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Properties
| Property Name | Value |
|---|
| Product | endo-beta- -glucanase |
| Orig transcript id | gnl|cribi|Naga_100054g30.5563.mrna |
| Orig protein id | gnl|cribi|Naga_100054g30.5563 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:443131..446041 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4819 ID=rna4819|Name=rna4819|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp
GGACGCCATAAAGAAGTTTCGCATCCCTTAGTGTGTACAACACAGTACTT
TATTGCTAGATGTGCTAATGGGAAGTTTTAATTGGTATCACGGCTGAAGT
ATCTCGGCATAGCATGCAGGAAGGTAGTCCATAGTAATTCATACGTTATC
TAGCTACAAGAGCCTTTTTTGGAGCGCGCAAAAGCTCGTTCTACAGGTTG
AAAGCGCAACACACGAAGAAAATAATGCAGACGAGCGCTTGATTTGATAA
GTAATGGGCTTGAATCGTGGAAGAGCGCGACTGTCCGCAGGAACGCATTC
TCATTGTGCCCCTACGCACCGAACTCCGCAACGACGACACCCACAGGCTT
ATGTTCAGCGGAATTTTCCCCAAAAAGCCGGATACGGCGGGGGAAAAAGC
GCTGGCGCAGGCCTTGGGGGGAGCGGAGGATGATGAGGGAGACAGCAGTA
GCTCTCGAGGCAACAAAGGCGGGGGAAAAGGCTCGGGCCTCTTCGACCCG
TCAGGACTCGAACGGTAGGGGGGTATGGTGGAGAAATTGTATTCTATTCC
AGATGGTGGAAACGATTGTCTAAACTCTGCCCCAATCTTTATTTTCACGC
CATACTCATATGGTATTCGTGTGATATGTATTTTCTTCCATCACTCTACC
CGATGCGCAGCGCTGCCAAAGCCGCCAAGGAGCTCGACAAGTCCACAAAT
GCTCGCGAGGCCCTAAAATTGATCGAGCTACAAGAAGTTAGCAAACAACG
GGAGGCGGAGGCGAGACGTACAGAGTATGAGGCACACGTGAAGAGTTTGG
AGATCCAGCGTGCCCAGAAGGAAGGAGAAGAAGCCCGCAAGACCTTGGAC
TCGCAGACAGAGCACGAAAAGCGGAGGGCCGAGTACAGGGACCAGCTGGA
GCGTAAGCGGTACGTGGATCAGCTGAACGCAGAGAAGTATCGGAAAGAAG
AAGAGCTTCGGAAGCAGGAAGAGTACCTTGCCAAGCAGGAGGCTATCAAG
CGCAAGACGCTCGAGTACGAGGCGGAGCTCCGGCAGCAGACGGAACTGGC
GCGGGTGAAAGCCGAGACAGAGGGACGGATCAAGCAGGAGCGGCAGAACC
ACGACTTACGGGTGGCACAGGCGCGGGCCGAGGCGAAAGAGTACCGAGAA
ACCGTCCTGGAAGGGATCAAACTCGCGAGCACCGAGTTGGGGAAGGGCCT
GCAGGAGTTCCTGACCGACAAAGAGCGCTTGACCTCCGCGGCGGTGACGC
TCTCGGCTGTAGCTCTGGGGGTCTACGCGGCCAAGACATCGACTGGGGTG
GCAGGGCGCTACATCGAGGCGCGGCTGGGTAAGCCCTCCCTGGTCCGGGA
CACCTCTCGCCGCACCGCCCTCCAGGTGCTGCGGAATCCTGTACCCTCCC
TCCGCCGGCTCCTCACCACCACCAAGGCAGAGGACGCGCTCAAAGGGGTG
GTGCTGGAGAAGGGCCTGACGGAGCGGCTGACGCGCGTGGCCATCTCCAC
GGCCAATACCAAGGCGAACGGGGCTCCCTTCCGGAACTTGCTCCTGCACG
GCCCCCCGGGGACAGGCAAGACCCTCTTTGCCAAGGGCTTGGCCGCCAAC
TCCGGTCTGGACTATGCGATCCTGACAGGCGGAGACGTTGCGCCCTTGGG
CAAGGAGGCAGTGACGGAGATCCACAAGGTCTTCGACTGGGCGGGCACCA
CACGGAAGGGCGTGCTCCTCTTTGTGGACGAAGCAGACGCCTTTTTGCGC
CGACGCAGCACGGAGCATATGTCTGAGGAGCTCAGGAATGCCTTGAATGC
CTTCCTGTACCGGACAGGGGAAGCCAGCGACAAGTTCATGGTAGTCTTCG
CCTCGAACCAGCCCGAGCAGTTCGACTGGGCTATCAACGACCGCATCGAC
GAGATGGTCGACTTCAATCTCCCGGGGGAGGAAGAGCGGCTGGAGATGGT
CACCATCTACCTGGAAAAATACGTCCTCAACCCACCATCGACCAAGGCGC
GGCCCATAACGGTGGAGGGGATCGGAGAGGAGGAGGTGAAATACGCAGCG
AAGGTCACTGTTGGGTTCTCGGGCCGAGAGATCTCAAAGTTGGCGATAGC
GTGGCAGGCAGCAGCATATGGAGCGAGAGAAGGAACAGCAACTTTGGACA
AGGAACTGTTCCTGCGGGTGCTGGAGCAACACCTGGCGTCCAAGAGGAAA
AAGAAAGACTGGTTCGAGGCGTCCCTGCCGGGGGGTCCCGAAGTTGAGGG
GAAGGCGTGGGAGGCTCTGGTCACGGACGGGGAGGGGCCATCTTCAAAGT
AGTAGGGAAGGAGGAGAGTGGGAAGTTTGCTGTGCGTAATTTGTGGGATG
AGAGCCCGAAGTCCCAGAGAAAAGGTGTTTTGGCGGAGGGAGCCTGCAGA
AGCAGGATCCAAGGGCGCAGGGGAGGGGATGGCAAAGATTCTGAAGTCGT
TAGGTTTGACCTGAAGTTATGCCTTGGACGGAAAGGCTTCGCACGCCATA
GTGGCCAACTTGTAAGCGGTAATATCGCGTGTCGGGGGCGTTTGGGACCA
AATAAGAACGAAAATAAGCATCCCTAAGGATAAGTCCGGACGAGGGGTAC
AAG back to topprotein sequence of rna4819 >rna4819-protein ID=rna4819-protein|Name=rna4819|organism=Nannochloropsis gaditana|type=polypeptide|length=503bp
MKLLRLAIAVVVMGGSWDIKCNQKGSKNGIVLAEARRRRRHKPSSPPNLE
PAGIVQTTEQKVKAPNEKYNYNQVIYLSNLFYEAQRAGKLPSDNRIPWRR
DSNIADGFDSDVELSGGYYDAGDYLIFGWPLASSTTVLIWGLLEYEDAYT
EAGELGHMLATVKWPLDWLLKAHVGPDALYVQVGDGKVEHRYWGRPEFES
KPRPALLVNASVPGTEPLADAAAAMAAGFLAFQHRDPVYAHTLLLHAQQL
FEAAMAHPRKFTLSSPYYESSGYRDELAWAAAWLHKATGCASYLSQALNL
AEIFNKSDNMGAFGWDSKDAGVYLLLYQLTRDTKHAKVFASYLADWLPQA
SSATAIKRTPRGLTYYLTWGPLRWAANTAFLALLAADMGLSPGPYRAFAR
SQIHYMLGDNGNFSYVVGFGSTFPKAIHHRAASCGRYGCICDTTPSANTL
YGALVGGPDEKDMYLDDCRDYKHTEVSVDYNAGFQGAVAGLKHLSLMGLL
ESF back to topmRNA from alignment at CM002464.1:443131..446041- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4819 ID=rna4819|Name=rna4819|organism=Nannochloropsis gaditana|type=mRNA|length=2911bp|location=Sequence derived from alignment at CM002464.1:443131..446041- (Nannochloropsis gaditana)
ACACGACACGTTTTTCGTGGATTGCTAGTTAGAACATCATACGTGAAAGT
TCGAAATCAATGATGTTGTGCATTCCAGGCATCTTTAGTTTGTCAAACTC
AGTCATCGCCTGCTGTGGAGAGACTTGCAGCTATAATTCTGGCGAAGGCG
AGCACACACTGCCAAGCAACCTCAAGCGCTAGCTGGTACGATAAGACAGG
AATAGCGATCTTTTTCACGCCTTGCAACAACATGTAAATATAACGAATAG
ATAGGAACCACTCGCAGGTTATCATTTTCTGTCCCTTTGATGTCGAAAAG
CAAGTTGAAGATGTCAATGCATACATGAGACATTTGCAGTGAGCTACTCC
CGGAAAAAATATCGAAACGGAAGCAGTTATCATGTGACATTCATTATTCA
AAATATCAATATACCTCTCTAGCCCTGTATTATAGGAAAAGTGTTCGGTG
GTCTCTAATGAAGAATTGAACTGCAACCGAGACTCCGACTACTTTGACAG
CGGCTGGCGAAGAGATGAAATTATTGCGATTGGCAATAGCAGTGGTAGTG
ATGGGAGGGAGTTGGGATATTAAATGCAACCAAAAAGGAAGCAAAAACGG
TATCGTGCTGGCCGAAGCCCGCAGAAGAAGAAGACATAAACCGTCCTCCC
CTCCAAACCTGGAGCCGGCTGGTATCGTCCAGACGACCGAGCAAAAAGTG
AAAGCTCCCAACGAGAAATATAATTATAATCAGGTGATATATCTCTCCAA
TCTATTTTATGAAGCGCAGCGTGCAGGCAAGCTTCCCTCAGACAATCGCA
TCCCCTGGCGGCGAGACTCGAATATCGCGGACGGGTTCGATAGCGATGTG
GAATTGAGTGGAGGTTACTACGATGCGGGAGACTACCTCATATTTGGATG
GCCTCTTGCCTCGTCTACAACAGTGTTAATATGGGGTCTTTTAGAATATG
AGGACGCCTACACGGAGGCGGGAGAACTGGGGCATATGCTTGCGACGGTC
AAATGGCCCCTTGACTGGCTACTTAAAGCGCACGTGGGCCCGGACGCGCT
GTACGTTCAAGTTGGGGATGGCAAAGTCGAGCATCGGTACTGGGGTCGCC
CGGAGTTTGAGAGCAAGCCCCGTCCTGCTTTGCTGGTCAACGCCTCCGTC
CCAGGCACCGAACCCCTAGCGGACGCAGCTGCCGCGATGGCGGCCGGGTT
TCTGGCGTTCCAGCATCGCGACCCAGTCTACGCCCACACGCTGCTGCTGC
ATGCGCAGCAGCTTTTCGAGGCCGCCATGGCGCACCCGAGGAAGTTTACC
CTATCGTCGCCTTACTACGAGTCGAGTGGATACAGAGACGAGCTGGCATG
GGCCGCGGCCTGGCTCCATAAAGCGACCGGGTGCGCGTCGTATCTGTCTC
AAGCCCTTAATTTAGCCGAAATTTTCAATAAAAGCGATAACATGGGGGCT
TTTGGATGGGATAGCAAGGATGCGGGCGTCTACTTACTCTTGTATCAGCT
GACGAGGGACACGAAGCACGCGAAGGTCTTCGCGTCCTACCTGGCCGACT
GGCTGCCTCAAGCGTCGAGTGCGACCGCCATCAAGCGCACGCCCAGAGGT
CTGACATACTACTTGACCTGGGGCCCGCTTCGATGGGCGGCCAACACGGC
TTTTTTGGCCCTGCTGGCGGCAGACATGGGTCTGAGTCCCGGGCCGTACC
GGGCGTTCGCGCGTTCTCAGATTCATTACATGTTGGGGGACAACGGAAAT
TTCTCGTACGTGGTAGGCTTTGGTTCTACCTTTCCAAAAGCAATCCACCA
CAGGGCCGCGTCTTGTGGGAGATATGGCTGCATTTGCGACACCACGCCCT
CGGCTAATACGCTGTACGGGGCCCTCGTGGGAGGGCCTGACGAAAAGGAT
ATGTATTTAGACGACTGTCGGGACTACAAACACACTGAGGTCAGTGTGGA
TTATAATGCTGGATTTCAAGGAGCGGTGGCAGGCTTGAAGCATCTGTCAC
TAATGGGGTTACTGGAGTCATTTTAAGACGGAAGGGGGCTGGAAAAGAAG
ACATGGACGGTCAGGAAGCTGGCCTGTCACAACCTCCACGGTAAGACCAA
GAAGTTTCCAGGGCATGGAAGATGTAGAATTGGGATGAAGCTTATAAATG
TGCGGCGCTTTGTGGTGCACAGCGGCCCTCTAAGAGTATCTTTCCATGTT
GACGTGACGACTGGGGGCGATCTGCTCGGTCTTCACAAAAATTGGATTGT
GCGAGAAACGCACAATCAACGGAGGAGGGGCAGACTGCAATTCTCGCTAA
ATGTATGGCTAACATTAAATTCGTTCTATCTCTTTCGTCAATGGAGAGAA
CGTCAGAATTACATATTTGTCTCAAGAACGACTTGTGAAACGCGAGGGGC
GTTTGAGCGTTGCAATTAGCGTGTCTACAATGCGACGCCTTCCATAAGAC
ACTGCGAAACACTTCATGAATTGATATTAGATGTGGGTTTAATCAAAGGG
ATGGCGATACGCCCTACCCGACACAAAGCTCTTGTAAATTTCCATGTAAG
AGATTTCCTTCGAGCCGCCTGGAGAAAATTATATATGTTTCGGCGGAAAT
TCCGACCTGTATCATCCGACTTCCAAGAAAAGCACCGCTGTACACAGACA
GTCTTGTATCGGAAAGATATGCATGTAAGAAGGGTATGTTGTTGACGCAT
GGATTTCCGAAATTAATTGAAAATTGCATACGGCGCCACCAGAGTGCGAC
TCTCATCAGAAAAGGTTAACGATGAAATTTGAGAGGCACAAAATTACCCG
TATTTAAACAAAGTCCAAGTCGGATTTAAAAAGCATCAACACTGCAGGAG
CAATCAAACTATCCCTGCACTCCAGACGAGGCCATTGCCTCTCTACCACT
TTTGCGTGACG back to topCoding sequence (CDS) from alignment at CM002464.1:443131..446041- >rna4819 ID=rna4819|Name=rna4819|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002464.1:443131..446041- (Nannochloropsis gaditana)
ATGAAATTATTGCGATTGGCAATAGCAGTGGTAGTGATGGGAGGGAGTTG
GGATATTAAATGCAACCAAAAAGGAAGCAAAAACGGTATCGTGCTGGCCG
AAGCCCGCAGAAGAAGAAGACATAAACCGTCCTCCCCTCCAAACCTGGAG
CCGGCTGGTATCGTCCAGACGACCGAGCAAAAAGTGAAAGCTCCCAACGA
GAAATATAATTATAATCAGGTGATATATCTCTCCAATCTATTTTATGAAG
CGCAGCGTGCAGGCAAGCTTCCCTCAGACAATCGCATCCCCTGGCGGCGA
GACTCGAATATCGCGGACGGGTTCGATAGCGATGTGGAATTGAGTGGAGG
TTACTACGATGCGGGAGACTACCTCATATTTGGATGGCCTCTTGCCTCGT
CTACAACAGTGTTAATATGGGGTCTTTTAGAATATGAGGACGCCTACACG
GAGGCGGGAGAACTGGGGCATATGCTTGCGACGGTCAAATGGCCCCTTGA
CTGGCTACTTAAAGCGCACGTGGGCCCGGACGCGCTGTACGTTCAAGTTG
GGGATGGCAAAGTCGAGCATCGGTACTGGGGTCGCCCGGAGTTTGAGAGC
AAGCCCCGTCCTGCTTTGCTGGTCAACGCCTCCGTCCCAGGCACCGAACC
CCTAGCGGACGCAGCTGCCGCGATGGCGGCCGGGTTTCTGGCGTTCCAGC
ATCGCGACCCAGTCTACGCCCACACGCTGCTGCTGCATGCGCAGCAGCTT
TTCGAGGCCGCCATGGCGCACCCGAGGAAGTTTACCCTATCGTCGCCTTA
CTACGAGTCGAGTGGATACAGAGACGAGCTGGCATGGGCCGCGGCCTGGC
TCCATAAAGCGACCGGGTGCGCGTCGTATCTGTCTCAAGCCCTTAATTTA
GCCGAAATTTTCAATAAAAGCGATAACATGGGGGCTTTTGGATGGGATAG
CAAGGATGCGGGCGTCTACTTACTCTTGTATCAGCTGACGAGGGACACGA
AGCACGCGAAGGTCTTCGCGTCCTACCTGGCCGACTGGCTGCCTCAAGCG
TCGAGTGCGACCGCCATCAAGCGCACGCCCAGAGGTCTGACATACTACTT
GACCTGGGGCCCGCTTCGATGGGCGGCCAACACGGCTTTTTTGGCCCTGC
TGGCGGCAGACATGGGTCTGAGTCCCGGGCCGTACCGGGCGTTCGCGCGT
TCTCAGATTCATTACATGTTGGGGGACAACGGAAATTTCTCGTACGTGGT
AGGCTTTGGTTCTACCTTTCCAAAAGCAATCCACCACAGGGCCGCGTCTT
GTGGGAGATATGGCTGCATTTGCGACACCACGCCCTCGGCTAATACGCTG
TACGGGGCCCTCGTGGGAGGGCCTGACGAAAAGGATATGTATTTAGACGA
CTGTCGGGACTACAAACACACTGAGGTCAGTGTGGATTATAATGCTGGAT
TTCAAGGAGCGGTGGCAGGCTTGAAGCATCTGTCACTAATGGGGTTACTG
GAGTCATTTTAA back to top
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