rna4752, rna4752 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4752
Unique Name	rna4752
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	939
Alignment location	CM002464.1:253159..255660 -

Link to JBrowse

Properties


Property Name	Value
Product	serine threonine-protein kinase 4
Orig transcript id	gnl\|cribi\|Naga_100134g5.9885.mrna
Orig protein id	gnl\|cribi\|Naga_100134g5.9885
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:253159..255660 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100134g5	gene4589	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25926.1	cds4740	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4752	rna4752-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:253159..255660-
coding sequence from alignment at CM002464.1:253159..255660-

mRNA sequence

>rna4752 ID=rna4752|Name=rna4752|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
TCTACGTCTCTGCCACACACACCCCGTACAGGAAGGAGTTTATCGGGTCG
GATGATTTGAGCCGCCAGAAGTGATGGCATTTACAGACTTAAGTGCGCCA
TCCACGAAAACCAAAGTCAAAGTTTCATCAGTCTTGCATCGCAACGTGAG
GGAGTTTGGTGCAGCACATATGTTCGATGGTAGCTCGGATAGTTGCTGGA
ATTCAGATCAGGGAACACCACAATGGATTGTGCTTCGTTTCCTGCGACCA
GTCCTTGTATGCCGGTTGCTGCTCATGTTTCAAGGCGGTTTCGCCGGCAA
AGAAATGCAAGTGAGAGTCACATTTCATACTCCACCCCTCTCTCGCGCCC
CTCTTCCCGCCTCCTCTCCCATTGCTCCTTCCGCTGACGCGGCCGCGACT
CCCTGTGAACACGAGCACACCAGTCCACCGCCGTCAAAGCCCCGGACGTC
GGTGGTAAACGGGAAGGATTCCTCCACAACCCTACCGATGAAAAGTCGCC
CCATGCTGGTGGGGACGTTTTACCCCGATGACGACAACAAATCACAGTCC
TTTGAACTGACCGCGGCCATCAGGGCAGCTGCACAAGAACGAGAAGCATC
GGTGCGAGGGGCAGAACGTGACGAAGATATCAGGACATATCATCATGACA
GAGGCCCCGAAGAAGGCGAGGAAGGGTTTGACTGTATGTGTAAGGTGGTG
GAAATGAAGCTGACTTTTAACGGCAGCTCGGACTTTTACGGTCGCGTGAC
GCTCTATCGCTTGGCTGTCTGGGGCCTTGAGGAGGACCAAGCGACGTAGC
ATGAAAGCAAAAATTTGATTGAAATGATTGGGATGGCTTGGACTTGGCGT
ACTCTCCTCGCCTCCCCTCGAGCGACATAATTAGAGAGGATGGTGAAGGA
AAGTGTACACTGTCGGCGATAATAAGATATCAACTGAGA

protein sequence of rna4752

>rna4752-protein ID=rna4752-protein|Name=rna4752|organism=Nannochloropsis gaditana|type=polypeptide|length=646bp
MDEHNIIFSQQDPNEVYELVDLLGEGSYGAVYRAQYKADPSKPPVAVKII
PAEEDLSSLKREIAILNQCKSEYVVEFKDCFFVDAEIWIIMEFCMGGSVA
DMLDATQRTLSEPQIRSICACAALGLAYLHDNHNIHRDLKAGNILLSMNG
KAKLADFGVSATLNHSMSKRKTVIGTPYWMAPEVIQEISYDGKADVWSLG
ITAIEMAEGMPPHFNVHPMRAIFLIPSKPPPQLAQRSTSGQSPWSQEFHD
FLSVCLVKDPNQRANAAALLTHPFLKADVDFLRARPAQGLAPIADLVGST
LEILASYRRSSIAAAPTPLEEQFARTRPLEEDGEEENGGTGKEHGSRGTS
GSVGRLRDGGAGENTLVRGPMMGRRFSHRQSSGSGSSHAGGRRMLEEGQP
GIEGRNRDNCETLVARTKVDVEEKDVKDEDWEQLRLWDRRQHQGVVQEQE
DQHGKARSSMDISCTGTVVRHRPSPGAAGLRRGKEAEGGEDATLMVASGA
GSPRDMQGRGGHHAPEANSGLQSAMRYLQGLSLSRRSGRSATRERESAST
SEEKGLTSGQERGSRATADQRKSTSETSFLRKSAVPNNGNSNYHDCKMRD
VAEMTREELQAMIRALESQYDMDATALEEAYTYQKKYLEDALRRCR

mRNA from alignment at CM002464.1:253159..255660-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4752 ID=rna4752|Name=rna4752|organism=Nannochloropsis gaditana|type=mRNA|length=2502bp|location=Sequence derived from alignment at CM002464.1:253159..255660- (Nannochloropsis gaditana)
TGTGGGCCGCTAGATCCTCGCAAACAAATTAAAGTAATGTAAAAGTTACA
CGGAGTCACGCCGCTGGCACCCTCTGACCAATCTCTCATCGTTCCAAAAT
GACAATGCATCTTTTTCAGGCTGGTTTCAAGGCTCTAACCTGGAAAGGCA
AGGGCAGAAGAAGCGTTGGGCCGGGGGCCCATTTCGGCTGAGAAGTCAAG
GCCATTACTATTGTAAGTCGCACTCTTCACGCGTTGCCATTCGCAGGTAC
CTTCTCTCACCCTCTCTTTCTTATGTAGGGTGCTGCTAACTTCAAGATTC
ACTAGCAAGCGTCGACATGGACGAGCACAACATAATTTTCTCTCAGCAGG
ATCCTAATGAGGTGTACGAACTGGTCGACTTGCTCGGAGAAGGTTCGTAT
GGCGCCGTCTATCGTGCACAGTACAAGGCAGACCCATCAAAGCCTCCCGT
TGCCGTCAAAATTATCCCCGCGGAGGAAGATCTTTCCAGCTTGAAACGCG
AAATCGCCATCCTAAATCAGTGCAAGAGCGAGTACGTGGTTGAGTTCAAG
GACTGTTTCTTCGTGGACGCCGAGATTTGGATCATCATGGAGTTTTGCAT
GGGAGGATCTGTAGCCGACATGCTGGATGCTACCCAGCGCACGTTGTCGG
AGCCCCAGATCCGTTCCATCTGCGCCTGTGCTGCCCTGGGTCTTGCCTAC
CTGCACGACAACCACAACATCCACCGAGACTTGAAAGCAGGCAACATCTT
GCTCTCCATGAACGGAAAAGCCAAGCTTGCCGATTTCGGAGTCTCCGCGA
CCCTGAACCACAGCATGAGCAAACGGAAGACCGTCATCGGGACCCCGTAT
TGGATGGCCCCGGAAGTAATCCAAGAAATTTCCTACGACGGGAAAGCGGA
TGTCTGGTCCCTGGGGATCACGGCCATTGAAATGGCGGAAGGAATGCCAC
CGCACTTCAACGTGCATCCCATGCGGGCAATTTTCCTGATTCCGTCCAAG
CCTCCCCCCCAACTCGCCCAGCGTTCTACCTCGGGCCAGTCCCCTTGGTC
CCAGGAGTTCCATGACTTCCTCTCCGTTTGCCTTGTCAAGGATCCGAACC
AGCGGGCCAATGCGGCCGCCCTCCTGACCCACCCTTTCTTGAAGGCCGAC
GTGGACTTCCTCCGCGCCCGCCCCGCCCAGGGTCTGGCCCCCATTGCGGA
CCTGGTGGGCTCTACCTTGGAAATTCTGGCGTCCTACCGTCGGAGCAGCA
TTGCCGCAGCTCCGACACCACTGGAAGAGCAGTTTGCCCGGACTCGCCCA
TTGGAGGAGGATGGGGAGGAGGAAAACGGAGGTACGGGGAAGGAGCATGG
GAGCCGCGGTACATCCGGGTCGGTTGGCAGGTTGCGGGACGGCGGGGCGG
GAGAGAATACGTTGGTCCGTGGCCCCATGATGGGCCGGCGCTTCAGTCAT
CGACAGAGCAGCGGCAGTGGCAGCAGCCATGCAGGGGGTAGGAGGATGCT
CGAGGAGGGTCAGCCAGGGATAGAGGGGCGGAATCGGGACAACTGTGAGA
CACTGGTGGCCCGGACAAAGGTAGATGTGGAGGAGAAAGACGTCAAGGAC
GAGGATTGGGAGCAATTGCGCCTGTGGGACAGGCGGCAGCACCAAGGCGT
AGTGCAGGAGCAGGAGGACCAGCACGGGAAAGCACGTTCGTCCATGGATA
TTTCCTGCACGGGAACTGTGGTGCGACATCGACCTTCCCCAGGGGCCGCC
GGTCTGCGTAGAGGCAAGGAAGCAGAGGGAGGAGAAGATGCCACGTTGAT
GGTGGCGTCTGGCGCAGGCAGTCCCCGAGACATGCAAGGCCGTGGGGGAC
ATCATGCCCCGGAGGCCAATTCTGGGTTGCAGTCCGCCATGCGGTATTTG
CAAGGTCTGTCGTTGAGTCGAAGAAGCGGACGGTCGGCTACGCGCGAGAG
GGAGAGTGCCTCTACCTCTGAGGAAAAGGGGTTGACCTCGGGGCAGGAGA
GAGGCAGCAGAGCCACGGCCGATCAGAGAAAATCTACCAGCGAGACTTCC
TTTCTCCGGAAAAGTGCGGTACCTAACAATGGCAATTCGAATTATCACGA
CTGTAAAATGCGTGACGTGGCTGAGATGACTCGTGAAGAGTTGCAAGCCA
TGATCCGAGCCCTTGAGAGTCAGTACGACATGGATGCCACGGCTTTGGAG
GAGGCTTACACATATCAGAAAAAGTATCTTGAAGACGCCTTACGACGGTG
TAGATGACTTGGTACGAAAGAATTTGTAAGAGGACCCCCGTGTAAAATGT
AATACGACATCAACTAAGTTGGAAAATGTGTTTTCATGCTGATCGACGAG
CCTCTGAGGTATCCTATTAAAAAGTGTACCTGAGGCATGGACGATGGAAA
TTTAAAAAAAATTGTTCGAGAAAAGCTAGCGACGTGACGTTTATTTCCCG
TGATAATGAATTACTTCTGTGACCATGTCATATGAAAGTCGCTTTTGGCA
GC

Coding sequence (CDS) from alignment at CM002464.1:253159..255660-

>rna4752 ID=rna4752|Name=rna4752|organism=Nannochloropsis gaditana|type=CDS|length=1941bp|location=Sequence derived from alignment at CM002464.1:253159..255660- (Nannochloropsis gaditana)
ATGGACGAGCACAACATAATTTTCTCTCAGCAGGATCCTAATGAGGTGTA
CGAACTGGTCGACTTGCTCGGAGAAGGTTCGTATGGCGCCGTCTATCGTG
CACAGTACAAGGCAGACCCATCAAAGCCTCCCGTTGCCGTCAAAATTATC
CCCGCGGAGGAAGATCTTTCCAGCTTGAAACGCGAAATCGCCATCCTAAA
TCAGTGCAAGAGCGAGTACGTGGTTGAGTTCAAGGACTGTTTCTTCGTGG
ACGCCGAGATTTGGATCATCATGGAGTTTTGCATGGGAGGATCTGTAGCC
GACATGCTGGATGCTACCCAGCGCACGTTGTCGGAGCCCCAGATCCGTTC
CATCTGCGCCTGTGCTGCCCTGGGTCTTGCCTACCTGCACGACAACCACA
ACATCCACCGAGACTTGAAAGCAGGCAACATCTTGCTCTCCATGAACGGA
AAAGCCAAGCTTGCCGATTTCGGAGTCTCCGCGACCCTGAACCACAGCAT
GAGCAAACGGAAGACCGTCATCGGGACCCCGTATTGGATGGCCCCGGAAG
TAATCCAAGAAATTTCCTACGACGGGAAAGCGGATGTCTGGTCCCTGGGG
ATCACGGCCATTGAAATGGCGGAAGGAATGCCACCGCACTTCAACGTGCA
TCCCATGCGGGCAATTTTCCTGATTCCGTCCAAGCCTCCCCCCCAACTCG
CCCAGCGTTCTACCTCGGGCCAGTCCCCTTGGTCCCAGGAGTTCCATGAC
TTCCTCTCCGTTTGCCTTGTCAAGGATCCGAACCAGCGGGCCAATGCGGC
CGCCCTCCTGACCCACCCTTTCTTGAAGGCCGACGTGGACTTCCTCCGCG
CCCGCCCCGCCCAGGGTCTGGCCCCCATTGCGGACCTGGTGGGCTCTACC
TTGGAAATTCTGGCGTCCTACCGTCGGAGCAGCATTGCCGCAGCTCCGAC
ACCACTGGAAGAGCAGTTTGCCCGGACTCGCCCATTGGAGGAGGATGGGG
AGGAGGAAAACGGAGGTACGGGGAAGGAGCATGGGAGCCGCGGTACATCC
GGGTCGGTTGGCAGGTTGCGGGACGGCGGGGCGGGAGAGAATACGTTGGT
CCGTGGCCCCATGATGGGCCGGCGCTTCAGTCATCGACAGAGCAGCGGCA
GTGGCAGCAGCCATGCAGGGGGTAGGAGGATGCTCGAGGAGGGTCAGCCA
GGGATAGAGGGGCGGAATCGGGACAACTGTGAGACACTGGTGGCCCGGAC
AAAGGTAGATGTGGAGGAGAAAGACGTCAAGGACGAGGATTGGGAGCAAT
TGCGCCTGTGGGACAGGCGGCAGCACCAAGGCGTAGTGCAGGAGCAGGAG
GACCAGCACGGGAAAGCACGTTCGTCCATGGATATTTCCTGCACGGGAAC
TGTGGTGCGACATCGACCTTCCCCAGGGGCCGCCGGTCTGCGTAGAGGCA
AGGAAGCAGAGGGAGGAGAAGATGCCACGTTGATGGTGGCGTCTGGCGCA
GGCAGTCCCCGAGACATGCAAGGCCGTGGGGGACATCATGCCCCGGAGGC
CAATTCTGGGTTGCAGTCCGCCATGCGGTATTTGCAAGGTCTGTCGTTGA
GTCGAAGAAGCGGACGGTCGGCTACGCGCGAGAGGGAGAGTGCCTCTACC
TCTGAGGAAAAGGGGTTGACCTCGGGGCAGGAGAGAGGCAGCAGAGCCAC
GGCCGATCAGAGAAAATCTACCAGCGAGACTTCCTTTCTCCGGAAAAGTG
CGGTACCTAACAATGGCAATTCGAATTATCACGACTGTAAAATGCGTGAC
GTGGCTGAGATGACTCGTGAAGAGTTGCAAGCCATGATCCGAGCCCTTGA
GAGTCAGTACGACATGGATGCCACGGCTTTGGAGGAGGCTTACACATATC
AGAAAAAGTATCTTGAAGACGCCTTACGACGGTGTAGATGA

Synonyms

Publications