rna4558, rna4558 (mRNA) Nannochloropsis gaditana

Overview
Namerna4558
Unique Namerna4558
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2168
Alignment locationCM002463.1:911757..913152 +

Link to JBrowse

Properties
Property NameValue
ProductNucleic acid-binding, OB-fold-like protein
Orig transcript idgnl|cribi|Naga_100014g36.9297.mrna
Orig protein idgnl|cribi|Naga_100014g36.9297
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:911757..913152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100014g36gene4397Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4558rna4558-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26120.1cds4546Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4558 ID=rna4558|Name=rna4558|organism=Nannochloropsis gaditana|type=mRNA|length=2168bp
CTACTCAGACAGAAAGTGTGCTCGGGCATCAATTGTGCCTTCTAGAGAAG
AAAGTAAGAAGTTACCTTGAGAGGAATGTCCTCGACGGCAACCCCTCGTG
CTCTCACACGAGACAAACCGGGGACCTTAAGGAGTAGCCTTTCGGCTAAA
TTGAACAATAAAGCCAGAGCTATAACACCCACACGCGGAAAACAATCGAT
AAGAGAAAATACGCCGCTGAAACGAGTCCAAAAAGAGCGTCAGGACCTGG
ATGCCATCAATCATGCAAATGCATTGATCCGCCTTGATGCAATTCAAGGG
GCTCGTGAGGCCAAGATCAATGTGAAGACGGGTGTGTCAAAAGAGGTGGC
GCGCCTTCAAGATCAGGCAGCAATGTACTTCAGGCGTATTCAGGTGGAAA
GGGTACGAAGCGCAATAAAACCATCACAATATCTAATCAGAAACTCACTC
GCTAGCTTTATATTTGCACCATAGCGCAAGGTGGCAGAGCTAGAAGAGCA
AGTAAATACTGCACAAATGAAAGTCCTCGAGCAAAAACAGAAGATGGGAG
GTGTAAATGCGTCAAAAGAAAATGACGCAATACTCGCAAAGCAAACTCAA
CTCCTCGAAAATCGACTAGATAAAACGTTGGTGAAATTTAATCAGGCTCT
AGGAGAGAATAAGAGGCTTAGAGAACGAATCGACCGCCTACGTATGGATC
GAGTTGTCTACGACAATGTTTACAAGCGACTAGAACGATGCCTTCACGAA
AAGAAGAAAGAGATGGCGCAAGTTATAGAGGACGCAAAACGGGTCTGCGT
CGCGAGGGATAAGGCAAAGAGCGAAATTAATAATCTTAAGCAGCAGGCTG
AAAAAGAAAAAGCCCAATTTCAAAGAGAGTGGGCAGAGTTGGGCCGTTTG
ATTGAAGAGGATCGGCAGGCTAGGGATTCCATACAGAAAACGATGGAAGC
CGAGCGACGGAGCCAACGTCTCTCGGAGCAGTCGCATCGTTCCAAGAGCC
CAGCAGGAAGAACTGGCCTGGTGACAAGTAAGCCAAGAGATAACTCCTCT
GGTAATTCACCAATGGATGTGAACAAGCAATCAAAAGGGGATGAGAGTGG
CATTCCTGGTGAAGTCGTCAGTCCCGATAGGAACGCTCTCAATGAGAAGT
CAAGCAGCGCCACTGCATCCGCAGTCCCACTATCATCATCCGGTGCAACG
ACGGCTCCTTTACTGTCCCTCACACCCGAGAAAATACGACTATATGAAGA
GGTTTTCGCCCAAGTACAAGAAGCAACGGGACTCACTGATATTGAAGAGA
TGGTCACGAAATTTCTTGAAGCTGAAGAGAAGAATTTTTCGCTGTTTAAC
TATGTCAATGACCTAAACACGGAAATCGATGAACTGGAATCCTTCATTGG
AGAGAATAAAAATGAAATAGAGAAAAATAAAGACCAGGGTAGCAACGCTG
ACTCCAGGCAGAAACGCTTGGCCCGGGCGGGTGAAGAACGCCAGCAGCAA
ATCAAAGCGAAAGCGGATGAGTACGAGCTCAAGTACATTGCCGCCACCAA
AGCCATTAATCAGCTAAAAACGAGCATACACTCAATCTTTTCACGGTTAG
GTTGTGCGACTACAACCCCCATGGAGGAGATTCTGGGAAACCAGGGCGTA
ACAGAGTCAAATATGATGCAATATTTGGGCTTCATCGAACAGCGTACTAT
CGAAATCCTTCAACTCTATCGTGCGAGACAGAGCAGAGATGCTACTAGCT
CATTAAATGAAGCCGCTCACTCATCATCAACACCATTTCGCATTACCGTC
CAGCCTCCCTCCCTATCGGAAATAGAGCGTGACGAGGAGGCTGCGACGCA
GCCGCATGCCCAAGCCACCAAATTCAGAGGTTATACTGTGAGTAAGACTA
TCAAAAGCATAAATCATCCATCATTTGAAGAGGATGATGCAGAAGATCGG
CCCTTAACGAGGCAAGAGTTGCAGGAAAAAGCCGTATCAAGTGCTGTGGG
TAAATCGAAGCAGCAGAAAAGCAGTATGAGGCCTTGTGATGAACGACAAG
CCATTTAAAGCCAAGAAAAGATGTCCTAAAATTTACACATTTCTATGAAA
GGTGTTTCTCCCCATCGTTTATTTAAGTCACGACGAATTGGAATGTGCGT
CTTGGCATGTGTATCAGG
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protein sequence of rna4558

>rna4558-protein ID=rna4558-protein|Name=rna4558|organism=Nannochloropsis gaditana|type=polypeptide|length=364bp
MQITRGGKIFTTQDGRKGQHKKVTNIRKRKHPATNLAAAVEDVAPQQHVS
LTPRHYTVSIAVAGSIVLNAQSPELRTYLVGEIARAAAIFQVDEIVVFGD
SSGASPSYNWGDPNLFFGRLLQYIETPQYLRKAIFPHHSDLRFAGILNPL
DAPHHPRAHENLVYREGVTVDTPANSAGGSLVNVGLRNYVHLDRRLKPGV
RVTVKLISSDPVGGSGQKHQQRPHELSGVAVSPAAPRETAGLYWGYTTRL
AKNLTEVFAQSPFKGGYDVTVGTSERGHQSIEDADFVLPAFKHLLVVFGG
VAGLEACVEGTAELGLSASETHTLFDVWLNTCPDQGSRTIRTEEAVPITM
ARLRPFIVKAGKND
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mRNA from alignment at CM002463.1:911757..913152+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4558 ID=rna4558|Name=rna4558|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp|location=Sequence derived from alignment at CM002463.1:911757..913152+ (Nannochloropsis gaditana)
AGCGAGTTAACTACGGCAAGTATGCAGCCGCCTGTTTCTATCAACATGTG
CGGTGTGAGGGTCAAGATTGTTAATCGCCTTTTCCCCTACTTCTTATATC
TTGAAAAATGTTACCCTGCAGAGAGCAGCCCTGCCCAGTATCCATTCACT
CCTTGGTCGAGCCGCCGGCAGCTAGCATTAGGAGGAGCCCCCAAAATAGT
TCAGTTCGTGAAGTTCGCACATACAGACCACGACCACCCCAAGTCAATTA
TAAATCAATCAAGTGATAATAAAGAGCGGGGGTATCATGCAGAtaacaag
aggagggaaaatttTCACTAcgcaggatgggaggaaagggcagcACAAAA
AAGTGACGAACATCAGGAAGCGCAAACATCCCGCTACGAATCTTGCCGCG
GCCGTTGAGGATGTGGCACCACAGCAACATGTATCCCTTACTCCCCGTCA
TTATACTGTTTCAATAGCAGTGGCGGGCTCGATAGTACTCAATGCGCAAT
CACCGGAATTGCGGACGTATTTAGTAGGGGAGATCGCCCGAGCGGCCGCA
ATTTTTCAAGTAGATGAGATTGTGGTGTTTGGGGACAGCTCAGGAGCGAG
TCCCTCCTATAATTGGGGGGATCCCAACTTGTTCTTTGGGCGCCTTTTAC
AGTACATCGAAACTCCTCAGTATCTTCGCAAGGCCATCTTCCCACATCAC
TCGGACCTTCGTTTTGCAGGCATTCTGAACCCTCTAGATGCCCCTCACCA
CCCGCGGGCCCACGAGAACCTCGTGTATCGTGAAGGTGTAACGGTTGATA
CCCCCGCGAACAGCGCTGGAGGGTCTCTGGTCAACGTGGGATTACGCAAC
TATGTGCACTTAGACCGTCGCCTCAAGCCGGGAGTCCGCGTGACTGTAAA
GCTAATCTCCTCCGACCCTGTCGGCGGCTCGGGACAGAAGCATCAACAGC
GTCCTCATGAGTTGTCCGGTGTTGCGGTTTCTCCCGCAGCTCCTCGTGAG
ACCGCGGGGCTCTACTGGGGCTACACCACCCGCTTAGCCAAGAATCTGAC
CGAGGTCTTCGCGCAGAGCCCTTTCAAGGGAGGCTACGATGTGACTGTGG
GCACATCGGAACGAGGCCATCAAAGCATTGAGGACGCAGACTTTGTATTG
CCCGCCTTCAAGCACCTTCTGGTGGTGTTCGGAGGGGTGGCGGGCCTGGA
GGCCTGTGTGGAGGGGACGGCGGAGCTTGGTCTGTCCGCGAGCGAGACGC
ACACACTCTTCGACGTATGGCTGAACACGTGTCCCGACCAGGGGAGCCGA
ACCATCCGTACCGAGGAGGCTGTGCCCATCACCATGGCTCGGCTGCGGCC
CTTCATCGTCAAGGCTGGAAAGAACGATTAGATGAGAACCCTTAGG
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Coding sequence (CDS) from alignment at CM002463.1:911757..913152+

>rna4558 ID=rna4558|Name=rna4558|organism=Nannochloropsis gaditana|type=CDS|length=1095bp|location=Sequence derived from alignment at CM002463.1:911757..913152+ (Nannochloropsis gaditana)
ATGCAGAtaacaagaggagggaaaatttTCACTAcgcaggatgggaggaa
agggcagcACAAAAAAGTGACGAACATCAGGAAGCGCAAACATCCCGCTA
CGAATCTTGCCGCGGCCGTTGAGGATGTGGCACCACAGCAACATGTATCC
CTTACTCCCCGTCATTATACTGTTTCAATAGCAGTGGCGGGCTCGATAGT
ACTCAATGCGCAATCACCGGAATTGCGGACGTATTTAGTAGGGGAGATCG
CCCGAGCGGCCGCAATTTTTCAAGTAGATGAGATTGTGGTGTTTGGGGAC
AGCTCAGGAGCGAGTCCCTCCTATAATTGGGGGGATCCCAACTTGTTCTT
TGGGCGCCTTTTACAGTACATCGAAACTCCTCAGTATCTTCGCAAGGCCA
TCTTCCCACATCACTCGGACCTTCGTTTTGCAGGCATTCTGAACCCTCTA
GATGCCCCTCACCACCCGCGGGCCCACGAGAACCTCGTGTATCGTGAAGG
TGTAACGGTTGATACCCCCGCGAACAGCGCTGGAGGGTCTCTGGTCAACG
TGGGATTACGCAACTATGTGCACTTAGACCGTCGCCTCAAGCCGGGAGTC
CGCGTGACTGTAAAGCTAATCTCCTCCGACCCTGTCGGCGGCTCGGGACA
GAAGCATCAACAGCGTCCTCATGAGTTGTCCGGTGTTGCGGTTTCTCCCG
CAGCTCCTCGTGAGACCGCGGGGCTCTACTGGGGCTACACCACCCGCTTA
GCCAAGAATCTGACCGAGGTCTTCGCGCAGAGCCCTTTCAAGGGAGGCTA
CGATGTGACTGTGGGCACATCGGAACGAGGCCATCAAAGCATTGAGGACG
CAGACTTTGTATTGCCCGCCTTCAAGCACCTTCTGGTGGTGTTCGGAGGG
GTGGCGGGCCTGGAGGCCTGTGTGGAGGGGACGGCGGAGCTTGGTCTGTC
CGCGAGCGAGACGCACACACTCTTCGACGTATGGCTGAACACGTGTCCCG
ACCAGGGGAGCCGAACCATCCGTACCGAGGAGGCTGTGCCCATCACCATG
GCTCGGCTGCGGCCCTTCATCGTCAAGGCTGGAAAGAACGATTAG
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Synonyms
Publications