rna4647, rna4647 (mRNA) Nannochloropsis gaditana

Overview
Namerna4647
Unique Namerna4647
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length537
Alignment locationCM002463.1:1136673..1137083 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103752g1.7366.mrna
Orig protein idgnl|cribi|Naga_103752g1.7366
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:1136673..1137083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103752g1gene4484Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4647rna4647-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26038.1cds4635Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4647 ID=rna4647|Name=rna4647|organism=Nannochloropsis gaditana|type=mRNA|length=537bp
CGTCGCTGGCTGTGCTTCGGTTTTCGATTGCTTCTTCTACGGGTGGGCGT
GTTTCTGGGTACTCTTCTTTCCTTTTCAAGTCCTTTTCTTTCCATGTCTG
TATGCATCTGTCTCTGTACTTGATTGCCAATGACAGCAAAACCACCTACC
CTCTTGGCGGCCACCTCCCTCCCGTTCTTCCTGCCTCCCTCCTTCCCCCC
TCTCACATTCTCTTTTCCTCCTTTTATTTTCCATTTCCTGGGCAGCAATC
AAATTATCTGGTTCGTGGACGACACCAACGTGTACCGCGTCACGATCCAC
AAGACCTTTGAAGGCAACCTCACGACCAAGCCCATCAACGGTGCCATTTT
CATCTTCAATCCCCGGTCGGGCCAGCTCTTCCTCAAGATCATTCATACCT
CGGTGTGGGCGGGACAAAAGCGTCTTTCCCAGCTGGCGAAATGGAAGACT
GCGGAAGAAGTGGCTGCGCTGATTCGCTCCCTCCACGTCACTGAACAACC
GAACCAGGTCGGTCTCTCTCTTGCCCTCCCTCCTTCC
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protein sequence of rna4647

>rna4647-protein ID=rna4647-protein|Name=rna4647|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
GGWEGGRDGGKGSIHVRSCAYPGFCSMGCFRRHGTLARDSFFLLLPSMNL
SVQVAEIEKQAREQSQLTTLTTRTQNVHGCVGGAKGGILLTLILTLTLTL
TLTLTLP
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mRNA from alignment at CM002463.1:1136673..1137083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4647 ID=rna4647|Name=rna4647|organism=Nannochloropsis gaditana|type=mRNA|length=411bp|location=Sequence derived from alignment at CM002463.1:1136673..1137083+ (Nannochloropsis gaditana)
ggagggtgggagggagggagggatggagggaagggctcAATCCATGTTCG
TAGCTGTGCGTATCCTGGGTTTTGCTCGATGGGATGTTTTCGGCGTCATG
GTACCCTTGCTCGTGattcatttttcctccttttacCCTCGATGAATCTC
TCCGTGCAGGTGGCGGAGATCGAAAAACAGGCCCGAGAGCAATCGCAATT
GACGACGCTGACAACCCGCACGCAAAACGTTCACGGGTGCGTTGGGggag
caaagggagggatcctcctaaccctaatcctaacccttaccctaacccta
accctaaccctaaccctaccTTGAACCCTACCCCGGCTGAAAGTGACGGG
ATcacggaggagagagaggaagccgTGACCACTGATTGCTTGCgtctcat
tcctccctctc
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Coding sequence (CDS) from alignment at CM002463.1:1136673..1137083+

>rna4647 ID=rna4647|Name=rna4647|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002463.1:1136673..1137083+ (Nannochloropsis gaditana)
ggagggtgggagggagggagggatggagggaagggctcAATCCATGTTCG
TAGCTGTGCGTATCCTGGGTTTTGCTCGATGGGATGTTTTCGGCGTCATG
GTACCCTTGCTCGTGattcatttttcctccttttacCCTCGATGAATCTC
TCCGTGCAGGTGGCGGAGATCGAAAAACAGGCCCGAGAGCAATCGCAATT
GACGACGCTGACAACCCGCACGCAAAACGTTCACGGGTGCGTTGGGggag
caaagggagggatcctcctaaccctaatcctaacccttaccctaacccta
accctaaccctaaccctaccTTGA
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Synonyms
Publications