rna4776, rna4776 (mRNA) Nannochloropsis gaditana

Overview
Namerna4776
Unique Namerna4776
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1149
Alignment locationCM002464.1:324403..326113 +

Link to JBrowse

Properties
Property NameValue
ProductVitamin K epoxide reductase
Orig transcript idgnl|cribi|Naga_100048g13.10287.mrna
Orig protein idgnl|cribi|Naga_100048g13.10287
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:324403..326113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100048g13gene4613Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4776rna4776-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25915.1cds4764Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4776 ID=rna4776|Name=rna4776|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
ATGAGCCCCACGGTTCATTCACACCTGCAAGATGCCAAACCTCTTCCTTC
CAACACAGTCGCGCGTCGCCTGTCCCCGGCTGTGCTCAGACAGAAAATTG
AGAAGGACTACAAGGCTGCCTATTTTCTGACAGGAGACATCAGTACTGAT
GCATACGATGAAAATTGTCTTTTCACAGACCCCACCCTGTCTTTTTCGGG
CTTGGACACCTGGAGTCGCAACATAAACAACCTGAAGATATTCTTCCGGG
ATCCTCGCTTAGAACTACGCGAGATACGACTGGACACCACTTCCCGGACG
GTAAACACCCAATGGCGCCTCACCTGTGAGATTGCATTGCCTTGGCGCCC
CTTCATCGACGTGGAAGGGGCCACGGTCCATCGCTACGACCCTAGCAAGG
GTGGGCGCGTGGTGGAGCATACAGAGTACTGGGCGGTTTCGGGCTTCCAG
GCACTCCTGCAACTTTTCAAGCCTGGCAAGGGCCGCCCCATGGACGCATC
CTCCGCTTCCTCCACTGCTCAATTCCAGGCGGGTGTCCGTCTTCTCGCGA
GTACCGTGTTGCCCATCTCGTTATCCCTCTTGTCCGCGTCCTCTCTCCCT
TCCTCCCCTGCTTCCACCCTCCGCTCCGCATTTGTGGCCCGCGCAGCTTC
AGACGAGCGCCGCCAAGTCGCAGACATTCCCGCTTCGGGACTTATATTCA
AAGACAGCATCAATGTCGAGGCTTTTCAAGACCCCAAGGTCCAGGGCGTC
ACCTTGTACATCAGCGATTTCCGGCGCCCTTTGACCGAGCGGCTTGCCAA
AGACTTCTTCAGCGACCCCTCCCAGGCCTCGGTGGCCTGTGTTAGGACGG
GCCCGGTCACTATGAAAAATATTGATCTTTCCAAACAAGGAGAAGAAGTT
TTTAGTGAGGCCCGGTCTTTGCTTTTCAAAACCATCCGCGTCCGGCGAGT
GTACGACAAGGAGTCAAAGGCTTTGATCTACATTTCATATTCAACACGCT
TTAGCAAAAGTGATGATGACAACAAGAGTCGTTTCAAGTCTTCGCTCTGC
GCAATTCCCGTGGAGGACGTGGACGCTCAGGGGCAAAGGCAATTCAGGTA
TCGACCATTTTTAAAGTATCCAGACGAAAAATACAAAAACATGCGCTAA
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protein sequence of rna4776

>rna4776-protein ID=rna4776-protein|Name=rna4776|organism=Nannochloropsis gaditana|type=polypeptide|length=407bp
MSWIRSIVPLCLLLLLCTPTLHSAFVLNGRPCVRRLSNSVSHSKPIGDSI
FPLKATIPPNDDAGSFKKNSGSREDGVDFSSASGRDVDLSVGVWPRENRQ
LLGLLGGLGFLETAYLTYQKLTTDDLTSLCTSVAGLSMRCGDVLNSEYAS
FLGVPLTLPGAVAYGTVTALALWPILAGNEGSRERAEADLNSRAPLLTVT
TGMATFSAYLMWVLATQVRELCPYCLASASLSFSMAALTWVKQVEPNATK
SLVYKAGAVVVTGLFSLGAFAYASARIMVMSQGPGEGGEVGGSRPPPITT
HSTARSEALALRLQDLDARMYGAFWCSHCYEQKQSLGQEAYRRIAYIECA
PDGFASESKICKARKIPGYPTWEIKGELYPGEKSLDQLEDIVDGKVPVPP
PMEIPAK
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mRNA from alignment at CM002464.1:324403..326113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4776 ID=rna4776|Name=rna4776|organism=Nannochloropsis gaditana|type=mRNA|length=1711bp|location=Sequence derived from alignment at CM002464.1:324403..326113+ (Nannochloropsis gaditana)
CTGCCAGTTGAGTGTCTGAAGCATTTGTCGTGAAATGATACAAGCCCGTA
GTAGTACCATCGGGAAGAAACGAGTGCgatcgccccgccccctgctTGTT
CTAGCGAGGGTTTCGAAAAAAtcgtctttccttttccttgcccctTGCGC
GCAGGACAGGGTCGACTACAGGGAGCAACACCTGCGTGCTGATATCGGCC
GTGGCTACATGGATTCCACCAATATACATCGTGAAAGGGATCAGATTGAC
CGGGCAAAAGCCCCACTAAAGCATCCGACCTCCCCAGCCTGAGTCCattc
ttgctccctccctcccttcctccatccttttttCTCACacaccctctctt
cctttccttcatccCTTGCCAGGCACGACTACATGTCGTGGATAAGATCC
ATTGTGCCGCTTTGTTtacttctcctcctttgcacGCCAACCCTCCACTC
CGCCTTCGTACTAAACGGTCGACCATGTGTACGGCGCCTCAGTAACTCGG
TTTCACATTCAAAGCCAATCGGTGACTCTATATTCCCACTGAAGGCCACA
ATCCCTCCCAATGATGACGCTGGCTCTTTCAAAAAGAATTCCGGCTCGAG
GGAAGACGGAGTGGACTTCTCAAGCGCATCCGGTCGCGACGTCGACCTCT
CTGTCGGTGTGTGGCCTCGGGAAAACCGGCAATTGCTAGGATTGCTGGGG
GGTTTAGGTTTTCTGGAAACAGCATACTTGACGTACCAAAAGCTAACAAC
CGATGACTTGACCTCTCTATGCACCTCCGTAGCGGGGTTAAGCATGAGGT
GTGGCGATGTGTTGAATTCGGAGTACGCGAGCTTTTTAGGAGTGCCTCTT
ACATTGCCTGGGGCGGTGGCTTACGGGACTGTGACAGCGTTGGCCTTATG
GCCGATCCTTGCCGGGAACGAGGGAAGCCGAGAGCGTGCAGAGGCGGACC
TCAACAGCCGAGCCCCATTGTTAACGGTCACGACGGGCATGGCTACTTTC
AGCGCCTATTTGATGTGGGTTTTGGCCACACAAGTCCGGGAACTCTGCCC
TTACTGCCTGGCGAGCGCCTCTCTCTCGTTTAGCATGGCCGCCTTGACCT
GGGTCAAGCAGGTGGAGCCGAACGCAACCAAATCCTTGGTGTATAAGGCG
GGCGCCGTGGTCGTCACGGGTCTTTTTTCTCTGGGGGCATTCGCCTACGC
GAGCGCAAGGATCATGGTCATGAGCcagggaccgggggagggaggggagg
tgggagggagtaGGCCCCCGCCCATCACCACGCACTCGACGGCCCGCAGC
GAGGCCTTGGCTCTTCGTCTGCAGGATCTAGACGCCCGCATGTACGGGGC
CTTCTGGTGCTCGCATTGCTACGAGCAAAAGCAGTCTTTGGGCCAAGAAG
CCTACCGGAGAATCGCCTACATTGAATGCGCGCCCGACGGTTTCGCGAGC
GAGTCGAAAATCTGCAAAGCGCGGAAAATTCCTGGATATCCCACCTGGGA
GATCAAGGGAGAGTTGTACCCAGGGGAGAAGAGCTTGGACCAGCTGGAGG
ACATCGTGGACGGGAAAGTGCCAGTGCCCCCGCCCATGGAGATTCCGGCC
AAATGagaggcgaggggagggagagggggacatggggaggggagtcgTGT
ACAAGAAGACATGTGAAACGAAAGTGACGTAAAGAAATTAAGTTAAGCCC
CTGATGCCTCT
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Coding sequence (CDS) from alignment at CM002464.1:324403..326113+

>rna4776 ID=rna4776|Name=rna4776|organism=Nannochloropsis gaditana|type=CDS|length=1224bp|location=Sequence derived from alignment at CM002464.1:324403..326113+ (Nannochloropsis gaditana)
ATGTCGTGGATAAGATCCATTGTGCCGCTTTGTTtacttctcctcctttg
cacGCCAACCCTCCACTCCGCCTTCGTACTAAACGGTCGACCATGTGTAC
GGCGCCTCAGTAACTCGGTTTCACATTCAAAGCCAATCGGTGACTCTATA
TTCCCACTGAAGGCCACAATCCCTCCCAATGATGACGCTGGCTCTTTCAA
AAAGAATTCCGGCTCGAGGGAAGACGGAGTGGACTTCTCAAGCGCATCCG
GTCGCGACGTCGACCTCTCTGTCGGTGTGTGGCCTCGGGAAAACCGGCAA
TTGCTAGGATTGCTGGGGGGTTTAGGTTTTCTGGAAACAGCATACTTGAC
GTACCAAAAGCTAACAACCGATGACTTGACCTCTCTATGCACCTCCGTAG
CGGGGTTAAGCATGAGGTGTGGCGATGTGTTGAATTCGGAGTACGCGAGC
TTTTTAGGAGTGCCTCTTACATTGCCTGGGGCGGTGGCTTACGGGACTGT
GACAGCGTTGGCCTTATGGCCGATCCTTGCCGGGAACGAGGGAAGCCGAG
AGCGTGCAGAGGCGGACCTCAACAGCCGAGCCCCATTGTTAACGGTCACG
ACGGGCATGGCTACTTTCAGCGCCTATTTGATGTGGGTTTTGGCCACACA
AGTCCGGGAACTCTGCCCTTACTGCCTGGCGAGCGCCTCTCTCTCGTTTA
GCATGGCCGCCTTGACCTGGGTCAAGCAGGTGGAGCCGAACGCAACCAAA
TCCTTGGTGTATAAGGCGGGCGCCGTGGTCGTCACGGGTCTTTTTTCTCT
GGGGGCATTCGCCTACGCGAGCGCAAGGATCATGGTCATGAGCcagggac
cgggggagggaggggaggtgggagggagtaGGCCCCCGCCCATCACCACG
CACTCGACGGCCCGCAGCGAGGCCTTGGCTCTTCGTCTGCAGGATCTAGA
CGCCCGCATGTACGGGGCCTTCTGGTGCTCGCATTGCTACGAGCAAAAGC
AGTCTTTGGGCCAAGAAGCCTACCGGAGAATCGCCTACATTGAATGCGCG
CCCGACGGTTTCGCGAGCGAGTCGAAAATCTGCAAAGCGCGGAAAATTCC
TGGATATCCCACCTGGGAGATCAAGGGAGAGTTGTACCCAGGGGAGAAGA
GCTTGGACCAGCTGGAGGACATCGTGGACGGGAAAGTGCCAGTGCCCCCG
CCCATGGAGATTCCGGCCAAATGa
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Synonyms
Publications