rna4576, rna4576 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4576
Unique Name	rna4576
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2326
Alignment location	CM002463.1:948633..951436 -

Link to JBrowse

Properties


Property Name	Value
Product	n-terminal kinase-like protein
Orig transcript id	gnl\|cribi\|Naga_100014g54.9323.mrna
Orig protein id	gnl\|cribi\|Naga_100014g54.9323
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:948633..951436 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g54	gene4415	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26146.1	cds4564	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4576	rna4576-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:948633..951436-
coding sequence from alignment at CM002463.1:948633..951436-

mRNA sequence

>rna4576 ID=rna4576|Name=rna4576|organism=Nannochloropsis gaditana|type=mRNA|length=2326bp
GGAGGTTACCACGGAGCCGTGAAAACGTTTCAAGACGGGGGGTTCCGCAG
CCGAAGAGATGCAACTATCTGAACAGGGCGACAAGATATAAATGTTTCTT
CACTTTCAGTGCGAAATTGCTCTAAACCGTCTGACGTTGGACGCAGTCAC
GCGGATCATCTCCTCTCAGCGTCCCTCAGCATCGCCGACGATCAGGACAG
TAACATGGCAGGACTGACCAGTTTTTGATTGAATTTCCTCAGCACAGTGC
TTATAGCAACTGGGTAGGCACTGGAAGGGACTGTGATTATATTCGGCTCA
GGATATTGGGGCCCCTATCGACATCTGTAGTCTACTTGTGAGGAGGATGG
AGAGTACAGCACCTCTCGAACCTTATCCTGCGCCACCTTTGCAAGCTATC
GACAAAGAGGGCTTTGAATACCCACCGCAGCCCCTACCTCCCGCAGAATT
GTTCCAATCAATGCTTTGGTATCTCCGTTCGAAAGGGCAATGGACAGGTT
TTTCAGGAGGAGGGGCAAAACTACCCACTGCAGCCAGGAGGTCCTTGGAG
CCTGCAGAGAAAGACTTGGCTTCCGCGCTTGAATGTGTTGAGGAGGCAAT
GCGTGATCTGCTTATCGTCGCAGATTTGATGCACGTTGCGCGGGAAGAGC
GCTCTTTTATAGGGCAAGACAGCCTGACGAATGCTCATCTATCTATTGGC
ACTCCCCAAGTCCCCGTCTCATACATCGCGCCCGAAGTCATTTTTGAAAT
GAAGAAAAGAAGCATGTCACATGCTGCGAATGACATGACTTCATGGGTGA
AAAGAATGCATGAGACGCTTCAGAAAGGCCGCCGCCTCACAAAGACGATG
GCGGCTCTCCGTCGCACTTCGAGATTACAAGCAGGTGGGCTGAAAGCAAT
TTTGACCCGACCGCTATCAGCGGGAGATCCTGTTTCAGTGCTTTTCGATA
CCAAACAAGGCCCTGTTGCCCTTCCTTTGAAGATTGATGCTAGCGGAATC
CCGCATGTTTCAGGACGAGCCGGAGTGGAGGCTGAGCAGGAAGAAACGGG
GGTGGCTCCCTCCCAGCCGCCCACCAGCTGCCTGCGGGTCTACCTTACGG
ACGGCGCCCAAGGTACTTCCGCTGAGTGTGCATCCTGGCGGCCTATAGAT
ACGGGTAGAGTGGATGGCCCCGGTGGCCTGGCATTGTCTCTTCAAGCCTT
GGAAGACGAGGCCTACATGGGCCAGGTGTTCGAATCCGTTCGCCTTGAAG
TGGCGGCCCCCGCCCAGCCGTGGGTGGACAGGAATATTTTTCCAGAGCGA
GATGCTGTGGGGGACGAGTCATCTAGCATTGACGGGCGACACAAAACGTA
CGATGGACTAGCGAGGCTGCGCCCTGTGGGCTCGCCTTATCAGGTTGTTG
AGGTTTCAGGCGAGGAGGTCGTAGTTGAGGTGAACCCTTTCCACCACCTG
GGGATCGGTTTTGGCTCAGGATTGGATGGCCGTCCGCGGCTGCGGCCCTC
ACGGTCGGATTCTCTGCATAGAGTCTGCCAGCTGGCTTTTGTGCGTCTAA
TCGAGCTGACGTCGCGGCGGGGAAAACCGTTCGAAGAGCACGAGGTACAG
GAAGACGAGTATCCTGAGGGTATCCTGGCAAGACTTACAGTCGAAGTCTC
CCACCTCCTCTTCGTGGATAGACTGGTGATGCTTTTGGATGAGCTTGTGA
GAACGGTCAAGGATCCTACGGTCCCGACTACCCTGGAAAGCTGGCGCTGG
GTGACCTTCCCTTTCTCGGCGCCCGAGTCACATTTTGTCATTTTAGGCCG
GAAAGAGGATTGTGAAGCAGAGGCATTTCTCATTGATATTCGCGTTACCG
GCACTTCTGTACGGGTGTCTTACACGTTCAGCAGACAAGGTGGCAAACAA
AATCGCACCCTTAGCACAGATGCACTGTCCGGGCTTGGAGACTTGAAGGT
GTACCTTGAGCGGCATCTGGCACTCCGAAGGCCCCCATCAGAAACATCGA
CAAAGTAATACAAGGGACAGGGCCTCAGGTCGAGGAGACACGTCTATTAC
AAGTTACTTTAATTTATGTAATTAATGTGGTGCATTTACGCTCAGGATAA
TTTCTCAAAAGTCGTCCCAGTCGCTGGTCTTAGACGCCACAAGCTTCTTC
GCTTGCAGGCGTGACCGTCCCGTTCCGATTGCTTTCTTCGGTCCCGACTC
AGGCAGCGAAACAGACAATGGCGACGAGACAGCTGTACCATCTTTGATAG
ACAAAGGGATTTTCAGACTCGGTTGCATGGCCATTAGGTTGTGCTTTGAG
GGTGGAGCTGGGCTGGGATCGTTGAG

protein sequence of rna4576

>rna4576-protein ID=rna4576-protein|Name=rna4576|organism=Nannochloropsis gaditana|type=polypeptide|length=885bp
MLKAMCFFISSHSLSAVRAVSRNGNARRARSQAAMGQAASFPFEVSEPAD
ASHSARNREAYWKHFKGRRKADQAEVSIHKLDKVSTPQLKVEAGLHGFQK
MKTMRHPYILQYLDGVDLEKEVILVTESVTPLGEWLAGLKAEFREEQVAW
GLRCISAALDFLTGSPRHMTHGMVCSQNIFVTKAGDWKLGGLDLLCEWRE
GGKDIFHFQLHEALLPAQYRAPERRSNDMRAMLKGFPGALDIWALGILIG
EVVEQSQGKPPSGALASIQRRLLSGDSSDRPSAGQILRHSYFSPRGTKEL
IRVLDFLENFSLKEDGEKMDFFNSLVQSVARLPPEVGLHKILPTFRDYVH
VGVGGNVSNTQVPDQALVQQQARQRQLVLAALPVCLEILKSLDDAAFADM
GEPLLVSLFGMNDRAIRAMLLQHLQPLASKLSQNNINGRLFDSVLTGFAD
SAPQLRELTLKSMLSFSHRLNEKNLNDRLMRCLTKLQVDPEPSIRTNTTI
FLGRIAAQLKGGSHARVLLPPFLKACRDPFPHARLAGLKAAAACITYFDP
QSMATKVLPVVASLLIDVDGAVRDAAFHCQDVFIKALQAHAQKMKEDEDK
RQSHTLGKQAGGGEGSESLSSSVLGASAASLGGLTSSVAAWGAQRMWTSP
VRSLSHSGSSGVDRDDLVSKELCEASMKGGTSGPKQNEDDFFDTLAPSAP
GSRVAAAASEDWGILTEGVKENGWTMDDDDEILGMQSSFGTRSAGEKENT
SLSVSGLPRVSEKTEHAGRAIGPTTARKASPLTLGGFSKGTTAPLGGTGT
LRPVTDDDLFSMLNDPSPAPPSKHNLMAMQPSLKIPLSIKDGTAVSSPLS
VSLPESGPKKAIGTGRSRLQAKKLVASKTSDWDDF

mRNA from alignment at CM002463.1:948633..951436-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4576 ID=rna4576|Name=rna4576|organism=Nannochloropsis gaditana|type=mRNA|length=2804bp|location=Sequence derived from alignment at CM002463.1:948633..951436- (Nannochloropsis gaditana)
GGACGGTGACTCTAATCACTCTGAGCTCCCACACCACACCATCATATTAC
TGTCATATGTTAAAGGCAATGTGTTTCTTCATCTCTTCCCATTCCCTTTC
CGCAGTACGTGCAGTCAGTAGAAACGGAAACGCACGCCGCGCGCGAAGCC
AAGCAGCGATGGGCCAAGCGGCCTCTTTCCCATTTGAGGTATCAGAGCCA
GCCGATGCTTCGCATTCAGCACGTAATCGTGAAGCCTATTGGAAGCATTT
CAAAGGGCGGCGCAAAGCGGATCAAGCAGAGGTTTCCATTCATAAGCTGG
ACAAGGTTAGCACGCCTCAGCTGAAGGTCGAGGCAGGCCTTCATGGATTC
CAAAAGATGAAGACAATGCGACATCCATACATTCTCCAGTATTTGGATGG
TGTGGATTTGGAAAAAGAAGTGATTCTGGTTACCGAATCAGTGACGCCAC
TAGGAGAATGGTTGGCTGGACTGAAAGCAGAATTTCGCGAGGAGCAAGTA
GCTTGGGGCCTTCGATGCATCTCGGCTGCCCTGGACTTCTTGACGGGATC
CCCGCGCCACATGACGCACGGCATGGTCTGCAGCCAGAATATTTTTGTGA
CCAAAGCAGGAGACTGGAAATTAGGAGGGCTTGATCTGCTCTGCGAGTGG
CGCGAGGGCGGCAAGGACATTTTTCACTTCCAGCTTCACGAGGCCTTGCT
TCCTGCCCAATACCGTGCACCCGAGCGTCGAAGCAATGACATGAGGGCGA
TGCTGAAGGGTTTCCCGGGTGCCCTTGATATTTGGGCCTTGGGAATTCTG
ATTGGGGAGGTTGTAGAGCAAAGTCAAGGCAAGCCCCCATCTGGAGCACT
GGCTAGCATCCAACGCCGGCTCCTTTCGGGGGACAGCTCGGATCGACCCT
CGGCCGGTCAAATCTTGCGGCATTCATACTTCTCACCAAGAGGTACTAAG
GAGCTGATACGCGTGCTCGATTTTTTGGAAAATTTTTCTTTAAAAGAGGA
CGGGGAGAAGATGGATTTTTTCAACAGCCTCGTTCAGTCGGTAGCGCGGT
TACCCCCGGAGGTCGGGCTCCACAAAATATTGCCCACCTTCCGGGATTAC
GTGCACGTCGGAGTCGGGGGTAATGTCTCTAACACGCAAGTCCCCGATCA
AGCGCTTGTGCAGCAGCAAGCGCGACAACGTCAACTTGTGCTGGCTGCCC
TGCCCGTGTGCCTGGAGATCCTGAAGAGCCTCGACGATGCTGCCTTCGCG
GACATGGGGGAGCCTCTACTCGTCAGCCTCTTTGGAATGAACGACCGGGC
GATCCGGGCAATGCTCCTGCAGCATCTCCAACCGCTGGCGAGCAAGCTTT
CACAGAACAACATCAACGGGCGGCTCTTCGACTCCGTGCTGACGGGTTTC
GCCGACAGCGCTCCGCAGCTCCGAGAGCTGACCCTCAAATCCATGCTCAG
CTTCAGCCATCGCCTCAACGAGAAGAATCTCAACGATCGCCTCATGCGTT
GCCTCACAAAGCTCCAAGTGGACCCCGAGCCCTCCATCCGTACCAACACA
ACCATCTTCCTGGGCCGCATCGCCGCACAACTCAAAGGCGGCTCCCACGC
GCGAGTCTTGCTCCCTCCTTTTCTGAAGGCTTGTAGGGATCCCTTTCCAC
ATGCCCGGCTCGCAGGGCTGAAGGCAGCGGCAGCCTGCATCACTTACTTC
GACCCCCAAAGCATGGCAACCAAGGTCCTGCCCGTGGTGGCCAGCCTTCT
CATCGACGTTGACGGGGCTGTGCGCGATGCGGCCTTTCATTGCCAGGATG
TCTTCATCAAGGCCCTCCAAGCGCACGCCCAGAAGATGAAGGAAGACGAG
GACAAGCGCCAGAGCCACACGCTTGGCAAGCAAGCGGGGGGAGGAGAAGG
GTCCGAAAGCCTGTCCTCCTCAGTGCTCGGTGCGAGCGCTGCCAGCCTGG
GAGGGCTCACTTCTTCTGTTGCCGCCTGGGGGGCGCAGAGGATGTGGACC
TCGCCTGTGCGCTCTTTGAGCCACAGTGGGAGCAGTGGGGTTGATCGCGA
CGACCTCGTTTCTAAAGAACTTTGCGAAGCTAGCATGAAGGGCGGCACGA
GCGGGCCCAAGCAAAACGAGGATGATTTTTTCGACACTCTCGCTCCCTCC
GCCCCCGGGAGTCGCGTGGCCGCAGCTGCTTCTGAGGACTGGGGCATTTT
AACGGAGGGGGTGAAGGAGAATGGCTGGACGATGGATGATGATGACGAGA
TCCTGGGTATGCAATCATCTTTTGGTACACGTAGCGCTGGCGAGAAGGAG
AATACCTCCTTGTCCGTCAGCGGCCTTCCAAGGGTTTCCGAGAAGACGGA
ACATGCAGGAAGAGCGATCGGGCCAACAACGGCACGAAAAGCGTCCCCGT
TGACGCTGGGAGGCTTTAGTAAGGGAACTACTGCGCCGCTCGGAGGGACA
GGGACACTTAGGCCTGTGACGGACGACGACCTCTTCAGCATGCTCAACGA
TCCCAGCCCAGCTCCACCCTCAAAGCACAACCTAATGGCCATGCAACCGA
GTCTGAAAATCCCTTTGTCTATCAAAGATGGTACAGCTGTCTCGTCGCCA
TTGTCTGTTTCGCTGCCTGAGTCGGGACCGAAGAAAGCAATCGGAACGGG
ACGGTCACGCCTGCAAGCGAAGAAGCTTGTGGCGTCTAAGACCAGCGACT
GGGACGACTTTTGAGAAATTATCCTGAGCGTAAATGCACCACATTAATTA
CATAAATTAAAGTAACTTGTAATAGACGTGTCTCCTCGACCTGAGGCCCT
GTCC

Coding sequence (CDS) from alignment at CM002463.1:948633..951436-

>rna4576 ID=rna4576|Name=rna4576|organism=Nannochloropsis gaditana|type=CDS|length=2658bp|location=Sequence derived from alignment at CM002463.1:948633..951436- (Nannochloropsis gaditana)
ATGTTAAAGGCAATGTGTTTCTTCATCTCTTCCCATTCCCTTTCCGCAGT
ACGTGCAGTCAGTAGAAACGGAAACGCACGCCGCGCGCGAAGCCAAGCAG
CGATGGGCCAAGCGGCCTCTTTCCCATTTGAGGTATCAGAGCCAGCCGAT
GCTTCGCATTCAGCACGTAATCGTGAAGCCTATTGGAAGCATTTCAAAGG
GCGGCGCAAAGCGGATCAAGCAGAGGTTTCCATTCATAAGCTGGACAAGG
TTAGCACGCCTCAGCTGAAGGTCGAGGCAGGCCTTCATGGATTCCAAAAG
ATGAAGACAATGCGACATCCATACATTCTCCAGTATTTGGATGGTGTGGA
TTTGGAAAAAGAAGTGATTCTGGTTACCGAATCAGTGACGCCACTAGGAG
AATGGTTGGCTGGACTGAAAGCAGAATTTCGCGAGGAGCAAGTAGCTTGG
GGCCTTCGATGCATCTCGGCTGCCCTGGACTTCTTGACGGGATCCCCGCG
CCACATGACGCACGGCATGGTCTGCAGCCAGAATATTTTTGTGACCAAAG
CAGGAGACTGGAAATTAGGAGGGCTTGATCTGCTCTGCGAGTGGCGCGAG
GGCGGCAAGGACATTTTTCACTTCCAGCTTCACGAGGCCTTGCTTCCTGC
CCAATACCGTGCACCCGAGCGTCGAAGCAATGACATGAGGGCGATGCTGA
AGGGTTTCCCGGGTGCCCTTGATATTTGGGCCTTGGGAATTCTGATTGGG
GAGGTTGTAGAGCAAAGTCAAGGCAAGCCCCCATCTGGAGCACTGGCTAG
CATCCAACGCCGGCTCCTTTCGGGGGACAGCTCGGATCGACCCTCGGCCG
GTCAAATCTTGCGGCATTCATACTTCTCACCAAGAGGTACTAAGGAGCTG
ATACGCGTGCTCGATTTTTTGGAAAATTTTTCTTTAAAAGAGGACGGGGA
GAAGATGGATTTTTTCAACAGCCTCGTTCAGTCGGTAGCGCGGTTACCCC
CGGAGGTCGGGCTCCACAAAATATTGCCCACCTTCCGGGATTACGTGCAC
GTCGGAGTCGGGGGTAATGTCTCTAACACGCAAGTCCCCGATCAAGCGCT
TGTGCAGCAGCAAGCGCGACAACGTCAACTTGTGCTGGCTGCCCTGCCCG
TGTGCCTGGAGATCCTGAAGAGCCTCGACGATGCTGCCTTCGCGGACATG
GGGGAGCCTCTACTCGTCAGCCTCTTTGGAATGAACGACCGGGCGATCCG
GGCAATGCTCCTGCAGCATCTCCAACCGCTGGCGAGCAAGCTTTCACAGA
ACAACATCAACGGGCGGCTCTTCGACTCCGTGCTGACGGGTTTCGCCGAC
AGCGCTCCGCAGCTCCGAGAGCTGACCCTCAAATCCATGCTCAGCTTCAG
CCATCGCCTCAACGAGAAGAATCTCAACGATCGCCTCATGCGTTGCCTCA
CAAAGCTCCAAGTGGACCCCGAGCCCTCCATCCGTACCAACACAACCATC
TTCCTGGGCCGCATCGCCGCACAACTCAAAGGCGGCTCCCACGCGCGAGT
CTTGCTCCCTCCTTTTCTGAAGGCTTGTAGGGATCCCTTTCCACATGCCC
GGCTCGCAGGGCTGAAGGCAGCGGCAGCCTGCATCACTTACTTCGACCCC
CAAAGCATGGCAACCAAGGTCCTGCCCGTGGTGGCCAGCCTTCTCATCGA
CGTTGACGGGGCTGTGCGCGATGCGGCCTTTCATTGCCAGGATGTCTTCA
TCAAGGCCCTCCAAGCGCACGCCCAGAAGATGAAGGAAGACGAGGACAAG
CGCCAGAGCCACACGCTTGGCAAGCAAGCGGGGGGAGGAGAAGGGTCCGA
AAGCCTGTCCTCCTCAGTGCTCGGTGCGAGCGCTGCCAGCCTGGGAGGGC
TCACTTCTTCTGTTGCCGCCTGGGGGGCGCAGAGGATGTGGACCTCGCCT
GTGCGCTCTTTGAGCCACAGTGGGAGCAGTGGGGTTGATCGCGACGACCT
CGTTTCTAAAGAACTTTGCGAAGCTAGCATGAAGGGCGGCACGAGCGGGC
CCAAGCAAAACGAGGATGATTTTTTCGACACTCTCGCTCCCTCCGCCCCC
GGGAGTCGCGTGGCCGCAGCTGCTTCTGAGGACTGGGGCATTTTAACGGA
GGGGGTGAAGGAGAATGGCTGGACGATGGATGATGATGACGAGATCCTGG
GTATGCAATCATCTTTTGGTACACGTAGCGCTGGCGAGAAGGAGAATACC
TCCTTGTCCGTCAGCGGCCTTCCAAGGGTTTCCGAGAAGACGGAACATGC
AGGAAGAGCGATCGGGCCAACAACGGCACGAAAAGCGTCCCCGTTGACGC
TGGGAGGCTTTAGTAAGGGAACTACTGCGCCGCTCGGAGGGACAGGGACA
CTTAGGCCTGTGACGGACGACGACCTCTTCAGCATGCTCAACGATCCCAG
CCCAGCTCCACCCTCAAAGCACAACCTAATGGCCATGCAACCGAGTCTGA
AAATCCCTTTGTCTATCAAAGATGGTACAGCTGTCTCGTCGCCATTGTCT
GTTTCGCTGCCTGAGTCGGGACCGAAGAAAGCAATCGGAACGGGACGGTC
ACGCCTGCAAGCGAAGAAGCTTGTGGCGTCTAAGACCAGCGACTGGGACG
ACTTTTGA

Synonyms

Publications