rna4766, rna4766 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4766
Unique Name	rna4766
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1165
Alignment location	CM002464.1:291455..294085 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100048g1.10264.mrna
Orig protein id	gnl\|cribi\|Naga_100048g1.10264
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:291455..294085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g1	gene4603	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4766	rna4766-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25892.1	cds4754	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:291455..294085+
coding sequence from alignment at CM002464.1:291455..294085+

mRNA sequence

>rna4766 ID=rna4766|Name=rna4766|organism=Nannochloropsis gaditana|type=mRNA|length=1165bp
ATGGCGCCTGGGTGCCGGGCTGAGAGGGCAATTGGGGAAAGCGGAGGGAA
GGGGGGAGAGGAGGGGGGGGAGGACGGGGGGGAGGAAAGGAAGGGTGGAC
CGGGCATCGAAGCTCTCCTTCGCGCGCAGCAGCAGCACATCGAGCGGCTT
CAGCGGAAGGTGGAGGCCTTGGAGGCCCGCCTTTCGAAGGTTCAGGAGAG
TGGGGAGGTTGAGGGCGACCAGCGCGACTCAGGTCAGGAAGCGTCATGGG
AGGAAGATTCCGGCGCCTGGGAGTTCCCTCTCCCTGCGCAGTCAGAGGCC
TCTCCCGCCCCTCCCCCTGACTCCGGATGTCATCCTTCCGAGGCCGGTTC
CCAGGAGCCATTCAAGGACTCGAGGGTGGATACAAGACCGTTGGATCCCC
TCCATGAGGGTCACTGCGAACACGCGATCGGTGGGGAGGGAGAATGTTTG
CAGTCGCGGGAAGGAGGGGAGGGCAAGAGTGTGAAACGGGGAGGTCCGGG
GCGGGAGGAGGAGATTGTACCTCCTCTTGCGTCGGGAAACGCAGCCGGTC
CTGGAGTTCTCCGGAAGGTAAATGCACCGGTCGAGAAAAATGCTGTCCTT
TTATCAGGAACACCAGCGACAGATGCAGGGACAGAAGCCGCTGGGCACGC
CTCTGTACCCGACAGACTGGCAAATGCTGCCGTTCGCTTGTTCCCTCGCA
TGGTGGTGCCTAGTATCATCTTCACGCCTCAAGGACGTGCGGGCGCTGCC
ACGTTGTCAGGAGTGACGGGAGATGGGCCAAGCGGGCCCAAAGGTATAGG
CGAAGAGGAGGAAGAGGAAGAGGAAGACTATGATTTAGAAAGTCCTTCCG
TGCTCCTGATTGAGCAACGGTACCTCGGGTCGCAGGGAGCCTACGCTTGA
TTAGTTTCTATTTAAGTATCGACATACACAAAGAAACGTTAGTGGTAGAA
GTGGTGGTCACGGGAGCGCTATGGCCAATGCACAGAAGTGAGGTCGCGCC
TTAACGTTGAAAATTCTGCCGTATGCGCCCTTCACGGACCTTTCTGCTTG
ACAAAAGTTTTGTCGACGGACCCCCTGCAAGCGTGCTAGTCGTTTAATGC
TCACGCTCGATTTTAAGCGTGGAAAGCAATCGAATATAACAAAGTATATA
TCAATGTGATTCAGA

protein sequence of rna4766

>rna4766-protein ID=rna4766-protein|Name=rna4766|organism=Nannochloropsis gaditana|type=polypeptide|length=791bp
MRGEEEAAASASAKAAVWRETLEATRHELRRERSEKEAALRSLDEEREAL
RQERGAWRQGERGAWAELTALRDQVATEQRAKDALLLDMADIRRHGKQQL
RELLGELKEFDRVVERNFAELFEAAASAAEAQDVPINTPLKDLLAAEEDA
SRRRGLLRLGGISDPSPTKQLALALEEERGEGGLPGGRGGEGTLGESRRG
SHALVASGVTSLSMPASGKLMVRQAQDLVRKWRLKLEVLPSFNQRFRDAI
ARAGVAFESRLAHMTERLASQGNQVQDAYDKLERLQASRRDTEEDNAREV
ARVKRRVQSEYQELLAEVTAEKNALTARVARMEVERTVAVEEAKAAGKEE
AAAQHGQELLEKEKGLQAAKEEVVQWTGRWKAETEGRERVEKELKALAGE
KREIQTELDRLLRQLQYRDDVIAVLKEALDSHGLGESRQITAQLALLERH
MSKVDGEGRKECGRGGQRVVSLIKEGMEHAAAHLMTVGASQGWETGELLR
RADELQRYGFEVAALVTSTKQMLEELKSWNAQCQGPDIADCRSGGGKHLV
EKLLEDNARLARLLRELHQDLQHLVQRVRVSSPRPGTNRGASSFSARSNP
APVGNFGSPLRRAAQEALPHASPSLDRLKLAAHCSKSSGGVGVGCSNREA
NSNHEFLRRGHIENQDIYLQSSRSLHSRGESMTGPFRMYSGHSETGHVAQ
SSLDTSLAEASDQGNGAKGQGVLARHQIERRGQASGSKPLANLEKISNDL
QEIAAKLEHFKSGVKLPGTTLASSPEQGKRTHTRRSRREVP

mRNA from alignment at CM002464.1:291455..294085+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4766 ID=rna4766|Name=rna4766|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp|location=Sequence derived from alignment at CM002464.1:291455..294085+ (Nannochloropsis gaditana)
atgcgaggggaggaagaggccgcgGCCTCTGCATCGGCCAAAGCAGCCGT
GTGGAGGGAGACCCTGGAGGCGACTCGCCACGAGCTTCGGCGCGAACGCT
CcgaaaaggaggcggccttACGTTCTCTGGACGAAGAGCGAGAAGCACTG
CGGCAAGAGAGGGGCGCCTGgcggcaaggagagaggggggcatgGGCGGA
GCTCACGGCGCTCCGCGACCAAGTCGCCACCGAGCAACGGGCGAAGGACG
CGTTGCTCTTGGACATGGCAGATATCCGGCGCCACGGGAAACAGCAATTG
CGCGAGCTTTTGGGGGAGCTGAAAGAATTTGACCGGGTCGTGGAGAGGAA
TTTTGCGGAGCTCTTTGAGGCGGCGGCAAGTGCTGCCGAGGCCCAGGACG
TACCGATCAATACTCCGTTGAAAGACCTGCTCgctgcggaggaagacgca
agCCGTCGGCGGGGGCTCTTGCGCTTAGGCGGCATCAGCGACCCATCGCC
GACGAAACAACTGGCcttggccttggaggaggaacggggggaaggtggtt
tgccggggggaagggggggggagggaacccTGGGGGAGAGTCGAAGGGGT
AGCCACGCGCTCGTCGCCTCTGGCGTGACCTCCTTGAGCATGCCAGCCAG
CGGCAAATTGATGGTTCGACAGGCGCAGGATTTGGTCCGGAAGTGGAGGC
TCAAATTGGAagttcttccctcctttaaTCAACGTTTCCGGGATGCCATT
GCCCGTGCCGGCGTCGCGTTCGAGAGCCGACTCGCGCACATGACCGAGCG
CTTGGCCAGCCAGGGGAACCAAGTCCAGGACGCGTACGATAAATTGGAAA
GGCTCCAAGCAAGCAGAAGAGATACTGAAGAGGATAATGCCCGGGAAGTT
GCCCGGGTCAAGCGGCGGGTGCAATCGGAGTACCAGGAATTGCTCGCAGA
GGTGACGGCGGAGAAAAATGCCTTGACCGCACGAGTGGCTcggatggagg
tggaaaggacagtggcagtggaggaggcaaaggcggctgggaaagaagag
gcggccgcTCAGCACGGACAAGAATTActtgagaaggagaagggtcTGCA
GGCTGCAAAAGAGGAGGTTGTTCAGTGGaccgggcggtggaaggcggaaa
cggaggggagggagcgcgtgGAAAAAGAATTAAAGGCCTTGGCTGGAGAA
AAACGAGAAATTCAGACGGAGTTGGATAGGCTGCTGCGTCAGCTGCAGTA
CCGGGACGACGTCATCGCCGTCCTGAAAGAGGCGTTGGACAGCCACGGCT
TGGGAGAGTCGCGGCAGATCACTGCCCAGCTTGCCTTACTTGAAAGGCAC
ATGTCCAaggtggacggagagggcAGAAAGGAGTGTGGACGCGGGGGACA
GCGGGTGGTGTCGCTcatcaaggagggaatggagcaTGCTGCGGCGCACT
TGATGACGGTAGGCGCCTCGCAAGGGTGGGAGACTGGCGAGCTTCTGCGA
CGTGCCGACGAGCTTCAGCGTTACGGCTTTGAAGTTGCGGCCTTGGTAAC
TAGCACAAAGCagatgctggaggagctcAAATCGTGGAATGCACAGTGCC
AGGGGCCAGATATAGCCGATTGCAggagtggtggagggaagcacTTGGTA
GAGAAGCTGCTGGAGGACAACGCCCGtcttgcccgcctcctccgtgagcT
TCATCAGGACCTGCAGCATCTTGTGCAGCGAGTCCgcgtttcctctcccc
gtcctgggACGAACCGCGGCGCCAGTAGTTTCTCAGCGAGGTCCAATCCG
GCCCCCGTAGGCAACTTTGGTAGTCCCCTGCGTCGAGCTGCCCAAGAAGC
GTTGCCAcatgcctctccttcccttgatCGTCTCAAACTTGCCGCCCATT
GCAGCAAGAGCAGTGGTGGCGTTGGGGTTGGGTGCAGTAATCGTGAGGCG
AACAGCAACCACGAATTCCTTCGGCGTGGGCACATCGAAAACCAGGACAT
ATATTTACAATCAAGTCGATCGCTTCATAGTCGGGGGGAGAGCATGACCG
GACCGTTCAGAATGTATTCAGGACACTCAGAAACTGGACATGTCGCGCAG
AGTAGCCTTGATACAAGTTTGGCGGAGGCCAGTGATCAAGGAAATGGAGC
GAAAGGGCAGGGCGTTTTGGCACGGCATCAGATCGAGAGGCGGGGCCAGG
CGAGTGGATCAAAGCCTCTGGCGAACTTGGAAAAGATATCGAATGACTTA
CAAGAGATTGCTGCCAAGCTTGAGCACTTCAAATCCGGAGTAAAACTCCC
CGGTACAACACTAGCCTCAAGTCCTGAGCAAGGTAAACGAACGCACACCC
GTCGGTCAAGAAGGGAAGTACCGTAAAAACTTGAAAACAAAAGAGCTGGT
CGCCAAAAAATGACGCCGAGATGATTTTATGTGTTATGTAATTCTATGTC
TAAGGCACGAGGGGTATGCGGAAggactggaagaggaggacaaagcgTGT
TTGTTTTTGTGCATATCGCTTAACTTGTCATTCGTCGTTGCTTAACAACA
GTAAATTGAGTCCTGCGACTAAGCATTTGACGATAAACCGGGAAAGTATG
AATAGAAGGCAAAGATATGAGCCTACACAGC

Coding sequence (CDS) from alignment at CM002464.1:291455..294085+

>rna4766 ID=rna4766|Name=rna4766|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002464.1:291455..294085+ (Nannochloropsis gaditana)
atgcgaggggaggaagaggccgcgGCCTCTGCATCGGCCAAAGCAGCCGT
GTGGAGGGAGACCCTGGAGGCGACTCGCCACGAGCTTCGGCGCGAACGCT
CcgaaaaggaggcggccttACGTTCTCTGGACGAAGAGCGAGAAGCACTG
CGGCAAGAGAGGGGCGCCTGgcggcaaggagagaggggggcatgGGCGGA
GCTCACGGCGCTCCGCGACCAAGTCGCCACCGAGCAACGGGCGAAGGACG
CGTTGCTCTTGGACATGGCAGATATCCGGCGCCACGGGAAACAGCAATTG
CGCGAGCTTTTGGGGGAGCTGAAAGAATTTGACCGGGTCGTGGAGAGGAA
TTTTGCGGAGCTCTTTGAGGCGGCGGCAAGTGCTGCCGAGGCCCAGGACG
TACCGATCAATACTCCGTTGAAAGACCTGCTCgctgcggaggaagacgca
agCCGTCGGCGGGGGCTCTTGCGCTTAGGCGGCATCAGCGACCCATCGCC
GACGAAACAACTGGCcttggccttggaggaggaacggggggaaggtggtt
tgccggggggaagggggggggagggaacccTGGGGGAGAGTCGAAGGGGT
AGCCACGCGCTCGTCGCCTCTGGCGTGACCTCCTTGAGCATGCCAGCCAG
CGGCAAATTGATGGTTCGACAGGCGCAGGATTTGGTCCGGAAGTGGAGGC
TCAAATTGGAagttcttccctcctttaaTCAACGTTTCCGGGATGCCATT
GCCCGTGCCGGCGTCGCGTTCGAGAGCCGACTCGCGCACATGACCGAGCG
CTTGGCCAGCCAGGGGAACCAAGTCCAGGACGCGTACGATAAATTGGAAA
GGCTCCAAGCAAGCAGAAGAGATACTGAAGAGGATAATGCCCGGGAAGTT
GCCCGGGTCAAGCGGCGGGTGCAATCGGAGTACCAGGAATTGCTCGCAGA
GGTGACGGCGGAGAAAAATGCCTTGACCGCACGAGTGGCTcggatggagg
tggaaaggacagtggcagtggaggaggcaaaggcggctgggaaagaagag
gcggccgcTCAGCACGGACAAGAATTActtgagaaggagaagggtcTGCA
GGCTGCAAAAGAGGAGGTTGTTCAGTGGaccgggcggtggaaggcggaaa
cggaggggagggagcgcgtgGAAAAAGAATTAAAGGCCTTGGCTGGAGAA
AAACGAGAAATTCAGACGGAGTTGGATAGGCTGCTGCGTCAGCTGCAGTA
CCGGGACGACGTCATCGCCGTCCTGAAAGAGGCGTTGGACAGCCACGGCT
TGGGAGAGTCGCGGCAGATCACTGCCCAGCTTGCCTTACTTGAAAGGCAC
ATGTCCAaggtggacggagagggcAGAAAGGAGTGTGGACGCGGGGGACA
GCGGGTGGTGTCGCTcatcaaggagggaatggagcaTGCTGCGGCGCACT
TGATGACGGTAGGCGCCTCGCAAGGGTGGGAGACTGGCGAGCTTCTGCGA
CGTGCCGACGAGCTTCAGCGTTACGGCTTTGAAGTTGCGGCCTTGGTAAC
TAGCACAAAGCagatgctggaggagctcAAATCGTGGAATGCACAGTGCC
AGGGGCCAGATATAGCCGATTGCAggagtggtggagggaagcacTTGGTA
GAGAAGCTGCTGGAGGACAACGCCCGtcttgcccgcctcctccgtgagcT
TCATCAGGACCTGCAGCATCTTGTGCAGCGAGTCCgcgtttcctctcccc
gtcctgggACGAACCGCGGCGCCAGTAGTTTCTCAGCGAGGTCCAATCCG
GCCCCCGTAGGCAACTTTGGTAGTCCCCTGCGTCGAGCTGCCCAAGAAGC
GTTGCCAcatgcctctccttcccttgatCGTCTCAAACTTGCCGCCCATT
GCAGCAAGAGCAGTGGTGGCGTTGGGGTTGGGTGCAGTAATCGTGAGGCG
AACAGCAACCACGAATTCCTTCGGCGTGGGCACATCGAAAACCAGGACAT
ATATTTACAATCAAGTCGATCGCTTCATAGTCGGGGGGAGAGCATGACCG
GACCGTTCAGAATGTATTCAGGACACTCAGAAACTGGACATGTCGCGCAG
AGTAGCCTTGATACAAGTTTGGCGGAGGCCAGTGATCAAGGAAATGGAGC
GAAAGGGCAGGGCGTTTTGGCACGGCATCAGATCGAGAGGCGGGGCCAGG
CGAGTGGATCAAAGCCTCTGGCGAACTTGGAAAAGATATCGAATGACTTA
CAAGAGATTGCTGCCAAGCTTGAGCACTTCAAATCCGGAGTAAAACTCCC
CGGTACAACACTAGCCTCAAGTCCTGAGCAAGGTAAACGAACGCACACCC
GTCGGTCAAGAAGGGAAGTACCGTAA

Synonyms

Publications