGACGGACGTCCCAGGTCCAGGCAAGC
CATGAGGATCAGTGGAATGTGACAAGTCAAACCCACAGTCCTTTCCAGAT
TAGACTCACGGGGCTATTGATTAAATTTATAAACATTTGGGATTGCTTTG
CACGTGGGCCGGCCCCGTGAAACATGCTGCACTATGAAACTGTTGCGGGT
GTGGTCGCGTCTGTACTGTTGTTGCTTGCCCCCTCGCTCTTGAGCGACAC
AGACAGCTCCTGGAAGATGGGCCTTTCTTCGTATTGCCGCCGCCGCTTCC
GATCCTGCTCCTCCTCCTCGAGCAGGGCGCCCCTCTCCATCTTGCGCTTC
TTCACGCCCTGGAGGTAGTCGAAGAAGAGGCGGCCGGCCTCCGAGTCGTC
CCCGCACCAGCGTGTCAGGACCTTGAGGCTCGCCATGACCAGCAACTGCC
CCGCCTTGAAGGCGCTCTCTCGCTCTACCTCCCTCGTGTCCCCCTCCCCC
TCTGTCGGAGCCTGCCCGTCCCCCGAGCCCTCACCGTCCGAGCCGCTCTC
CTTGCCCGACTGAGACCGCATCTCGGCCTGCAAACCAGCACAAACCCCGT
CCACGGCCGCCTGCTGGTAAGGCGCCCCTTCAGATACCCACAAAAGCAAT
CGTCGCGTCTCCGCCAGACCCATCTTGGCCACATCCGGGTCTGCTGCCGC
CTCGCAGCTTGCCTTTCGCCAGCTCTGAGGCCGGCCTCCGCCGTGCGACC
TGCCTCCCGCCCCCGCCGAATGCTCCAAACTGCCTTCCATGCTATCGCTG
CTGCCCGCGGGCCCCGTGCTCACCACGCAGTGCTTCTCCGCGTCGCGCTT
GACAGTGAAGCCCCTTAGGCCGCAGCCCGGGCACGCAAATGCGAAGGTCA
CGCCGCTGCCGTCCGAGCCTTCCTCTACCAGGACCTCTAAATGCGCAGCT
ATCAAGCATGCAGCCACCACGGCCTCAAAATCAAAGAGGCGATCCCGAGC
GTCTCGGTAGGCGGCGAAGAGCTCGGCAGCCTTCTTTCGGACAAGCCCGT
GCAAAGCCAAGTTGGCACCTTGCTCACGCATGATCCGGAAGGCCTTGGAT
TTCTGATCGTCCTTGTACTCCACACGTGTAGCCATCGTCCCCCCCACCGC
CGCCCCGTCCCGCCCGATGTTGCTGACACTGAAATCGGTCTCCCGACCTG
TGTTGCGTTTCTGACCGCGCAGACCCGTAAATTGCGTGCCCAGGTTGTAT
GACGCCGAGTAAAGAGGGTTCAAAGCAGGACCGTGATGCGAGCGATCCTC
CTCTCCCGCGAAATTCCGGTACATCTCGCCCTCATGGATCACGTAGTCTG
ACTGACAGTCCCCGCACCGCATGCAAGCGACGGCCCCCCCTCGGC
back to top

Coding sequence (CDS) from alignment at CM002464.1:497918..500512-

>rna4852 ID=rna4852|Name=rna4852|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at CM002464.1:497918..500512- (Nannochloropsis gaditana)
ATGCTGTGCGGGCTGTTTCTTGAGCATTTAACACTGAAAGACTTCGTGTG
GGAGGCCCCTGGGACAAATAAGGCGGCGATCAAAGCTATGTCGGCCCCGT
TGTGGATGGGGCTCTTGTCCGCCTACACGCTCGTCATCTTCTTGTCCCTG
CTCACGGCAGGCGTGGTCTCGAAGATCGTCCCCTCACTTGTTACACCATT
ATTTCATTCTTTTTTTGAGAGAGCGGCACCTGAAGATTTCTTCCGTCCTC
AGCCGTTGCGGGGCGAGCAGCAGGCATCTTTCACGCCCAGTCCCTCTGTG
AAGACTGTCGGGGCCCTGACGACGCCTCGCTCGGCGAATGGTGATGGGAA
AATGCTGGCGCAATGA
back to top
Synonyms
Publications