EWM25859.1, cds4790 (CDS) Nannochloropsis gaditana

Overview
NameEWM25859.1
Unique Namecds4790
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:408175..408405 -
Alignment locationCM002464.1:406976..408064 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25859.1
Productuv excision repair protein
Orig transcript idgnl|cribi|Naga_100054g12.5551.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:408175..408405 -
CM002464.1supercontigCM002464.1:406976..408064 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006289nucleotide-excision repair
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003684damaged DNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR029071Ubiquitin-rel_dom
IPR015360XPC-bd
IPR000449UBA/Ts_N
IPR015940UBA/transl_elong_EF1B_N_euk
IPR000626Ubiquitin-like
IPR006636STI1_HS-bd
Homology
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|585107727|gb|EWM25859.1| (uv excision repair protein [Nannochloropsis gaditana])

HSP 1 Score: 855.129 bits (2208), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSGGGSGGSTGGDTGSGDQMY 439
            MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSGGGSGGSTGGDTGSGDQMY
Sbjct:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSGGGSGGSTGGDTGSGDQMY 439          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|553195184|ref|XP_005856095.1| (UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526] >gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 424.091 bits (1089), Expect = 6.869e-141
Identity = 333/349 (95.42%), Postives = 340/349 (97.42%), Query Frame = 0
Query:   29 KLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEAL 377
            KL+  + GA+  +Q  + KGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERN+ +
Sbjct:  229 KLEGVEEGAE--KQARVVKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNKTM 575          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|219112521|ref|XP_002178012.1| (RAD23 [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 213.001 bits (541), Expect = 9.871e-61
Identity = 166/420 (39.52%), Postives = 226/420 (53.81%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKP-KTTPVAAPAPAATTAPATP-SVGTTPETTTTGTAATPPAPSPAD---AAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITS----------LEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQ--QQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLI-----EALASGAAPGLGGMGGLAGAPPP---GSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            MKL VK + G+K  +  E +  + ++K  ++A ++       K+IH GKVLKD+D+I S G+ E DF V MV+ A KP    P A P P     P  P +   + ET     AATP AP+ AD   A  V  L SMGF EA V+  L A  G+PD A   L +G P +    AA    TSA ++   S          L+A R  PQF+ LRRLVQSNP  + QVL  IGQQ PQLLQ I A Q  F+ +MNEP+E   +  A          PS           LGG++    A  +   +P Q+AQ++Q M  ++ NQ+ AA++GL P+Q++Q + Q+I     E L+      +GG     G  P    GSQ + LT EE A +++L EMGF+R+EA Q FLACDKN  +AA++L 
Sbjct:    1 MKLLVKTLKGEKFEIHAEESQTVADVKGIIEATKSELSAGTLKLIHSGKVLKDEDSIASAGIKENDFLVVMVTKAKKPVAAKPAATPTPVPAATPGPPVAAAASIETPAPTAAATPAAPTRADDVSAEAVANLTSMGFPEAEVKHCLRAAHGNPDIAVEFLTNGIP-EGVAEAAAAMNTSAVTSPSASSESSSGSGQPLQALRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPQLLQEINANQALFLQIMNEPVESSASVSAAPAVSGSSDAPS-----------LGGLDSGAAAMMEGMGNPAQMAQMIQGMSPEELNQM-AAMMGLSPDQLRQ-TAQMIGQMPPEQLSQFMMQAMGG-----GEGPESMGGSQVLRLTEEEMAAVDRLAEMGFDRSEAAQAFLACDKNEALAANLLM 401          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|1210526180|dbj|GAX15098.1| (UV excision repair protein RAD23 [Fistulifera solaris])

HSP 1 Score: 199.904 bits (507), Expect = 8.623e-56
Identity = 155/435 (35.63%), Postives = 207/435 (47.59%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPV----------AAPAPAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQ--VEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITS-----------LEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAG--GAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGL---------------PPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            MKLTVK + G K  VEVE    + E K+ ++ E+     +  K+IH GKVLKD+DTI S G+   DF V MV+ A KP   P           AA AP A+  P T +  T         A           +Q  V+ L +MGF EA VR  L A  G+PD A   L +G           P A SAA N+  S           L+A R  PQF++LRRLVQSNP  + QVL  IGQQ P+LL+ I A Q  F+ MMNEP+    +S                P  +    G  + A   G   +   +P Q+AQ++Q+M   + +Q +A ++GL               PPEQ+QQF   +      G                 G Q + LT EE A +++L EMGF+R+EA Q FLACDKN  +AA++L 
Sbjct:    1 MKLTVKTLKGAKFDVEVEETQTVQEAKSAIEKEKPELFASTLKLIHSGKVLKDEDTIASCGIKPNDFLVVMVTKAKKPAAGPATPAETLKVEEAAKAPEASVQPTTSTAQTPAAPAAPSVATPAAPTRTDTFSQEAVDNLTAMGFPEAEVRHCLRAAQGNPDVAVEFLTNG----------IPDAVSAAMNATESSSATPAQATQPLQALRNHPQFNELRRLVQSNPQMLQQVLAQIGQQQPELLEEINAHQALFLEMMNEPVTAAPSSA---------------PTGSRAPTGSSDSASGMGMPMEGMGNPAQMAQMIQSMSPSELDQ-MAQMMGLSSDQLRMTAQMLGQMPPEQLQQFMAHMGGGEGHG-----------------GQQVLRLTEEEMAAVDRLTEMGFDRSEAAQAFLACDKNEALAANLLM 392          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|1210517375|dbj|GAX23632.1| (UV excision repair protein RAD23 [Fistulifera solaris])

HSP 1 Score: 196.438 bits (498), Expect = 1.906e-54
Identity = 159/438 (36.30%), Postives = 210/438 (47.95%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPA-------PAATTAPATPSVGTTPETTTTGTAATPPAPSPADAAQ--------VEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSITS-----------LEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAG--GAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGL---------------PPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            MKLTVK + G K  VEVE    + E K+ ++ E+     +  K+IH GKVLKD+DTI S G+   DF V MV+ A KP  TP A PA       PA   AP  P   T     T    A P   +PA   +        V+ L +MGF EA VR  L A  G+PD A   L +G           P A SAA N+  S           L+A R  PQF++LRRLVQSNP  + QVL  IGQQ P+LL+ I + Q  F+ MMNEP+    +S                P  +       E A   G   +   +P Q+AQ++Q+M   + +Q +A ++GL               PPEQ+QQF   +      G                 G Q + LT EE A +++L EMGF+R+EA Q FLACDKN  +AA++L 
Sbjct:    1 MKLTVKTLKGAKFDVEVEETHTVQEAKSAIEKEKPELVASTLKLIHSGKVLKDEDTIASCGIKPNDFLVVMVTKAKKPAATP-ATPAETPKEEEPA--KAPEVPVQATISTAQTPAAPAAPSVATPAAPTRTDTFSQEAVDNLTAMGFPEAEVRHCLRAAQGNPDVAVEFLTNG----------IPDAVSAAMNATESSSATPAQATQPLQALRNHPQFNELRRLVQSNPQMLQQVLAQIGQQQPELLEEINSHQALFLEMMNEPVTAAPSSA---------------PTGSRAPTASSESASGMGMPMEGMGNPAQMAQMIQSMSPAELDQ-MAQMMGLSSDQLRMTAQMLGQMPPEQLQQFMAHMGGGEGHG-----------------GQQVLRLTEEEMAAVDRLTEMGFDRSEAAQAFLACDKNEALAANLLM 392          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|953497390|emb|CEG40877.1| (uv excision repair protein rad23 [Plasmopara halstedii])

HSP 1 Score: 190.66 bits (483), Expect = 3.202e-52
Identity = 157/435 (36.09%), Postives = 208/435 (47.82%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATP------------------PAPSPAD------------------AAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSIT-SLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQ--GNPFAALGGLGGMEGAGGAEGQNGPSPQ-QLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            MKLTVK + G    +E E    I  +K K++ E      A+QK+IH GKVLKDD T+    V E DF V MV+   KPK     AP P+AT +P+TP   + P   +   +A P                  P+ +PA                   +A V  L+ MGF E  VR+AL A   +P+ A   L +G P Q  +   T +++ A +   T +LEA R  PQFD LR+LVQSNP  +  VL  IG QSP+LL++I   QD FV M+NEPI G   +GA        PS      PF     +   E     + Q   S Q Q+A  +   PEQ R  L   L  LPPE ++Q    +          G    G           RI LT EEAA +++L EMGFER + +Q +LACDKN  +AA+ L 
Sbjct:    1 MKLTVKTLQGVAFPLEAELTDDISAVKQKIE-ELQKFPVAQQKLIHAGKVLKDDSTLADYNVKENDFLVVMVT---KPK-----APKPSATPSPSTP--ASAPSVVSAAPSAVPNTSSASSSSSATASAVSTPSAAPATVAANSSREGSNLVADEQMSATVHHLMDMGFPEDQVRSALRAAFNNPERAVEYLMTGIPEQAASEQTTVTSSGAGNEGTTNTLEALRNHPQFDALRQLVQSNPQTLPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPI-GTREAGA-------TPSSSTGATPFTLGTNVSSTE--QQMQQQFSESLQMQIAAQMGMTPEQLRG-LSQMLSNLPPEAMEQMMASMGGGSGLAGLGGASDAGN-------AGHRIMLTEEEAAAVDRLCEMGFERTDVIQAYLACDKNEALAANFLM 406          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|673051021|ref|XP_008879471.1| (UV excision repair protein Rad23 [Aphanomyces invadans] >gi|574464790|gb|ETV91834.1| UV excision repair protein Rad23 [Aphanomyces invadans])

HSP 1 Score: 169.859 bits (429), Expect = 1.294e-44
Identity = 126/279 (45.16%), Postives = 163/279 (58.42%), Query Frame = 0
Query:  125 VEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSI---TSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPI-EGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQQFSGQLI----EALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            V  LV MGF E  VRAAL+A   +P+ A   L +G P QP  P A  S T+ AS  +   TSLEA R  PQFD LRR++Q+NP A+  VL  IG Q+PQLLQ+I   Q++FVAM+NEPI E  T S          PS   +PF          G  GA+G   P+PQQL Q++ ++   Q+   +AA +G+  EQ+QQF+  L     EA+A       GG GG  GAP     RI LT EEAA + +LV+MGF+RNE +Q +LACDKN  +AA+ L 
Sbjct:  141 VRQLVDMGFPEDQVRAALQAAFHNPERAVEYLMNGIPEQPAAPPA--STTAPASGGLGAPTSLEALRHHPQFDALRRMIQANPSALPTVLQQIGAQNPQLLQLIHQNQEQFVAMLNEPIAEAATPSAT--------PSVPASPF----------GDSGADGM--PTPQQLQQLMASL-SPQQQAAMAAQMGMTYEQLQQFTQMLNTMPPEAMAQLMQQMAGGEGG-HGAP----TRIHLTEEEAAAVGRLVDMGFDRNEVIQAYLACDKNEALAANFLM 391          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|813105031|ref|XP_012194230.1| (UV excision repair protein Rad23 [Saprolegnia parasitica CBS 223.65] >gi|641540789|gb|KDO34552.1| UV excision repair protein Rad23 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 169.474 bits (428), Expect = 2.099e-44
Identity = 124/309 (40.13%), Postives = 167/309 (54.05%), Query Frame = 0
Query:  122 AAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNS--------ITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAM-PEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSG 421
            +A ++ L  MGF E  VR AL+A   +PD A   L +G P     P     A +A +            SLEA R  PQFD LRRL+QSNP A+  VL  IG QSP+LL++I A Q++FV M+NEPI    A  A        P+ Q       GG G M+  GGA     P+PQQL Q++ ++ PEQQ    +AA +G+ P+Q+QQFS Q++  +   A   +    G          RI LT EEAA +N+LV+MGF+RNEA+Q +LACDKN  +AA+ L  ++ +G       G  GG   D   G
Sbjct:  141 SATIQQLCDMGFPEDQVRLALQAAFNNPDRAVEYLMNGIPDTRQIPVGGAPAAAAPAAPSAAGGLAGTNSLEALRNHPQFDALRRLIQSNPAALPTVLQQIGGQSPELLRLIHANQEQFVRMLNEPI----AEAA--------PADQ-------GGFGDMDDMGGA----MPTPQQLQQLMASLSPEQQAQ--MAAQMGMTPQQLQQFS-QMLSQMPPEAVQQMMQQMGGGAPGAGAPTRIHLTEEEAAAINRLVDMGFDRNEAVQAYLACDKNEALAANFLM-DSMSGDYDDAAGGNFGGDSNDDIYG 422          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|1173944339|gb|OQR93090.1| (hypothetical protein ACHHYP_02937 [Achlya hypogyna])

HSP 1 Score: 167.162 bits (422), Expect = 1.812e-43
Identity = 120/310 (38.71%), Postives = 165/310 (53.23%), Query Frame = 0
Query:  122 AAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAPIQPPTPAATPSATSAASNSI---------TSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAM-PEQQRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAETGGAGFGGAGGAGGSGGDGGSG 421
            +A ++ L  MGF E  VR AL+A   +PD A   L +G P     P ++  A  A +             +LEA R  PQF+ LRRL+Q+NP A+  VL  IG QSP+LL++I A Q++FV M+NEPI   TA           PS +GN       +G  +  GGA     P+PQQL Q++ ++ PEQQ    +AA +G+ P+Q+QQFS Q++  +   A   +    G          RI LT EEAA +N+L +MGF+RNEA+Q +LACDKN  +AA+ L       G     AG  GG   D   G
Sbjct:  146 SATIQQLCDMGFPENEVRLALQAAFNNPDRAVEYLMNGIPDTRHIPTSSAPAAGAPAVGAPAAGGLAGANTLEALRNHPQFNALRRLIQANPAALPTVLQQIGGQSPELLRLIHANQEQFVRMLNEPITETTA-----------PSDEGN-----FDMG--DDMGGA----MPTPQQLQQLMASLTPEQQAQ--MAAQMGMTPQQLQQFS-QMLSQMPPEAVQQMMAQMGGGAPGAGAPTRIHLTEEEAAAINRLCDMGFDRNEAVQAYLACDKNEALAANFLMD--SMSGEYEDNAGNYGGDSNDDIYG 428          
BLAST of EWM25859.1 vs. NCBI_GenBank
Match: gi|1072230418|gb|OEU15151.1| (XPC-binding-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 166.007 bits (419), Expect = 9.121e-43
Identity = 155/426 (36.38%), Postives = 218/426 (51.17%), Query Frame = 0
Query:    1 MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKVLKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVGTTPETTTTGTAATPPAPS-----PADAAQVEGLVSMGFAEANVRAALEATGGSPDAAYALLESGAP--IQPP-----TPAATPSATSAASNSITSLEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQLQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQQRNQLLAALVGLPPEQVQ---QFSGQLI-EALASGAAPGLGGMGG---------------LAGAPPPGSQRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLF 395
            MKLTVK + G K VV+ EP   + E+K  +++  +    +  K+IH GKVLKD  +IES G+ + DF V MV+ A K       A    A    A  +  ++   T T   A  P  +     P +   V  L  MGF EA VR  L A+ G+PD A   L +G P  +QP        AA  S++S++  S  +L A R+ PQF+ LR+LVQSNP  +  VL  IGQQ P+LL  I A Q+ F+ MMNEPI   + + +         S       A  G+ G+   G  EG   P+  Q+AQ++Q M  ++ NQ+ A ++GL PEQ++   Q  GQ+  E L       + G GG                 G  P G Q + LT EE A +++L +MGF+R EA Q +LACDKN  +AA++L 
Sbjct:    1 MKLTVKTLKGSKFVVDCEPTNTVLEVKGIIESTNSDLPASNLKLIHSGKVLKDVTSIESCGIKQDDFLVVMVTKAKKAAAAKTPAATATAADKAAESATASSSPPTDTPAPAPAPDAAPAADFPEEV--VSSLTGMGFPEAEVRHCLRASSGNPDVAVEFLTNGIPPGMQPEEQAAAAAAAAVSSSSSSGGSGETLSALRSHPQFNALRQLVQSNPAMLQTVLTQIGQQQPELLTEINANQEIFLQMMNEPIAETSGTSSGSSSNSGSSSSLSASAGADAGMQGI-PPGMMEGMANPA--QMAQLIQNMSAEELNQM-ATMMGLSPEQLRSTAQMLGQIPPEQLQQYMMQAMQGGGGAEQNMMQAMQGAGGGAGGGGPGGPQVLRLTQEEMAAVDRLADMGFDRTEAAQAYLACDKNEALAANLLM 420          
The following BLAST results are available for this feature:
BLAST of EWM25859.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107727|gb|EWM25859.1|0.000e+0100.00uv excision repair protein [Nannochloropsis gadita... [more]
gi|553195184|ref|XP_005856095.1|6.869e-14195.42UV excision repair protein RAD23, partial [Nannoch... [more]
gi|219112521|ref|XP_002178012.1|9.871e-6139.52RAD23 [Phaeodactylum tricornutum CCAP 1055/1] >gi|... [more]
gi|1210526180|dbj|GAX15098.1|8.623e-5635.63UV excision repair protein RAD23 [Fistulifera sola... [more]
gi|1210517375|dbj|GAX23632.1|1.906e-5436.30UV excision repair protein RAD23 [Fistulifera sola... [more]
gi|953497390|emb|CEG40877.1|3.202e-5236.09uv excision repair protein rad23 [Plasmopara halst... [more]
gi|673051021|ref|XP_008879471.1|1.294e-4445.16UV excision repair protein Rad23 [Aphanomyces inva... [more]
gi|813105031|ref|XP_012194230.1|2.099e-4440.13UV excision repair protein Rad23 [Saprolegnia para... [more]
gi|1173944339|gb|OQR93090.1|1.812e-4338.71hypothetical protein ACHHYP_02937 [Achlya hypogyna... [more]
gi|1072230418|gb|OEU15151.1|9.121e-4336.38XPC-binding-domain-containing protein [Fragilariop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4802rna4802Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications