rna4777, rna4777 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4777
Unique Name	rna4777
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1711
Alignment location	CM002464.1:326094..327901 -

Link to JBrowse

Properties


Property Name	Value
Product	aldo keto reductase
Orig transcript id	gnl\|cribi\|Naga_100048g14.10282.mrna
Orig protein id	gnl\|cribi\|Naga_100048g14.10282
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:326094..327901 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g14	gene4614	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4777	rna4777-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25910.1	cds4765	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:326094..327901-
coding sequence from alignment at CM002464.1:326094..327901-

mRNA sequence

>rna4777 ID=rna4777|Name=rna4777|organism=Nannochloropsis gaditana|type=mRNA|length=1711bp
CTGCCAGTTGAGTGTCTGAAGCATTTGTCGTGAAATGATACAAGCCCGTA
GTAGTACCATCGGGAAGAAACGAGTGCGATCGCCCCGCCCCCTGCTTGTT
CTAGCGAGGGTTTCGAAAAAATCGTCTTTCCTTTTCCTTGCCCCTTGCGC
GCAGGACAGGGTCGACTACAGGGAGCAACACCTGCGTGCTGATATCGGCC
GTGGCTACATGGATTCCACCAATATACATCGTGAAAGGGATCAGATTGAC
CGGGCAAAAGCCCCACTAAAGCATCCGACCTCCCCAGCCTGAGTCCATTC
TTGCTCCCTCCCTCCCTTCCTCCATCCTTTTTTCTCACACACCCTCTCTT
CCTTTCCTTCATCCCTTGCCAGGCACGACTACATGTCGTGGATAAGATCC
ATTGTGCCGCTTTGTTTACTTCTCCTCCTTTGCACGCCAACCCTCCACTC
CGCCTTCGTACTAAACGGTCGACCATGTGTACGGCGCCTCAGTAACTCGG
TTTCACATTCAAAGCCAATCGGTGACTCTATATTCCCACTGAAGGCCACA
ATCCCTCCCAATGATGACGCTGGCTCTTTCAAAAAGAATTCCGGCTCGAG
GGAAGACGGAGTGGACTTCTCAAGCGCATCCGGTCGCGACGTCGACCTCT
CTGTCGGTGTGTGGCCTCGGGAAAACCGGCAATTGCTAGGATTGCTGGGG
GGTTTAGGTTTTCTGGAAACAGCATACTTGACGTACCAAAAGCTAACAAC
CGATGACTTGACCTCTCTATGCACCTCCGTAGCGGGGTTAAGCATGAGGT
GTGGCGATGTGTTGAATTCGGAGTACGCGAGCTTTTTAGGAGTGCCTCTT
ACATTGCCTGGGGCGGTGGCTTACGGGACTGTGACAGCGTTGGCCTTATG
GCCGATCCTTGCCGGGAACGAGGGAAGCCGAGAGCGTGCAGAGGCGGACC
TCAACAGCCGAGCCCCATTGTTAACGGTCACGACGGGCATGGCTACTTTC
AGCGCCTATTTGATGTGGGTTTTGGCCACACAAGTCCGGGAACTCTGCCC
TTACTGCCTGGCGAGCGCCTCTCTCTCGTTTAGCATGGCCGCCTTGACCT
GGGTCAAGCAGGTGGAGCCGAACGCAACCAAATCCTTGGTGTATAAGGCG
GGCGCCGTGGTCGTCACGGGTCTTTTTTCTCTGGGGGCATTCGCCTACGC
GAGCGCAAGGATCATGGTCATGAGCCAGGGACCGGGGGAGGGAGGGGAGG
TGGGAGGGAGTAGGCCCCCGCCCATCACCACGCACTCGACGGCCCGCAGC
GAGGCCTTGGCTCTTCGTCTGCAGGATCTAGACGCCCGCATGTACGGGGC
CTTCTGGTGCTCGCATTGCTACGAGCAAAAGCAGTCTTTGGGCCAAGAAG
CCTACCGGAGAATCGCCTACATTGAATGCGCGCCCGACGGTTTCGCGAGC
GAGTCGAAAATCTGCAAAGCGCGGAAAATTCCTGGATATCCCACCTGGGA
GATCAAGGGAGAGTTGTACCCAGGGGAGAAGAGCTTGGACCAGCTGGAGG
ACATCGTGGACGGGAAAGTGCCAGTGCCCCCGCCCATGGAGATTCCGGCC
AAATGAGAGGCGAGGGGAGGGAGAGGGGGACATGGGGAGGGGAGTCGTGT
ACAAGAAGACATGTGAAACGAAAGTGACGTAAAGAAATTAAGTTAAGCCC
CTGATGCCTCT

protein sequence of rna4777

>rna4777-protein ID=rna4777-protein|Name=rna4777|organism=Nannochloropsis gaditana|type=polypeptide|length=461bp
MKNKMVKSACRIVAAAVALSPALRRSFAFQMPAQPHHFLSPSLVVRDGGI
LKLDQGFSTALRSASLPPDGERAGLGSRRRQSRFNKEPKQPEEPKKDTKF
SKDSHFYTGAIGIGTYSWGDRRDGFFYGDYPSNAMERSQMSCGAFNEQDI
EEAFTCLEEAGLPMFDARELYPCEDFLGEMVAHWKKRQLKLQSGVKQVRP
FIATSYQARLFGRGLLDVRGGRRAVLRALEHSLEALQATRVDLYQVTKPG
PLYWGGEKAIFEAVAQAKRMRLLDHVGVIGYLTEEDLRRAKDVAKQHGIN
LRSNSFELSLANPAAALLDGTVAACEKLGIMPLANRPLAGGLAAGTYTMM
DPSGGRSRKPRYTFPDLEPLYPVHKALREQAGKYTEKLGRRVNTAQVSIN
WVRAQGVIPVVGVKTGAQAKDMVDAAAWDLEAEDVQELSRVALDTYSKRR
KITELIAKARR

mRNA from alignment at CM002464.1:326094..327901-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4777 ID=rna4777|Name=rna4777|organism=Nannochloropsis gaditana|type=mRNA|length=1808bp|location=Sequence derived from alignment at CM002464.1:326094..327901- (Nannochloropsis gaditana)
TTCCTATTTTTTACAAGCACGCCGCGCATACTTGTCAGGACGTTGGTACA
CATACATCTCTTTAAAGCGCCCCGTCTTTTACCACGAGGCACAGGGAAGT
GCTTGGTCCCGTCAGGGAAAGCTTGCAGATGAAGAACAAGATGGTTAAGT
CCGCCTGCCGCATTGTGGCTGCTGCAGTGGCCCTTTCCCCTGCTTTAAGA
AGAAGTTTCGCCTTTCAAATGCCAGCTCAGCCACATCACTTCTTATCGCC
ATCGTTGGTGGTAAGGGATGGCGGGATATTGAAATTGGATCAAGGCTTTT
CAACCGCGCTTCGCAGCGCATCCTTGCCTCCCGACGGGGAGCGTGCTGGG
CTGGGGAGCAGGCGGCGTCAATCTCGTTTCAACAAGGAACCAAAGCAGCC
GGAGGAGCCTAAGAAAGACACAAAATTCTCCAAAGATTCACATTTCTACA
CGGGTGCTATCGGGATTGGCACGTATTCTTGGGGAGATCGTCGCGATGGA
TTTTTCTACGGAGATGTAAGTGGGTAGCTAGGGGAAAAGACCCAAGAATC
ATCGGCGAAAGCAACTCTGTGGAGGAAATCGTCAGAATTGAGAAAGATGG
TAGGGGGAGATTGCGATTTTCCCTCATTCATCGTCTCTGGGATACGTGCG
ATTCAACTCTCTTCTCTGCCCCTCCCATGGCCACAGTACCCGTCCAATGC
CATGGAGCGCTCGCAAATGAGCTGCGGTGCCTTCAATGAACAAGACATCG
AGGAGGCTTTTACTTGTCTGGAAGAAGCCGGCTTGCCCATGTTCGATGCT
CGGGAATTGTACCCGTGCGAGGATTTCTTGGGGGAAATGGTGGCCCATTG
GAAGAAGCGGCAACTGAAGCTCCAGAGTGGGGTCAAGCAAGTCCGGCCTT
TCATCGCCACCAGCTACCAGGCGCGACTGTTCGGGAGGGGGTTGTTGGAC
GTGCGAGGTGGACGCAGGGCGGTCCTGAGGGCTCTTGAGCACAGCTTGGA
GGCGTTGCAAGCGACCCGCGTGGACCTGTATCAGGTCACCAAGCCCGGGC
CCCTGTACTGGGGGGGGGAGAAGGCCATTTTCGAGGCCGTCGCCCAGGCA
AAACGGATGCGACTGCTCGATCACGTCGGGGTGATTGGGTATTTGACTGA
GGAGGACCTGCGACGAGCCAAGGACGTGGCGAAGCAGCACGGGATCAATT
TGCGGAGCAATTCCTTTGAATTGAGCCTCGCGAACCCTGCGGCTGCCCTG
CTGGACGGCACGGTGGCAGCCTGTGAGAAGCTGGGAATCATGCCGCTGGC
CAACAGGCCTTTGGCCGGGGGCCTGGCGGCGGGGACCTACACGATGATGG
ACCCGAGCGGAGGGAGGAGTCGGAAGCCCCGGTATACCTTCCCAGACCTG
GAGCCCCTGTATCCGGTCCACAAGGCGTTGCGGGAACAGGCAGGGAAGTA
CACGGAGAAGCTGGGCCGACGCGTGAACACGGCGCAGGTCTCGATCAATT
GGGTCCGGGCGCAGGGCGTGATCCCCGTGGTGGGGGTCAAGACGGGTGCG
CAAGCCAAGGACATGGTGGACGCGGCGGCCTGGGACTTGGAGGCCGAAGA
TGTCCAGGAACTCAGCCGCGTCGCCTTGGACACTTACTCGAAGCGGCGGA
AGATTACAGAACTTATTGCCAAGGCGCGACGCTGAGGGAGGACGCAGGGA
ACAGGGGGGGGAAGGCAGGGGGAGGGGGAGGCATGTGGCCCTCGCCGTCA
CAATGAGAGAGATAAAACGTACGGGCGCACGCCTGCGAAGAGGCATCAGG
GGCTTAAC

Coding sequence (CDS) from alignment at CM002464.1:326094..327901-

>rna4777 ID=rna4777|Name=rna4777|organism=Nannochloropsis gaditana|type=CDS|length=2772bp|location=Sequence derived from alignment at CM002464.1:326094..327901- (Nannochloropsis gaditana)
TACCCGTCCAATGCCATGGAGCGCTCGCAAATGAGCTGCGGTGCCTTCAA
TGAACAAGACATCGAGGAGGCTTTTACTTGTCTGGAAGAAGCCGGCTTGC
CCATGTTCGATGCTCGGGAATTGTACCCGTGCGAGGATTTCTTGGGGGAA
ATGGTGGCCCATTGGAAGAAGCGGCAACTGAAGCTCCAGAGTGGGGTCAA
GCAAGTCCGGCCTTTCATCGCCACCAGCTACCAGGCGCGACTGTTCGGGA
GGGGGTTGTTGGACGTGCGAGGTGGACGCAGGGCGGTCCTGAGGGCTCTT
GAGCACAGCTTGGAGGCGTTGCAAGCGACCCGCGTGGACCTGTATCAGGT
CACCAAGCCCGGGCCCCTGTACTGGGGGGGGGAGAAGGCCATTTTCGAGG
CCGTCGCCCAGGCAAAACGGATGCGACTGCTCGATCACGTCGGGGTGATT
GGGTATTTGACTGAGGAGGACCTGCGACGAGCCAAGGACGTGGCGAAGCA
GCACGGGATCAATTTGCGGAGCAATTCCTTTGAATTGAGCCTCGCGAACC
CTGCGGCTGCCCTGCTGGACGGCACGGTGGCAGCCTGTGAGAAGCTGGGA
ATCATGCCGCTGGCCAACAGGCCTTTGGCCGGGGGCCTGGCGGCGGGGAC
CTACACGATGATGGACCCGAGCGGAGGGAGGAGTCGGAAGCCCCGGTATA
CCTTCCCAGACCTGGAGCCCCTGTATCCGGTCCACAAGGCGTTGCGGGAA
CAGGCAGGGAAGTACACGGAGAAGCTGGGCCGACGCGTGAACACGGCGCA
GGTCTCGATCAATTGGGTCCGGGCGCAGGGCGTGATCCCCGTGGTGGGGG
TCAAGACGGGTGCGCAAGCCAAGGACATGGTGGACGCGGCGGCCTGGGAC
TTGGAGGCCGAAGATGTCCAGGAACTCAGCCGCGTCGCCTTGGACACTTA
CTCGAAGCGGCGGAAGATTACAGAACTTATTGCCAAGGCGCGACGCTGAA
TGAAGAACAAGATGGTTAAGTCCGCCTGCCGCATTGTGGCTGCTGCAGTG
GCCCTTTCCCCTGCTTTAAGAAGAAGTTTCGCCTTTCAAATGCCAGCTCA
GCCACATCACTTCTTATCGCCATCGTTGGTGGTAAGGGATGGCGGGATAT
TGAAATTGGATCAAGGCTTTTCAACCGCGCTTCGCAGCGCATCCTTGCCT
CCCGACGGGGAGCGTGCTGGGCTGGGGAGCAGGCGGCGTCAATCTCGTTT
CAACAAGGAACCAAAGCAGCCGGAGGAGCCTAAGAAAGACACAAAATTCT
CCAAAGATTCACATTTCTACACGGGTGCTATCGGGATTGGCACGTATTCT
TGGGGAGATCGTCGCGATGGATTTTTCTACGGAGATTACCCGTCCAATGC
CATGGAGCGCTCGCAAATGAGCTGCGGTGCCTTCAATGAACAAGACATCG
AGGAGGCTTTTACTTGTCTGGAAGAAGCCGGCTTGCCCATGTTCGATGCT
CGGGAATTGTACCCGTGCGAGGATTTCTTGGGGGAAATGGTGGCCCATTG
GAAGAAGCGGCAACTGAAGCTCCAGAGTGGGGTCAAGCAAGTCCGGCCTT
TCATCGCCACCAGCTACCAGGCGCGACTGTTCGGGAGGGGGTTGTTGGAC
GTGCGAGGTGGACGCAGGGCGGTCCTGAGGGCTCTTGAGCACAGCTTGGA
GGCGTTGCAAGCGACCCGCGTGGACCTGTATCAGGTCACCAAGCCCGGGC
CCCTGTACTGGGGGGGGGAGAAGGCCATTTTCGAGGCCGTCGCCCAGGCA
AAACGGATGCGACTGCTCGATCACGTCGGGGTGATTGGGTATTTGACTGA
GGAGGACCTGCGACGAGCCAAGGACGTGGCGAAGCAGCACGGGATCAATT
TGCGGAGCAATTCCTTTGAATTGAGCCTCGCGAACCCTGCGGCTGCCCTG
CTGGACGGCACGGTGGCAGCCTGTGAGAAGCTGGGAATCATGCCGCTGGC
CAACAGGCCTTTGGCCGGGGGCCTGGCGGCGGGGACCTACACGATGATGG
ACCCGAGCGGAGGGAGGAGTCGGAAGCCCCGGTATACCTTCCCAGACCTG
GAGCCCCTGTATCCGGTCCACAAGGCGTTGCGGGAACAGGCAGGGAAGTA
CACGGAGAAGCTGGGCCGACGCGTGAACACGGCGCAGGTCTCGATCAATT
GGGTCCGGGCGCAGGGCGTGATCCCCGTGGTGGGGGTCAAGACGGGTGCG
CAAGCCAAGGACATGGTGGACGCGGCGGCCTGGGACTTGGAGGCCGAAGA
TGTCCAGGAACTCAGCCGCGTCGCCTTGGACACTTACTCGAAGCGGCGGA
AGATTACAGAACTTATTGCCAAGGCGCGACGCTGAATGAAGAACAAGATG
GTTAAGTCCGCCTGCCGCATTGTGGCTGCTGCAGTGGCCCTTTCCCCTGC
TTTAAGAAGAAGTTTCGCCTTTCAAATGCCAGCTCAGCCACATCACTTCT
TATCGCCATCGTTGGTGGTAAGGGATGGCGGGATATTGAAATTGGATCAA
GGCTTTTCAACCGCGCTTCGCAGCGCATCCTTGCCTCCCGACGGGGAGCG
TGCTGGGCTGGGGAGCAGGCGGCGTCAATCTCGTTTCAACAAGGAACCAA
AGCAGCCGGAGGAGCCTAAGAAAGACACAAAATTCTCCAAAGATTCACAT
TTCTACACGGGTGCTATCGGGATTGGCACGTATTCTTGGGGAGATCGTCG
CGATGGATTTTTCTACGGAGAT

Synonyms

Publications