rna4778, rna4778 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4778
Unique Name	rna4778
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1637
Alignment location	CM002464.1:328069..330176 -

Link to JBrowse

Properties


Property Name	Value
Product	chaperone protein dnaj 16
Orig transcript id	gnl\|cribi\|Naga_100048g15.10285.mrna
Orig protein id	gnl\|cribi\|Naga_100048g15.10285
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:328069..330176 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g15	gene4615	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4778	rna4778-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25913.1	cds4766	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:328069..330176-
coding sequence from alignment at CM002464.1:328069..330176-

mRNA sequence

>rna4778 ID=rna4778|Name=rna4778|organism=Nannochloropsis gaditana|type=mRNA|length=1637bp
TTCCTATTTTTTACAAGCACGCCGCGCATACTTGTCAGGACGTTGGTACA
CATACATCTCTTTAAAGCGCCCCGTCTTTTACCACGAGGCACAGGGAAGT
GCTTGGTCCCGTCAGGGAAAGCTTGCAGATGAAGAACAAGATGGTTAAGT
CCGCCTGCCGCATTGTGGCTGCTGCAGTGGCCCTTTCCCCTGCTTTAAGA
AGAAGTTTCGCCTTTCAAATGCCAGCTCAGCCACATCACTTCTTATCGCC
ATCGTTGGTGGTAAGGGATGGCGGGATATTGAAATTGGATCAAGGCTTTT
CAACCGCGCTTCGCAGCGCATCCTTGCCTCCCGACGGGGAGCGTGCTGGG
CTGGGGAGCAGGCGGCGTCAATCTCGTTTCAACAAGGAACCAAAGCAGCC
GGAGGAGCCTAAGAAAGACACAAAATTCTCCAAAGATTCACATTTCTACA
CGGGTGCTATCGGGATTGGCACGTATTCTTGGGGAGATCGTCGCGATGGA
TTTTTCTACGGAGATTACCCGTCCAATGCCATGGAGCGCTCGCAAATGAG
CTGCGGTGCCTTCAATGAACAAGACATCGAGGAGGCTTTTACTTGTCTGG
AAGAAGCCGGCTTGCCCATGTTCGATGCTCGGGAATTGTACCCGTGCGAG
GATTTCTTGGGGGAAATGGTGGCCCATTGGAAGAAGCGGCAACTGAAGCT
CCAGAGTGGGGTCAAGCAAGTCCGGCCTTTCATCGCCACCAGCTACCAGG
CGCGACTGTTCGGGAGGGGGTTGTTGGACGTGCGAGGTGGACGCAGGGCG
GTCCTGAGGGCTCTTGAGCACAGCTTGGAGGCGTTGCAAGCGACCCGCGT
GGACCTGTATCAGGTCACCAAGCCCGGGCCCCTGTACTGGGGGGGGGAGA
AGGCCATTTTCGAGGCCGTCGCCCAGGCAAAACGGATGCGACTGCTCGAT
CACGTCGGGGTGATTGGGTATTTGACTGAGGAGGACCTGCGACGAGCCAA
GGACGTGGCGAAGCAGCACGGGATCAATTTGCGGAGCAATTCCTTTGAAT
TGAGCCTCGCGAACCCTGCGGCTGCCCTGCTGGACGGCACGGTGGCAGCC
TGTGAGAAGCTGGGAATCATGCCGCTGGCCAACAGGCCTTTGGCCGGGGG
CCTGGCGGCGGGGACCTACACGATGATGGACCCGAGCGGAGGGAGGAGTC
GGAAGCCCCGGTATACCTTCCCAGACCTGGAGCCCCTGTATCCGGTCCAC
AAGGCGTTGCGGGAACAGGCAGGGAAGTACACGGAGAAGCTGGGCCGACG
CGTGAACACGGCGCAGGTCTCGATCAATTGGGTCCGGGCGCAGGGCGTGA
TCCCCGTGGTGGGGGTCAAGACGGGTGCGCAAGCCAAGGACATGGTGGAC
GCGGCGGCCTGGGACTTGGAGGCCGAAGATGTCCAGGAACTCAGCCGCGT
CGCCTTGGACACTTACTCGAAGCGGCGGAAGATTACAGAACTTATTGCCA
AGGCGCGACGCTGAGGGAGGACGCAGGGAACAGGGGGGGGAAGGCAGGGG
GAGGGGGAGGCATGTGGCCCTCGCCGTCACAATGAGAGAGATAAAACGTA
CGGGCGCACGCCTGCGAAGAGGCATCAGGGGCTTAAC

protein sequence of rna4778

>rna4778-protein ID=rna4778-protein|Name=rna4778|organism=Nannochloropsis gaditana|type=polypeptide|length=504bp
MADHLRRADRSKQTKNFYTVLGVEKGASINQITKAYRILALRYHPDRNLK
DAPTGEKFKEISTAYAILSDPNKRRRYDLSGGDTSEMFDDSTESLDLENL
NSLQKVVFAIITRFGPNFQTQVNAETLIKAKDLCNDVRAKNRGKEKGKRE
EGQRVVNLKPGFSMVGKTVAQRGNFYRLQLSEADAANGVIVSCCSSSQDR
FKLICFEADGSVRYMQESSPHHEKKDTVADLLLVPFQTITSYGTSENYEI
KKTDPLLFSRLNILTLEARSIQAGEHLLCVYGDNWYTGSSYTITIMRAHL
DPLLVQTMREMDDKLYAKKGEIELLKEQYDRAEAAFEAIKAKVDEESKVT
EALVQEREAAYSRFITSSVRNYGPHLSAGLKGPPTSSTAQAAPSLPLAQG
SHMEALSASTSGGLPVGVSETNKDSKEVVSPAARASADLGEGKNCKSAPG
AGVTRAAERSGNSDKSISGTSPTKRSSFSFLAGFRRGGRGGSIVQQEELQ
ASKA

mRNA from alignment at CM002464.1:328069..330176-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4778 ID=rna4778|Name=rna4778|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp|location=Sequence derived from alignment at CM002464.1:328069..330176- (Nannochloropsis gaditana)
TTTTCCAACAACGATACAGTCGAGGGCGCCGCAGCTTTCATTTTCAACCA
GATTGAATAGATGGCTGACCATCTCCGCCGTGCTGATCGTTCTAAACAGA
CGAAAAACTTCTATACGGTAAGCAAAAACAGATTCGATGCTTGTGTTTGT
AGTGGCACGCGACTGACATGTAAGTGACCTCATTCAGACTCTTATGGGGC
AGCAGGAATATCCTCAGAGCCGATAGCCACGAACGGCGATCAAAAAGCAT
ATATGCGCTTCCTTTTGGAGACTTGACTTCCCCTAATCTCGCCATCCATC
CATGTCTTCAGGTACTAGGGGTCGAGAAAGGCGCGTCAATAAATCAAATC
ACTAAAGCATATCGGATCCTGGCCTTGCGCTATCATCCCGATCGCAACCT
AAAGGATGCCCCGACGGGCGAAAAGTTTAAGGAAATTTCTACAGCGTATG
CAATTTTATCGGATCCAAATAAACGGCGACGCTACGATTTGAGCGGAGGA
GACACGTCAGAAATGTTTGACGACAGCACAGAGAGTCTGGATTTGGAAAA
TTTAAACAGCCTGCAAAAGGTTGTGTTTGCCATTATTACCAGATTTGGTC
CAAATTTTCAGACGCAAGTCAATGCGGAGACATTGATCAAGGCTAAGGAT
TTATGCAACGATGTGCGGGCCAAGAACCGGGGCAAGGAGAAGGGAAAGCG
GGAGGAAGGGCAGCGGGTCGTCAATTTAAAGCCAGGCTTTTCCATGGTCG
GTAAAACAGTTGCGCAGCGAGGAAATTTTTATCGGCTGCAACTATCGGAA
GCAGACGCGGCGAACGGTGTCATTGTCAGCTGTTGCTCCTCCAGTCAAGA
TCGATTCAAGCTGATCTGTTTCGAAGCGGACGGCAGTGTCCGTTACATGC
AGGAAAGCAGCCCGCATCACGAGAAGAAAGACACCGTGGCAGACCTGCTC
TTGGTGCCCTTCCAGACAATCACCTCATACGGGACCAGCGAAAATTATGA
GATAAAGAAAACGGATCCCCTCCTCTTTTCCCGCCTCAATATCCTCACCC
TGGAGGCTCGCTCCATTCAGGCTGGGGAGCATCTGCTCTGCGTGTACGGG
GACAATTGGTACACGGGATCCTCTTACACGATCACCATCATGCGGGCTCA
TCTCGATCCCCTCCTGGTGCAAACGATGAGGGAAATGGACGACAAGCTCT
ACGCCAAAAAGGGCGAAATTGAGCTGCTCAAGGAGCAGTACGATCGTGCC
GAGGCTGCCTTCGAGGCCATTAAGGCCAAAGTGGACGAGGAGAGTAAGGT
TACGGAGGCACTGGTGCAAGAGAGGGAAGCAGCCTACTCTCGGTTCATCA
CTTCATCGGTTCGAAATTATGGACCGCACCTCAGTGCAGGCCTTAAAGGT
CCGCCGACATCCTCGACGGCTCAGGCGGCTCCCTCTCTTCCCTTGGCACA
GGGCTCGCACATGGAGGCCCTGTCAGCTTCCACCTCGGGCGGGCTCCCGG
TGGGGGTCTCTGAGACGAACAAAGACAGCAAGGAAGTGGTGTCTCCAGCA
GCCCGAGCTTCCGCGGATCTAGGCGAAGGGAAGAATTGTAAATCAGCACC
AGGAGCAGGCGTGACCAGAGCGGCAGAAAGATCAGGAAATAGTGATAAAT
CTATCTCCGGCACTAGTCCAACGAAGAGGTCGTCTTTTTCCTTTCTCGCA
GGTTTCAGACGGGGGGGAAGAGGAGGATCAATTGTGCAACAAGAAGAGTT
GCAGGCCTCAAAGGCATAATCTCCAGTAAATGGCTATAGATGGATAGGTT
TCTGCGTATGTACACTGGTAACTAACATTGATTGACCGATCGAGAGACTC
GTAATCCTACGGAGCATTTCGGAGACTACACGGCGATCTTGCTTTTGGCA
AAAGTACTTCTGGGTAACAGACATTTGCTGTGATTTGTGTGACTTTTGCT
TCTTTTTCAAACGTTTGCTTCCACGGGGTTCAAGTGATCGCCTTTTTCCC
CTCTTCGTACAAAGCTTGGGCAGCGCGGTCGGAGAAACGAACCATGTTCA
TCAGCGAAGTGGATCACTCACAAAATCATTACGACAGCATTGAAAAATGC
GAAAATTC

Coding sequence (CDS) from alignment at CM002464.1:328069..330176-

>rna4778 ID=rna4778|Name=rna4778|organism=Nannochloropsis gaditana|type=CDS|length=3030bp|location=Sequence derived from alignment at CM002464.1:328069..330176- (Nannochloropsis gaditana)
GTACTAGGGGTCGAGAAAGGCGCGTCAATAAATCAAATCACTAAAGCATA
TCGGATCCTGGCCTTGCGCTATCATCCCGATCGCAACCTAAAGGATGCCC
CGACGGGCGAAAAGTTTAAGGAAATTTCTACAGCGTATGCAATTTTATCG
GATCCAAATAAACGGCGACGCTACGATTTGAGCGGAGGAGACACGTCAGA
AATGTTTGACGACAGCACAGAGAGTCTGGATTTGGAAAATTTAAACAGCC
TGCAAAAGGTTGTGTTTGCCATTATTACCAGATTTGGTCCAAATTTTCAG
ACGCAAGTCAATGCGGAGACATTGATCAAGGCTAAGGATTTATGCAACGA
TGTGCGGGCCAAGAACCGGGGCAAGGAGAAGGGAAAGCGGGAGGAAGGGC
AGCGGGTCGTCAATTTAAAGCCAGGCTTTTCCATGGTCGGTAAAACAGTT
GCGCAGCGAGGAAATTTTTATCGGCTGCAACTATCGGAAGCAGACGCGGC
GAACGGTGTCATTGTCAGCTGTTGCTCCTCCAGTCAAGATCGATTCAAGC
TGATCTGTTTCGAAGCGGACGGCAGTGTCCGTTACATGCAGGAAAGCAGC
CCGCATCACGAGAAGAAAGACACCGTGGCAGACCTGCTCTTGGTGCCCTT
CCAGACAATCACCTCATACGGGACCAGCGAAAATTATGAGATAAAGAAAA
CGGATCCCCTCCTCTTTTCCCGCCTCAATATCCTCACCCTGGAGGCTCGC
TCCATTCAGGCTGGGGAGCATCTGCTCTGCGTGTACGGGGACAATTGGTA
CACGGGATCCTCTTACACGATCACCATCATGCGGGCTCATCTCGATCCCC
TCCTGGTGCAAACGATGAGGGAAATGGACGACAAGCTCTACGCCAAAAAG
GGCGAAATTGAGCTGCTCAAGGAGCAGTACGATCGTGCCGAGGCTGCCTT
CGAGGCCATTAAGGCCAAAGTGGACGAGGAGAGTAAGGTTACGGAGGCAC
TGGTGCAAGAGAGGGAAGCAGCCTACTCTCGGTTCATCACTTCATCGGTT
CGAAATTATGGACCGCACCTCAGTGCAGGCCTTAAAGGTCCGCCGACATC
CTCGACGGCTCAGGCGGCTCCCTCTCTTCCCTTGGCACAGGGCTCGCACA
TGGAGGCCCTGTCAGCTTCCACCTCGGGCGGGCTCCCGGTGGGGGTCTCT
GAGACGAACAAAGACAGCAAGGAAGTGGTGTCTCCAGCAGCCCGAGCTTC
CGCGGATCTAGGCGAAGGGAAGAATTGTAAATCAGCACCAGGAGCAGGCG
TGACCAGAGCGGCAGAAAGATCAGGAAATAGTGATAAATCTATCTCCGGC
ACTAGTCCAACGAAGAGGTCGTCTTTTTCCTTTCTCGCAGGTTTCAGACG
GGGGGGAAGAGGAGGATCAATTGTGCAACAAGAAGAGTTGCAGGCCTCAA
AGGCATAAATGGCTGACCATCTCCGCCGTGCTGATCGTTCTAAACAGACG
AAAAACTTCTATACGGTACTAGGGGTCGAGAAAGGCGCGTCAATAAATCA
AATCACTAAAGCATATCGGATCCTGGCCTTGCGCTATCATCCCGATCGCA
ACCTAAAGGATGCCCCGACGGGCGAAAAGTTTAAGGAAATTTCTACAGCG
TATGCAATTTTATCGGATCCAAATAAACGGCGACGCTACGATTTGAGCGG
AGGAGACACGTCAGAAATGTTTGACGACAGCACAGAGAGTCTGGATTTGG
AAAATTTAAACAGCCTGCAAAAGGTTGTGTTTGCCATTATTACCAGATTT
GGTCCAAATTTTCAGACGCAAGTCAATGCGGAGACATTGATCAAGGCTAA
GGATTTATGCAACGATGTGCGGGCCAAGAACCGGGGCAAGGAGAAGGGAA
AGCGGGAGGAAGGGCAGCGGGTCGTCAATTTAAAGCCAGGCTTTTCCATG
GTCGGTAAAACAGTTGCGCAGCGAGGAAATTTTTATCGGCTGCAACTATC
GGAAGCAGACGCGGCGAACGGTGTCATTGTCAGCTGTTGCTCCTCCAGTC
AAGATCGATTCAAGCTGATCTGTTTCGAAGCGGACGGCAGTGTCCGTTAC
ATGCAGGAAAGCAGCCCGCATCACGAGAAGAAAGACACCGTGGCAGACCT
GCTCTTGGTGCCCTTCCAGACAATCACCTCATACGGGACCAGCGAAAATT
ATGAGATAAAGAAAACGGATCCCCTCCTCTTTTCCCGCCTCAATATCCTC
ACCCTGGAGGCTCGCTCCATTCAGGCTGGGGAGCATCTGCTCTGCGTGTA
CGGGGACAATTGGTACACGGGATCCTCTTACACGATCACCATCATGCGGG
CTCATCTCGATCCCCTCCTGGTGCAAACGATGAGGGAAATGGACGACAAG
CTCTACGCCAAAAAGGGCGAAATTGAGCTGCTCAAGGAGCAGTACGATCG
TGCCGAGGCTGCCTTCGAGGCCATTAAGGCCAAAGTGGACGAGGAGAGTA
AGGTTACGGAGGCACTGGTGCAAGAGAGGGAAGCAGCCTACTCTCGGTTC
ATCACTTCATCGGTTCGAAATTATGGACCGCACCTCAGTGCAGGCCTTAA
AGGTCCGCCGACATCCTCGACGGCTCAGGCGGCTCCCTCTCTTCCCTTGG
CACAGGGCTCGCACATGGAGGCCCTGTCAGCTTCCACCTCGGGCGGGCTC
CCGGTGGGGGTCTCTGAGACGAACAAAGACAGCAAGGAAGTGGTGTCTCC
AGCAGCCCGAGCTTCCGCGGATCTAGGCGAAGGGAAGAATTGTAAATCAG
CACCAGGAGCAGGCGTGACCAGAGCGGCAGAAAGATCAGGAAATAGTGAT
AAATCTATCTCCGGCACTAGTCCAACGAAGAGGTCGTCTTTTTCCTTTCT
CGCAGGTTTCAGACGGGGGGGAAGAGGAGGATCAATTGTGCAACAAGAAG
AGTTGCAGGCCTCAAAGGCATAAATGGCTGACCATCTCCGCCGTGCTGAT
CGTTCTAAACAGACGAAAAACTTCTATACG

Synonyms

Publications