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Properties
| Property Name | Value |
|---|
| Product | uv excision repair protein |
| Orig transcript id | gnl|cribi|Naga_100054g12.5551.mrna |
| Orig protein id | gnl|cribi|Naga_100054g12.5551 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:406976..408405 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4802 ID=rna4802|Name=rna4802|organism=Nannochloropsis gaditana|type=mRNA|length=4753bp
GGGAAAAGGTGCCTATTGGGCACACGTTGGACGGAGAAAGGCTAGCCTAG
GCGCGGAGTGGCTCGGTTGGACTGCTTTTTGCCGGGGCGGGTGGTGCTGG
GAAACTGAACAGAGAAGGAACAATAGACGAGGTGTGCGACGACCCTGTCT
CAGAGATCGAGTCCCCAAACAGAGCGGGAGAAGCGCTGCCAAATGCACAA
ATACATGGTATGCTAAGAAAGACTACATTTCTGTGGTGTGAGAGTCCGCT
GGAAGTCCGGGAGGTGTCGGATTACGTGAAAGCAGCAGTCAGAGAGTAGG
AAGGAGGAAGAAAATGGAGGGGACTAGGAGGCCGCTGAATAATTGGGGAG
AGGAGCAGGACGGAAAATTCTCCCCTGTTTCCTCATTCTCGTACAAGCCT
CAGCGCGAATTCCGACAGACGGATAACGAGGACGTGCAAGACGACAAATA
TTGGATGGAGGCGCCTCCGCATCACTTGCCTCTCGGGGGACAGAGCGAGA
TGGGTTCGGGGGCAAGCCAGGGTCCAGGGGTCGCCTATCTCCAGCCGTCG
CCCTACGAGGGCAGCACCCATCCCCTCTACGGCCAACAGATGGGCCACGA
GAAGGAGTCAGGCCGCAGGCACCTGCTAGACTACCTGGATCAGCAGCAAG
ACACCCAGCATTGGGCCCATGAGCAATATCAGCAAAGACCACCCCAGCTC
GAGTCACACCAGGCGCCGTCCCATCAACAGCACGAGTCCATCCAGCATTC
CCGGCTAGAGATGATGCATCGCGTCAACTGCATGCAGCAAAGCCAGCAAG
AAGCGGATCGACAAACGTGTGCACTGAAAGAGCAACACCCTCGACGGCAA
ATGAACCTCGCAGGGGATCCTCATCAACTTCAGGAGCTCTTTAGTAGCCA
ACTCTCCTTTCAGGAGGAAGGGCACAGAGTAACGCAACGGGAAGCGGATC
TCACCGGCATTTCCAACGACACCTCAGCCCAGTACCTGCCTCGCTACCCC
AATAACGTGGAACCTGGCGGTAAAACTGGTCTTGGCGTTGGGTGTGGCCC
AAGCCAACAAAGAGCAGGGCCCGCAAGGATTGCCGCTACTCTCCAGTCGC
AGCAACTTCGACAGTACAAGCAGGGTTCTCGACATGCGCAGCAACCCGAA
GATTGCCCGGCGCAGAGTTTTTCGCCGTCGGACCCCTGTGCGGCTACCTT
GGAAGCTCAGCGACTGCTCCTCGAAGCCCGCCAGCGAAAACATCTTTTAC
AACAGTTGTTGGCCTTGCAACAGCAACAGCAACTTCAACAGCAACAACAA
CAACAACAACAACATCAGCCACACCAACAACAACTGTCGCGCCAGCATCA
TGTTCACCATGTGGCGCCCCATAGTAGACAGCAGCAGCAGCAGCAATGGC
AGCAGCAGCAATGGCAGCACGCACCGCAACACCAGTCTCTAGCACAACAA
TTACAAATAAATCACTGGCAGCGGCAAGGAAATCAAGAGCGACTGCAGAC
GCAGGTAGAGCAGTACGCGCCCTCGCATCAGCCCTTTTGGGGCTCCAAGG
CGGATCGAGGCCATGAAACCCCTTCCGTGTCCCTCCAACCAGTCTTGAAG
CAACTTGTCCCACACTCAGCCGAGCGTTCCTACAGCGAAGGAGACATCAG
TTTCTTCCGTTCCGCAGATAGCTCTCGTTTTCACCGCCCGACTGCTATTG
GTCAGCACCACAGTCAGCATCGCATTCCTCCGTCCTCCGTTCCCATGCAC
CACCTTCCCATCCATTTGCGAGGCAGCAAGCGTCATTTTGACAGAGGTGG
ACCTCCACACGGAATGCCGCACTCGGGCACAGGTGCCCCTGTCATTCCCA
CCTACAATCCTCCACCAGGTATGCTACAGCACGGTTTTAGCCAGCTTCCA
TCCGTACCGCCCATGCTGCATCAGCAGCATTCGTACCCCTCGCTTGTTCG
GGCATCCCCCGGGGTAGCACTCCCTCCTCGTCACCAGCCGCACGCCCACT
ACCTCCTCGAGGCCGCTGGTGCGTCCTCTAGTCTACCAGATATGGCTTGC
GTCCCTACCAACTTAATCATCTCCAAAATGGACGCCATGGCAATCAAGAG
GGCGGAGCTCGCCGAATCGCCGACGACTCGTATGCAATTCAAAGACTTTT
ACCGGCAATTTCGTATTAAGGAGCGTTTATCTTTTGAAGCCGCAAAAGAT
TACGCCATAGCTTGCTTTGAATTGCTCCCGTTGAGGGTTCACTGGAAAAT
TCTCCTGGAGTTGGCAGATCTAGCGAAACGGGAGAACAGGATCGCCGAAG
CCCGGCGCCTCTACCGCCGCGTCTGCCGTTTGCAACCTCACGCCGCGCAG
GCTTGGTTAGTGTACAGTAGGATGGAGGAGGAGTGCGGAGACGTGGAGAG
AGCAGACGGCATTTTGCAGAAAGGCCTCTTGTTTTGTGAGTACAGTGAAA
GTTTACTCGCCCGCGCCTTGAAGCACGCCGAGAGAAAAGGAGACCTGAGA
TTTGCCAGGTCACTCCTCAGTCGCCTGCGACACGTTAGCATCGACAAAGT
ATGGAGGACGGTGCTGGAGGGGGCTCTCCTGGAGGCGCGCGCAGGGAACA
ACCGAGTGGCGCGGAAGGTGTTTGAGTACTTGATTGGTTGCGTGCCGTGG
TACGGGCCCATCTACAACGAAGCTTTCCGTCTGGAGGAAAAATGCCAAGG
GCACGCGGCGGCCTTGGCGATCGTGGAACGTGGGCTGAAGGAGATTCCAC
GTTACGGCCCCCTGTGGTTCGGGGCTTTCAGGCTCTGCGAGCGACTGGAT
CTAGACGCGGGGAAGGACGCGGTCGCCCACGGGCTTGTCCCCGACCTGCC
CCGCACGCGCGACATGATATCCCGGGCCTTGGGATCCATCAGCAAGGAGC
TCATTTGGAAGGTGCATTTCGAGGCGGCACAGATCGAGGAGCGGGCCGCG
TCCACGGCGGCGGGCGTGCGGGTGTTGCCACGCGGTGGGCCCACAGAGGG
CTTGGCCGGCGCGTCTCTCCCAGTGCCTAATCTTGACCCGACAGGCAAGC
TCACAAGAGTAGAAACGGCCACTGCCATAGCCGCTATACCTGCCGTCCGG
GGTGAGCTCTTGGGGCGCTGCCGTCAATACTACGTAGATGCTGCCTTGAC
CGCCCCGTCGAATCTCCGGTGGAAGGTCTGGCTGGCAGGGGCCCGGACCG
AGTTGGGTGCAGGGAGGGTGGATGTCGCCCGAGCCTTACTTCGACGTGCG
TTTCGCGAGGTGCCCGATAAAAGCAAAGCCCATGTGTTTTTGGAATGTGC
ACGCTTGGAGGAGTACGTAGGAAATGTGGAGAAGGCGCGCAGTGTCCTCG
CACAGGCGCGGGTGGAGGCCCGTGGGGAGTGGAAAGTGTTCCTTGAATCC
GTGCTGCTGGAGATGCGCGCAGGGGAATGGGTTCGTGCCATCGACCAAGC
CCGTTCGGCGCTCAGCGTCCACACAGGTACCGGTCGGCTGTGGGCCATCC
TGGTGCAACTTCGCTATCTGGGAGGGGCCGGGGAGCAGGTTCGTGTGTTG
CGTCAAGCGCTCAGTGAAGTGCCTAAAAGCGGAGAGGTCTGGTGCGAGGG
GGCGAGGATTCATTTGAGCCCAGTGTCCTTCAATTTTGACCTGGAGTTGG
CGCAAAGATATTTGGATTTTGCGATTCAATTCACGCCGCAATACGGAGAT
TCTTTCCTTGAGCTCCTGCGCTTGACATTGGTCAGGCAGGTGATTGAGCC
GGTGGCGAGGTCCGTGATCGCCAAATGGGACGACGACACAACGTCCGGCG
TGGAAGGAAAAGGCAGCCAGGTGGTTGAAGCGGTGGATTGCCGAGTGCTA
GCGCTGCGATGCCCCTCTTTCGTCCTCGCGGTCGAGAAATTTATGACGAC
GGACACAGAGGAGCTGGAACTGCGGTGCTCGAATGCCGACCCGAATTACG
GGCTGTTCTGGTTCCACTGTCGGGACCTGCCCTCGGACTCGCCCCGCCTC
ATGATGCGTCGAGCAAAAGCTTTGCTGGCGGAGGATCTGTCCGTGCTTTT
TCCCCTGTACCTGGCTGCCATCTTGAGGAGGCATCGAGTGGAGAAGAGAG
TCGGGAAACGAACGGGATCTGGCACGGTGTGCCACACGGAGAGGCGACAG
AAAGCGGACGCCGACAACGTTAAGGAGCATAGGATCGCAGAAGGGATGAG
AGACATTGAGATGACGACAGGGAAGGTCCTACAGGACGAGAGGGGGTCAG
AGAAAACAGAGGAAGAGTCTCTCGAAGCTGCGATGGCGGGACTGGACGAA
ACGGCCAATAAAATGAAGGATAGGAAAGGCGAAGAATTTTTATCCCACCA
CAAGTCCACCGACAGGCTACCTCTATGCAGCAGCAATGAGGAGCTGGGGA
CGGCATTGATTATCTCGGAGGAGAGGAAAAATGATGGTAAGCTTGCGGAC
ACCAACATGGACAGTAGCACCTTTGTTGCCGTGCAAAGAAAAGCGTGGAG
GCTGAATAAAGCGAGAATTCGCGAGGAGGAGGCCATTGCACGGGAATGGG
AAAGAGACATCCAGAAAGCCATGCAGGCAGAGCCTCGTGTAGCTCCTATG
GCGTGGGACCCTGAAGGAAGAGAGATAGTGCTGAAGCCCGGCGACTTTAT
GACCGGGCTGGTCGGCTTGAACAGGATGGCGACCGACACGGGCAGCTTGT
CGAATGAGGAGAAGCGGAGGCTTCTTTTCGGCTCGGACCAGCTAGTACCG
TGA back to topprotein sequence of rna4802 >rna4802-protein ID=rna4802-protein|Name=rna4802|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MKLTVKDVGGKKMVVEVEPAMKIGELKTKLQAEQNGADPARQKMIHKGKV
LKDDDTIESTGVTETDFYVCMVSAAPKPKTTPVAAPAPAATTAPATPSVG
TTPETTTTGTAATPPAPSPADAAQVEGLVSMGFAEANVRAALEATGGSPD
AAYALLESGAPIQPPTPAATPSATSAASNSITSLEAFRALPQFDQLRRLV
QSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGDTASGAQQ
LQQQQQPSQQGNPFAALGGLGGMEGAGGAEGQNGPSPQQLAQILQAMPEQ
QRNQLLAALVGLPPEQVQQFSGQLIEALASGAAPGLGGMGGLAGAPPPGS
QRIELTAEEAANLNQLVEMGFERNEALQVFLACDKNLEMAASVLFQEAET
GGAGFGGAGGAGGSGGDGGSGGGSGGSTGGDTGSGDQMY back to topmRNA from alignment at CM002464.1:406976..408405- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4802 ID=rna4802|Name=rna4802|organism=Nannochloropsis gaditana|type=mRNA|length=1430bp|location=Sequence derived from alignment at CM002464.1:406976..408405- (Nannochloropsis gaditana)
ATGAAACTGACTGTTAAAGACGTGGGGGGGAAGAAAATGGTTGTGGAGGT
GGAGCCGGCCATGAAGATAGGTGAACTCAAAACTAAGTTGCAAGCAGAGC
AGAACGGAGCGGATCCTGCCCGTCAAAAAATGATTCACAAGGGTAAAGTG
TTGAAGGATGACGACACAATTGAATCGACTGGTGTTACAGAAACTGATTT
TTACGTCTGCATGGTTTCAGCGGCCCCAAAGGTACGTGAAGGATAAGAAG
AGGAGCAGAAAGCTGGAATGTCGGAGCCGTTCTGCTAATTACGGGCCATC
ATCAGATATACTAAAAGCAATCTTACTCAAAATACATGTAGCCTAAAACA
ACGCCTGTTGCTGCTCCAGCTCCAGCAGCTACGACCGCGCCGGCTACTCC
TTCTGTAGGAACAACTCCGGAGACAACAACCACCGGCACGGCAGCTACCC
CGCCCGCTCCTTCTCCAGCCGATGCGGCTCAAGTGGAAGGGTTAGTGTCC
ATGGGCTTCGCCGAGGCAAACGTTCGCGCGGCTTTGGAAGCAACGGGGGG
CAGTCCCGACGCGGCGTATGCCCTGTTGGAGAGCGGAGCTCCTATCCAGC
CTCCTACCCCGGCCGCCACCCCCTCAGCGACAAGCGCGGCCTCCAACTCG
ATCACGTCTCTCGAGGCCTTCCGCGCCCTCCCACAATTCGATCAGCTCCG
CCGCTTGGTCCAATCGAATCCTGGCGCGATCGATCAGGTCCTAGGGTTCA
TCGGGCAGCAGAGCCCACAGCTCCTGCAAGTCATCTTGGCCCAGCAGGAT
GAATTTGTGGCCATGATGAACGAGCCGATTGAAGGCGATACTGCCTCAGG
AGCTCAGCAGTTGCAACAACAGCAACAACCATCGCAGCAGGGGAATCCGT
TTGCCGCTCTCGGGGGCTTGGGCGGCATGGAAGGAGCGGGGGGGGCGGAG
GGGCAGAACGGGCCCTCCCCACAACAGCTCGCTCAGATCCTGCAGGCCAT
GCCGGAGCAGCAGCGGAACCAACTGTTGGCTGCGTTGGTGGGATTGCCTC
CCGAACAGGTGCAGCAGTTCAGCGGGCAGCTGATTGAGGCTCTGGCGAGT
GGAGCGGCGCCGGGATTAGGAGGCATGGGGGGGTTGGCGGGAGCACCTCC
TCCGGGCTCGCAGCGGATTGAGCTGACAGCGGAGGAAGCGGCGAACCTGA
ATCAGTTGGTGGAGATGGGCTTCGAACGGAACGAGGCGCTGCAGGTCTTC
TTGGCCTGTGATAAGAACCTGGAAATGGCAGCGAGCGTCCTCTTTCAAGA
GGCGGAGACGGGGGGGGCGGGCTTTGGGGGCGCTGGGGGGGCTGGTGGGA
GTGGAGGCGATGGCGGGTCCGGCGGCGGCAGCGGCGGCTCGACAGGGGGT
GACACGGGCAGCGGGGATCAGATGTATTGA back to topCoding sequence (CDS) from alignment at CM002464.1:406976..408405- >rna4802 ID=rna4802|Name=rna4802|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002464.1:406976..408405- (Nannochloropsis gaditana)
CCTAAAACAACGCCTGTTGCTGCTCCAGCTCCAGCAGCTACGACCGCGCC
GGCTACTCCTTCTGTAGGAACAACTCCGGAGACAACAACCACCGGCACGG
CAGCTACCCCGCCCGCTCCTTCTCCAGCCGATGCGGCTCAAGTGGAAGGG
TTAGTGTCCATGGGCTTCGCCGAGGCAAACGTTCGCGCGGCTTTGGAAGC
AACGGGGGGCAGTCCCGACGCGGCGTATGCCCTGTTGGAGAGCGGAGCTC
CTATCCAGCCTCCTACCCCGGCCGCCACCCCCTCAGCGACAAGCGCGGCC
TCCAACTCGATCACGTCTCTCGAGGCCTTCCGCGCCCTCCCACAATTCGA
TCAGCTCCGCCGCTTGGTCCAATCGAATCCTGGCGCGATCGATCAGGTCC
TAGGGTTCATCGGGCAGCAGAGCCCACAGCTCCTGCAAGTCATCTTGGCC
CAGCAGGATGAATTTGTGGCCATGATGAACGAGCCGATTGAAGGCGATAC
TGCCTCAGGAGCTCAGCAGTTGCAACAACAGCAACAACCATCGCAGCAGG
GGAATCCGTTTGCCGCTCTCGGGGGCTTGGGCGGCATGGAAGGAGCGGGG
GGGGCGGAGGGGCAGAACGGGCCCTCCCCACAACAGCTCGCTCAGATCCT
GCAGGCCATGCCGGAGCAGCAGCGGAACCAACTGTTGGCTGCGTTGGTGG
GATTGCCTCCCGAACAGGTGCAGCAGTTCAGCGGGCAGCTGATTGAGGCT
CTGGCGAGTGGAGCGGCGCCGGGATTAGGAGGCATGGGGGGGTTGGCGGG
AGCACCTCCTCCGGGCTCGCAGCGGATTGAGCTGACAGCGGAGGAAGCGG
CGAACCTGAATCAGTTGGTGGAGATGGGCTTCGAACGGAACGAGGCGCTG
CAGGTCTTCTTGGCCTGTGATAAGAACCTGGAAATGGCAGCGAGCGTCCT
CTTTCAAGAGGCGGAGACGGGGGGGGCGGGCTTTGGGGGCGCTGGGGGGG
CTGGTGGGAGTGGAGGCGATGGCGGGTCCGGCGGCGGCAGCGGCGGCTCG
ACAGGGGGTGACACGGGCAGCGGGGATCAGATGTATTGAATGAAACTGAC
TGTTAAAGACGTGGGGGGGAAGAAAATGGTTGTGGAGGTGGAGCCGGCCA
TGAAGATAGGTGAACTCAAAACTAAGTTGCAAGCAGAGCAGAACGGAGCG
GATCCTGCCCGTCAAAAAATGATTCACAAGGGTAAAGTGTTGAAGGATGA
CGACACAATTGAATCGACTGGTGTTACAGAAACTGATTTTTACGTCTGCA
TGGTTTCAGCGGCCCCAAAGCCTAAAACAACGCCTGTTGCTGCTCCAGCT
CCAGCAGCTACGACCGCGCCGGCTACTCCTTCTGTAGGAACAACTCCGGA
GACAACAACCACCGGCACGGCAGCTACCCCGCCCGCTCCTTCTCCAGCCG
ATGCGGCTCAAGTGGAAGGGTTAGTGTCCATGGGCTTCGCCGAGGCAAAC
GTTCGCGCGGCTTTGGAAGCAACGGGGGGCAGTCCCGACGCGGCGTATGC
CCTGTTGGAGAGCGGAGCTCCTATCCAGCCTCCTACCCCGGCCGCCACCC
CCTCAGCGACAAGCGCGGCCTCCAACTCGATCACGTCTCTCGAGGCCTTC
CGCGCCCTCCCACAATTCGATCAGCTCCGCCGCTTGGTCCAATCGAATCC
TGGCGCGATCGATCAGGTCCTAGGGTTCATCGGGCAGCAGAGCCCACAGC
TCCTGCAAGTCATCTTGGCCCAGCAGGATGAATTTGTGGCCATGATGAAC
GAGCCGATTGAAGGCGATACTGCCTCAGGAGCTCAGCAGTTGCAACAACA
GCAACAACCATCGCAGCAGGGGAATCCGTTTGCCGCTCTCGGGGGCTTGG
GCGGCATGGAAGGAGCGGGGGGGGCGGAGGGGCAGAACGGGCCCTCCCCA
CAACAGCTCGCTCAGATCCTGCAGGCCATGCCGGAGCAGCAGCGGAACCA
ACTGTTGGCTGCGTTGGTGGGATTGCCTCCCGAACAGGTGCAGCAGTTCA
GCGGGCAGCTGATTGAGGCTCTGGCGAGTGGAGCGGCGCCGGGATTAGGA
GGCATGGGGGGGTTGGCGGGAGCACCTCCTCCGGGCTCGCAGCGGATTGA
GCTGACAGCGGAGGAAGCGGCGAACCTGAATCAGTTGGTGGAGATGGGCT
TCGAACGGAACGAGGCGCTGCAGGTCTTCTTGGCCTGTGATAAGAACCTG
GAAATGGCAGCGAGCGTCCTCTTTCAAGAGGCGGAGACGGGGGGGGCGGG
CTTTGGGGGCGCTGGGGGGGCTGGTGGGAGTGGAGGCGATGGCGGGTCCG
GCGGCGGCAGCGGCGGCTCGACAGGGGGTGACACGGGCAGCGGGGATCAG
ATGTATTGAATGAAACTGACTGTTAAAGACGTGGGGGGGAAGAAAATGGT
TGTGGAGGTGGAGCCGGCCATGAAGATAGGTGAACTCAAAACTAAGTTGC
AAGCAGAGCAGAACGGAGCGGATCCTGCCCGTCAAAAAATGATTCACAAG
GGTAAAGTGTTGAAGGATGACGACACAATTGAATCGACTGGTGTTACAGA
AACTGATTTTTACGTCTGCATGGTTTCAGCGGCCCCAAAG back to top
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