EWM26121.1, cds4571 (CDS) Nannochloropsis gaditana

Overview
NameEWM26121.1
Unique Namecds4571
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:970429..970500 -
Alignment locationCM002463.1:970277..970333 -
Alignment locationCM002463.1:969602..970053 -
Alignment locationCM002463.1:968503..969319 -
Alignment locationCM002463.1:968210..968314 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26121.1
Productfarnesyltransferase beta subunit
Orig transcript idgnl|cribi|Naga_100014g62.9298.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:970429..970500 -
CM002463.1supercontigCM002463.1:970277..970333 -
CM002463.1supercontigCM002463.1:969602..970053 -
CM002463.1supercontigCM002463.1:968503..969319 -
CM002463.1supercontigCM002463.1:968210..968314 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0018343protein farnesylation
GO:0042127regulation of cell proliferation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005965protein farnesyltransferase complex
Vocabulary: INTERPRO
TermDefinition
IPR026872FTB
IPR008930Terpenoid_cyclase/PrenylTrfase
IPR001330Prenyltrans
Homology
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|585108115|gb|EWM26121.1| (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 1038.48 bits (2684), Expect = 0.000e+0
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 0
Query:    1 MTSLPCASRPLSRVVGKTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 500
            MTSLPCASRPLSRVVGKTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL
Sbjct:    1 MTSLPCASRPLSRVVGKTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 500          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|585108116|gb|EWM26122.1| (farnesyltransferase beta subunit [Nannochloropsis gaditana])

HSP 1 Score: 892.878 bits (2306), Expect = 0.000e+0
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0
Query:   73 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 500
            MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL
Sbjct:    1 MKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVLLL 428          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|553196485|ref|XP_005856356.1| (protein farnesyltransferase subunit beta, partial [Nannochloropsis gaditana CCMP526] >gi|422292710|gb|EKU20012.1| protein farnesyltransferase subunit beta, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 374.785 bits (961), Expect = 2.342e-126
Identity = 180/181 (99.45%), Postives = 180/181 (99.45%), Query Frame = 0
Query:   17 KTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVD 197
            KTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDG VD
Sbjct:    1 KTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGYVD 181          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|953491778|emb|CEG45787.1| (farnesyltransferase beta subunit [Plasmopara halstedii])

HSP 1 Score: 345.895 bits (886), Expect = 1.447e-111
Identity = 210/478 (43.93%), Postives = 266/478 (55.65%), Query Frame = 0
Query:   18 TRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGG--PYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHL-SGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFS-LQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREG 491
            TRT  EQ +CE+SC+        L    + +LQ     N   +  L+RE+HVAYL +GLT L  GF+ LDASRPW+ YWILH+L+LL  L          ++  +V  T+  C N     G G  P Q+ H A  YA+ L L +LGT +A +++DR +LY++F++RKH  +G F  HD GEVDVR TY VISIAS+  +LT +L AGVV+Y+LSCQTYEGGFGGE   EAHGGY FC+ A L IL   D +  FS L  W+A RQM  EGG+QGRTNKLVDGCYSFWQGA   L+       +E R+                                 FGD      + P +             CH         +  LQRYIL C Q + GGLRDKP KPRD YHTCY LSGLS AQ+G         + R     G P+V+GD  NL+  T+P YNI  DKV +A+ +F  +G
Sbjct:   22 TRTSSEQEDCESSCSLFFFPLPELPLDQQLELQQLNFVNTDLEPLLMREKHVAYLKRGLTRLSAGFVTLDASRPWIIYWILHALELLDALPD--------EMTERVIGTLKPCWNDDHDGGFGGGPKQLGHTATNYASCLTLALLGTLDALESVDRLSLYRFFMSRKHAATGAFMAHDGGEVDVRVTYCVISIASLYGILTDELKAGVVDYILSCQTYEGGFGGEPGNEAHGGYAFCSVATLYILEAVDQIRDFSGLLHWLANRQMPFEGGYQGRTNKLVDGCYSFWQGAIPALLA------SEVRR--------------------------------RFGD------IVPYQ-------------CH---------REQLQRYILLCGQEISGGLRDKPGKPRDHYHTCYCLSGLSVAQYG---------DGR-----GSPVVFGDASNLVARTHPAYNISYDKVIKAIEYFKSKG 411          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|1205944321|ref|XP_002458458.2| (protein farnesyltransferase subunit beta isoform X1 [Sorghum bicolor] >gi|1174561094|gb|OQU87492.1| hypothetical protein SORBI_3003G289400 [Sorghum bicolor])

HSP 1 Score: 337.806 bits (865), Expect = 1.672e-107
Identity = 203/489 (41.51%), Postives = 271/489 (55.42%), Query Frame = 0
Query:    5 PCASRP-LSRVVGKTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALH-GETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPL-VYGDIGNLLEITNPIYNIRQDKVDRALRFFYRE 490
            P A+ P L R+   T T+ EQ + EA    +  +      +++  +           + L R++H+ YL +GL HLGP F  LDA+RPWLCYW++H L LL             +L   +   +  CQ+  GG+ GGP Q+ H A TYAAV  L+ +G+E A  +I+R  LYK+ L  K +SG F MHD GE+DVR +YT IS+AS++N+L  +LA GV +Y+ SCQTYEGG  GE   EAHGGY FC  AALI+L+E + VDL SL GW+A RQ  VE GFQGRTNKLVDGCYSFWQGA   L +  L   + + +     ++ + G    C+  SY       G + K+F    D   V             I+ S  +G     +   ALQ+YIL C+Q L+GG RDKP K RD YH+CY LSGLS  Q+  +            + C  P  V G   NLLE  +P+YN+  DK   A  FF +E
Sbjct:   51 PAAADPELPRL---TVTQVEQMKVEARVGDIYRALSGAAPNTKSIM-----------LELWRDQHIEYLTRGLRHLGPAFHVLDANRPWLCYWMVHPLALL-------DEALDDNLEDDIIDFLARCQDKDGGYSGGPGQLPHLATTYAAVNTLVTIGSERALSSINRGNLYKFMLRMKDVSGAFRMHDGGEIDVRASYTAISVASLVNILDVELAKGVGDYIASCQTYEGGIAGEPYAEAHGGYTFCGLAALILLNEAEKVDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALTQKLLTIVDKQLKSSYSCKRPSGGDA--CSTSSY-------GCTAKNFSSAVDYAKV---------GFDFIQQSNQIGPLFHNI---ALQQYILLCSQVLEGGFRDKPGKNRDHYHSCYCLSGLSVCQYSALTD---------ADSCPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYDFFSKE 487          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|1050646937|ref|XP_017646788.1| (PREDICTED: protein farnesyltransferase subunit beta [Gossypium arboreum])

HSP 1 Score: 334.339 bits (856), Expect = 1.539e-106
Identity = 200/485 (41.24%), Postives = 261/485 (53.81%), Query Frame = 0
Query:   18 TRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYT--EDLRDSGVSG--------KDFGD---TTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 489
            T T+ +Q   E     +  ++ NL  SS+  +           + L RE HV YL KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG E+A  +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL  L  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+   E + +     E  G     +PQ+ T  +   + G++G         + GD   T+   +V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:    8 TVTQRDQILVEQQVFDIFKTFYNLPPSSQSFM-----------LELQRENHVEYLTKGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELEDNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGEKALSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDSLDLSGLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLK-RLNSTKEVKPIPLGDGEGSGEE---SPQTTTSSDAAGEEGLNGDLSLGGSHSEIGDQHNTSSQDNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYREAYEFFTK 452          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|1029008830|ref|XP_016668301.1| (PREDICTED: protein farnesyltransferase subunit beta-like [Gossypium hirsutum])

HSP 1 Score: 333.954 bits (855), Expect = 2.037e-106
Identity = 200/485 (41.24%), Postives = 262/485 (54.02%), Query Frame = 0
Query:   18 TRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQSYT--EDLRDSGVSG--------KDFGD---TTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 489
            T T+ +Q   E     +  ++ NL  SS+  +           + L RE HV YL KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG ++A  +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL SL  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+   E + +     E  G     +PQ+ T  +   + G++G         + GD   T+   +V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:    8 TVTQRDQILVEQQVFDIFKTFYNLPPSSQSFM-----------LELQRENHVEYLTKGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELENNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGDKALSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDRLDLSSLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKEVKPIPLGDGEGSGEE---SPQTTTSSDAAGEEGLNGDLSLGGSHSEIGDQHNTSSQDNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYRDAYEFFTK 452          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|1205944323|ref|XP_021312379.1| (protein farnesyltransferase subunit beta isoform X2 [Sorghum bicolor] >gi|1174561093|gb|OQU87491.1| hypothetical protein SORBI_3003G289400 [Sorghum bicolor])

HSP 1 Score: 334.724 bits (857), Expect = 2.957e-106
Identity = 203/489 (41.51%), Postives = 273/489 (55.83%), Query Frame = 0
Query:    5 PCASRP-LSRVVGKTRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALH-GETETRKVVGWRKENDGRIVLCAPQSYTEDLRDSGVSGKDFGDTTDLRSVCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPL-VYGDIGNLLEITNPIYNIRQDKVDRALRFFYRE 490
            P A+ P L R+   T T+ EQ + EA    +  +      +++  +           + L R++H+ YL +GL HLGP F  LDA+RPWLCYW++H L LL             +L   +   +  CQ+  GG+ GGP Q+ H A TYAAV  L+ +G+E A  +I+R  LYK+ L  K +SG F MHD GE+DVR +YT IS+AS++N+L  +LA GV +Y+ SCQTYEGG  GE   EAHGGY FC  AALI+L+E + VDL SL GW+A RQ  VE GFQGRTNKLVDGCYSFWQGA   L +  L   + + +     ++ + G    C+  SY       G + K+F  ++D   V             I+ S  +G     +   ALQ+YIL C+Q L+GG RDKP K RD YH+CY LSGLS  Q+  +            + C  P  V G   NLLE  +P+YN+  DK   A  FF +E
Sbjct:   51 PAAADPELPRL---TVTQVEQMKVEARVGDIYRALSGAAPNTKSIM-----------LELWRDQHIEYLTRGLRHLGPAFHVLDANRPWLCYWMVHPLALL-------DEALDDNLEDDIIDFLARCQDKDGGYSGGPGQLPHLATTYAAVNTLVTIGSERALSSINRGNLYKFMLRMKDVSGAFRMHDGGEIDVRASYTAISVASLVNILDVELAKGVGDYIASCQTYEGGIAGEPYAEAHGGYTFCGLAALILLNEAEKVDLPSLIGWVAFRQ-GVECGFQGRTNKLVDGCYSFWQGAAIALTQKLLTIVDKQLKSSYSCKRPSGGDA--CSTSSY-------GCTAKNF--SSDYAKV---------GFDFIQQSNQIGPLFHNI---ALQQYILLCSQVLEGGFRDKPGKNRDHYHSCYCLSGLSVCQYSALTD---------ADSCPLPQHVLGPYSNLLEPIHPLYNVVLDKYHTAYDFFSKE 485          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|823167845|ref|XP_012483791.1| (PREDICTED: protein farnesyltransferase subunit beta [Gossypium raimondii] >gi|763766544|gb|KJB33759.1| hypothetical protein B456_006G029800 [Gossypium raimondii])

HSP 1 Score: 331.643 bits (849), Expect = 1.468e-105
Identity = 201/486 (41.36%), Postives = 259/486 (53.29%), Query Frame = 0
Query:   18 TRTEEEQAECEASCTSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNSGGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQGATAILVEMALHGETETRKVVGWRKENDGRIVLCAPQS-----------YTEDLRDSGVSGKDFGDTTDLRS---VCPRETAMKSDMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYR 489
            T T+ +Q   E     +  ++ NL  SS+  +           + L RE HV YL KGLT LGP F  LDA+RPW+CYWILHS+ LL             +L       ++ CQ   GG+ GGP Q+ H A TYAAV +L+ LG ++A+ +I+R  LY +    K  SGGF MHD GE+DVR  YT IS+AS+LN+L  +L   V  Y+LSCQTYEGG  GE   EAHGGY FC  A +I+++E D +DL SL  W+  RQ  VEGGFQGRTNKLVDGCYSFWQG    L++  L+     + +     E  G     +PQ+             EDL   G S  + GD  +  S   V   +        N+EP           +  ALQ+YIL C+Q L+GGLRDKP K RD YHTCY LSGLS  Q   ++        R         V G   NLLE  +P+YN+  D+   A  FF +
Sbjct:    8 TVTQRDQILVEQQVFDIFKTFYNLPPSSQSFM-----------LELQRENHVEYLTKGLTGLGPSFCVLDANRPWICYWILHSIALL-------DEFVDPELEDNTIDFLSRCQGPNGGYAGGPGQMPHLATTYAAVNSLVTLGGDKAFSSINREKLYMFLRQMKDASGGFRMHDGGEIDVRACYTAISVASLLNILDDELVQNVGNYILSCQTYEGGISGEPGSEAHGGYTFCGLATMILINEVDRLDLSSLTDWVVFRQ-GVEGGFQGRTNKLVDGCYSFWQGGIFALLKR-LNSTKGVKPIPLGDGEGSGEE---SPQTTASSDAAGEEGLNEDLSLGG-SHSEIGDQNNTSSQVNVIDIDHNHSKGHANVEP---------LFNSLALQQYILLCSQELNGGLRDKPGKSRDHYHTCYCLSGLSVCQRSWLEDEDSPPLPRA--------VLGPYSNLLEPIHPLYNVVLDRYRGAHEFFTK 452          
BLAST of EWM26121.1 vs. NCBI_GenBank
Match: gi|298711034|emb|CBJ26429.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 332.413 bits (851), Expect = 1.112e-104
Identity = 171/321 (53.27%), Postives = 218/321 (67.91%), Query Frame = 0
Query:   18 TRTEEEQAECEASC--TSLLNSWCNLDQSSRGKLQASGLFNDSGDIRLLRERHVAYLMKGLTHLGPGFICLDASRPWLCYWILHSLDLLRGLESRSHSIFRADLARKVTITMNSCQNS-GGGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDRPALYKWFLARKHLSGGFCMHDDGEVDVRGTYTVISIASMLNMLTPQLAAGVVEYLLSCQTYEGGFGGETDQEAHGGYVFCAFAALIILSETDGVDLFSLQGWIARRQMSVEGGFQGRTNKLVDGCYSFWQ-GATAILVEMALHGETETRKVVGWRKENDGRIVL 334
            T T  +Q+ECE  C    L      L+     +    G+ N +G+  L+R +H  YLM+GL  LGPGFI LDASRPW+ YWILHSLDLL     +       ++ +++  T+ SCQ++  GGFGGGP Q+ HCAP YA+VL+LLILGT EAY  I+R ALY+ F++ KH SGGF MHDDGEVD RGTYTVI++AS+LNMLTP+L+ GV ++   CQTYEGGFGGE   EAHGGY FCAFA+L+IL   +  DL  L+ W+  RQM  EGGFQGRTNKLVDGCYSFWQ GA AIL  +    E+E        +++ GR+++
Sbjct:   32 TATSRQQSECERMCELNFLPLRPGALEDEELAEFTDQGIVNAAGEAVLMRTKHEVYLMRGLCGLGPGFISLDASRPWMVYWILHSLDLLDHFPQQ-------EMTQRILRTVLSCQDTINGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIERSALYRLFMSLKHASGGFRMHDDGEVDARGTYTVIAVASLLNMLTPELSEGVADFAARCQTYEGGFGGEPWNEAHGGYTFCAFASLVILGAGERADLEGLRHWLCARQMRAEGGFQGRTNKLVDGCYSFWQGGAVAILDYVTAGRESEVS-----HRDSSGRLLV 340          

HSP 2 Score: 100.523 bits (249), Expect = 7.079e-19
Identity = 57/126 (45.24%), Postives = 69/126 (54.76%), Query Frame = 0
Query:  373 DMPNIEPSCHVGGNLECLSQHALQRYILHCAQALDGGLRDKPDKPRDFYHTCYNLSGLSCAQWGQMDSLKESKNARGLNPCGHPLVYGDIGNLLEITNPIYNIRQDKVDRALRFFYREGPESHEVL 498
            D+  +E      G+    S+  LQ Y+L C+Q  DGGLRDKP KPRDFYHTCY LSGLS AQ     S               P V G+  NLL  TNP+YNI +DKV RA+ +F +  P  H  L
Sbjct:  424 DVEILEVGADEDGDGLVFSRKRLQEYVLMCSQQSDGGLRDKPGKPRDFYHTCYTLSGLSVAQHCLSSS---------------PTVVGNSSNLLRPTNPVYNIAEDKVLRAISYF-QALPSDHATL 533          
The following BLAST results are available for this feature:
BLAST of EWM26121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108115|gb|EWM26121.1|0.000e+0100.00farnesyltransferase beta subunit [Nannochloropsis ... [more]
gi|585108116|gb|EWM26122.1|0.000e+0100.00farnesyltransferase beta subunit [Nannochloropsis ... [more]
gi|553196485|ref|XP_005856356.1|2.342e-12699.45protein farnesyltransferase subunit beta, partial ... [more]
gi|953491778|emb|CEG45787.1|1.447e-11143.93farnesyltransferase beta subunit [Plasmopara halst... [more]
gi|1205944321|ref|XP_002458458.2|1.672e-10741.51protein farnesyltransferase subunit beta isoform X... [more]
gi|1050646937|ref|XP_017646788.1|1.539e-10641.24PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|1029008830|ref|XP_016668301.1|2.037e-10641.24PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|1205944323|ref|XP_021312379.1|2.957e-10641.51protein farnesyltransferase subunit beta isoform X... [more]
gi|823167845|ref|XP_012483791.1|1.468e-10541.36PREDICTED: protein farnesyltransferase subunit bet... [more]
gi|298711034|emb|CBJ26429.1|1.112e-10453.27conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4583rna4583Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications