rna4524, rna4524 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4524
Unique Name	rna4524
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	690
Alignment location	CM002463.1:827624..829906 +

Link to JBrowse

Properties


Property Name	Value
Product	Mitochondrial carrier domain protein
Orig transcript id	gnl\|cribi\|Naga_100014g2.9294.mrna
Orig protein id	gnl\|cribi\|Naga_100014g2.9294
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:827624..829906 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100014g2	gene4366	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4524	rna4524-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26117.1	cds4513	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:827624..829906+
coding sequence from alignment at CM002463.1:827624..829906+

mRNA sequence

>rna4524 ID=rna4524|Name=rna4524|organism=Nannochloropsis gaditana|type=mRNA|length=690bp
ATGGCTGCCCCTGTACTCACGATGGAGCATATAAGGCAAGATCTTGCCCG
AAAACCGCCGCCTGAGCCCTCAACCATCTCGGCGGATGAATGCCATGCCA
GTCTACGTGACTTGGCCCTGTGTCTGCTCTTTCAGCAGCAACTATGCCTA
CAAAAAAAAATCAGCAATTACAACTTTGCCGGCATTGACAGTGTAGACGA
GCGCTTTGTCCAGGCGCTGAAATCGGAGCATGGAAGCACCATCCGAGCCT
TGGTTGAGGCGACGACGGCTCTATCGATCTCGACGCATGAAGAGGGCAAA
TGGCGGGGGGAGGACGGGCCCCTGATGGCTGTCCTATGGGAGGAGCAGGA
TGAAGTCGAAGAAGATGGGGCGGCACAGGAGAATCGGGGGACAAAGGACC
GGTATTTGGCATTGTTAGAAAGGCACGAGCTCCTTCCCGTGTGCATTTCT
CTCCCCGTCTCGCCCCCCTCCTCCTGCTATCAGAGCGACACCGCCCGCAC
AAGCAGCGATGAGAGCGAACATCAGAGCATGAGGGACATTGAGCGGGACA
GCCTGGTAGTCAACGGCGCACCCTACAAGCCTGGTGGCGTCGGCGGGCAC
ATGCGCGTCTTGTCCTGGTTGAAACACGTGGTGCAAACGCAGCTGGGAAG
CACAGGGTGCCCGCATGCTTTGGGAGAGGAGCCCGTCTGA

protein sequence of rna4524

>rna4524-protein ID=rna4524-protein|Name=rna4524|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MELPRGGRRQPSRRKGRMALNNLPTMPPFECITIILGMLCSCLVSLQAFD
VPRPPVLGSKAQPRAWRSSPRGQGITKPLMMTRRWNPQTVEGSHEPLPVA
ASVLRLNDRNSSDDKDPLGRSNHTLSTPLDRTRAPCRDKSQHEMEYFDGE
QRPGISMKHARVLQGIAVLGLVVGGIVLVGATENFQHAPETALLLPPSYS
FQKSLLAGAAAGVSRGLSRIVTFPLDTIKTRQQAVLLRQHSEGEGSRGEG
QGAEAASREGDRFEAVAKRASNVKKGNLFDGLLPMLLIAGPANAAFFVTY
DYLGALATALGAPPKGHLFIELAASLLASLPSNLIRIPAEVTKQRVQAGQ
APKAVVAAATILKTEGPLGLYVGGGAHLLREIPFNAVQFLAYRNLKDVLV
ATQGGTPASVSAKAILGAAAAGLASLCTQPLDTVKTAQMLNVKKRRALEG
ELREKEEVEETYWGSASRIYRLFGLPGLYLGSAPRFSLCAVGGAFYFFAN
EWAKNVLSTGGVHFPDMWPK

mRNA from alignment at CM002463.1:827624..829906+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4524 ID=rna4524|Name=rna4524|organism=Nannochloropsis gaditana|type=mRNA|length=2283bp|location=Sequence derived from alignment at CM002463.1:827624..829906+ (Nannochloropsis gaditana)
cctcgaaACTCTACCCATCTGGACAAAGGAAACCTCGGAAACGGAACTAG
CACATCAGTTGGGCCTAAGAGGCGTCCGTAAGCTGTGCCTGCGGCTTCTC
AGCACGTGGCTGGCGGGAAGACGCTGAGAAGCGCGTGGGGATTGATGGAG
TTGCCTCGGGGGGGCCGCCGACAGCCATCAAGAAGAAAAGGTCGCATGGC
ACTAAATAATCTGCCGACCATGCCTCCCTTCGAATGCATTACAATCATTC
TGGGCATGCTCTGCAGCTGTCTAGGTAGGTAATTTAGAACGACATAGACG
GACAAGATCTTGAAAAGCACAGGCTGCTGTGCGTCACTCCAACCATGGCA
CTTGCTTCTCAGAGAAATCATACGACTTTGCTTAAGGAAATATATGAGGT
AGGTTTCTCATCTCGACACCAATAATAGTCTCACTTCAGGCTTTTGATGT
GCCGCGCCCCCCTGTGCTGGGAAGTAAAGCTCAACCTCGTGCATGGCGCA
GCTCCCCTCGCGGTCAGGGAATTACTAAACCTTTGATGATGACGCGCCGC
TGGAACCCCCAAACGGTAGAAGGTAGCCATGAACCTCTACCTGTGGCAGC
GTCTGTCCTACGCCTGAACGATCGCAACAGTAGCGACGACAAAGACCCTC
TCGGTCGTTCAAATCACACGCTCTCTACCCCTCTCGACCGGACCCGCGCA
CCATGTCGCGACAAGAGTCAGCACGAGATGGAGTACTTCGACGGCGAACA
GAGGCCAGGAATCTCCATGAAGCACGCGCGTGTGCTTCAAGGGATCGCCG
TGCTTGGGCTGGTTGTGGGCGGCATCGTGCTCGTAGGGGCGACTGAGAAC
TTTCAGCACGCCCCCGAAACGGCGCTCttgctgcctccctcgtacTCCTT
TCAGAAGAGCTTGCTGGCCGGTGCAGCCGCGGGCGTGAGTCGAGGACTTT
CTCGCATTGTCACCTTCCCATTGGATACCATCAAGACCAGGCAGCAGGCC
GTTCTCCTTCGCCAACACTCCGAAGGAGAAGGtagccggggggaggggca
gggggcggaagcGGCATCGAGAGAGGGGGATCGCTTCGAGGCGGTGGCAA
AACGCGCGAGCAACGTGAAGAAAGGCAATCTCTTCGACGGCTTGCTGCCC
ATGCTGCTGATCGCCGGGCCCGCGAATGCCGCCTTCTTTGTCACCTACGA
CTACCTGGGAGCTTTGGCCACCGCCCTGGGGGCCCCGCCCAAAGGCCACC
TCTTCATCGagctggccgcctccctcttggcgTCCTTGCCGTCCAATTTG
ATCCGGATCCCCGCCGAGGTGACCAAGCAACGAGTGCAAGCTGGGCAGGC
TCCGAAGGCTGTGGTGGCCGCAGCCACGATTTTGAAGACGGAGGGCCCGC
TGGGCCTCTATGTCGGCGGAGGTGCGCATCTCCTTCGAGAGATTCCCTTC
AATGCCGTCCAGTTCTTGGCCTACCGCAACCTCAAGGACGTCCTGGTGGC
CACTCAGGGGGGGACGCCTGCCTCGGTTTCTGCGAAAGCCATtctggggg
cggcggccgcggggCTCGCGAGCCTGTGCACACAGCCGCTTGACACTGTC
AAGACTGCTCAAATGCTGAacgtgaagaaaagaagagccttggaagggga
gctgcgggaaaaggaagaggttgaGGAGACGTACTGGGGGAGCGCGTCGC
GAATCTATCGCTTGTTTGGCCTGCCAGGACTTTACTTGGGGTCGGCTCCC
AGATTCTCCTTGTGCGCGGTGGGAGGTGCGTTCTATTTCTTTGCAAATGA
GTGGGCAAAGAATGTCCTAAGCACAGGTGGTGTGCATTTCCCGGACATGT
GGCCCAAGTAGTAGTCCGAGCGCTGCGGCGCAAGTTGACACAGAGGTGGG
CTGCGGCAGGGACGGCGGCTGGAGTGGTCGTTAACGGCACACGGTTGTAA
TTGTACAATACGGACATGCGAAGGCAATGTGTGTGAAAAAGAGGAACGTA
GGAGGCCTTTCCGAGAGGGTCATGTTAAAATGATTGGTCGGAACGCAAGA
ATTTCGATTGAGTCGTGCGGTGAACCAGAACTCACCCACAAGGTGCTTGC
TGGAAACATAAAATCAGAGTGTAAAGTTGCGAATCGAACTTGTAATGCAT
AAATTAAACTACAAGGGCGACGCAAACTGCGCGATACACCGCTGGAGGCG
GACTAGGACGTATGTTCGCGCTCATGCCGGATGTTGTCTTTTACTTCGCT
CGCGCGTCTACTGTTCACGTTTACTGCCATGCC

Coding sequence (CDS) from alignment at CM002463.1:827624..829906+

>rna4524 ID=rna4524|Name=rna4524|organism=Nannochloropsis gaditana|type=CDS|length=3126bp|location=Sequence derived from alignment at CM002463.1:827624..829906+ (Nannochloropsis gaditana)
ATGGAGTTGCCTCGGGGGGGCCGCCGACAGCCATCAAGAAGAAAAGGTCG
CATGGCACTAAATAATCTGCCGACCATGCCTCCCTTCGAATGCATTACAA
TCATTCTGGGCATGCTCTGCAGCTGTCTAGTCTCACTTCAGGCTTTTGAT
GTGCCGCGCCCCCCTGTGCTGGGAAGTAAAGCTCAACCTCGTGCATGGCG
CAGCTCCCCTCGCGGTCAGGGAATTACTAAACCTTTGATGATGACGCGCC
GCTGGAACCCCCAAACGGTAGAAGGTAGCCATGAACCTCTACCTGTGGCA
GCGTCTGTCCTACGCCTGAACGATCGCAACAGTAGCGACGACAAAGACCC
TCTCGGTCGTTCAAATCACACGCTCTCTACCCCTCTCGACCGGACCCGCG
CACCATGTCGCGACAAGAGTCAGCACGAGATGGAGTACTTCGACGGCGAA
CAGAGGCCAGGAATCTCCATGAAGCACGCGCGTGTGCTTCAAGGGATCGC
CGTGCTTGGGCTGGTTGTGGGCGGCATCGTGCTCGTAGGGGCGACTGAGA
ACTTTCAGCACGCCCCCGAAACGGCGCTCttgctgcctccctcgtacTCC
TTTCAGAAGAGCTTGCTGGCCGGTGCAGCCGCGGGCGTGAGTCGAGGACT
TTCTCGCATTGTCACCTTCCCATTGGATACCATCAAGACCAGGCAGCAGG
CCGTTCTCCTTCGCCAACACTCCGAAGGAGAAGGtagccggggggagggg
cagggggcggaagcGGCATCGAGAGAGGGGGATCGCTTCGAGGCGGTGGC
AAAACGCGCGAGCAACGTGAAGAAAGGCAATCTCTTCGACGGCTTGCTGC
CCATGCTGCTGATCGCCGGGCCCGCGAATGCCGCCTTCTTTGTCACCTAC
GACTACCTGGGAGCTTTGGCCACCGCCCTGGGGGCCCCGCCCAAAGGCCA
CCTCTTCATCGagctggccgcctccctcttggcgTCCTTGCCGTCCAATT
TGATCCGGATCCCCGCCGAGGTGACCAAGCAACGAGTGCAAGCTGGGCAG
GCTCCGAAGGCTGTGGTGGCCGCAGCCACGATTTTGAAGACGGAGGGCCC
GCTGGGCCTCTATGTCGGCGGAGGTGCGCATCTCCTTCGAGAGATTCCCT
TCAATGCCGTCCAGTTCTTGGCCTACCGCAACCTCAAGGACGTCCTGGTG
GCCACTCAGGGGGGGACGCCTGCCTCGGTTTCTGCGAAAGCCATtctggg
ggcggcggccgcggggCTCGCGAGCCTGTGCACACAGCCGCTTGACACTG
TCAAGACTGCTCAAATGCTGAacgtgaagaaaagaagagccttggaaggg
gagctgcgggaaaaggaagaggttgaGGAGACGTACTGGGGGAGCGCGTC
GCGAATCTATCGCTTGTTTGGCCTGCCAGGACTTTACTTGGGGTCGGCTC
CCAGATTCTCCTTGTGCGCGGTGGGAGGTGCGTTCTATTTCTTTGCAAAT
GAGTGGGCAAAGAATGTCCTAAGCACAGGTGGTGTGCATTTCCCGGACAT
GTGGCCCAAGTAGATGGAGTTGCCTCGGGGGGGCCGCCGACAGCCATCAA
GAAGAAAAGGTCGCATGGCACTAAATAATCTGCCGACCATGCCTCCCTTC
GAATGCATTACAATCATTCTGGGCATGCTCTGCAGCTGTCTAGTCTCACT
TCAGGCTTTTGATGTGCCGCGCCCCCCTGTGCTGGGAAGTAAAGCTCAAC
CTCGTGCATGGCGCAGCTCCCCTCGCGGTCAGGGAATTACTAAACCTTTG
ATGATGACGCGCCGCTGGAACCCCCAAACGGTAGAAGGTAGCCATGAACC
TCTACCTGTGGCAGCGTCTGTCCTACGCCTGAACGATCGCAACAGTAGCG
ACGACAAAGACCCTCTCGGTCGTTCAAATCACACGCTCTCTACCCCTCTC
GACCGGACCCGCGCACCATGTCGCGACAAGAGTCAGCACGAGATGGAGTA
CTTCGACGGCGAACAGAGGCCAGGAATCTCCATGAAGCACGCGCGTGTGC
TTCAAGGGATCGCCGTGCTTGGGCTGGTTGTGGGCGGCATCGTGCTCGTA
GGGGCGACTGAGAACTTTCAGCACGCCCCCGAAACGGCGCTCttgctgcc
tccctcgtacTCCTTTCAGAAGAGCTTGCTGGCCGGTGCAGCCGCGGGCG
TGAGTCGAGGACTTTCTCGCATTGTCACCTTCCCATTGGATACCATCAAG
ACCAGGCAGCAGGCCGTTCTCCTTCGCCAACACTCCGAAGGAGAAGGtag
ccggggggaggggcagggggcggaagcGGCATCGAGAGAGGGGGATCGCT
TCGAGGCGGTGGCAAAACGCGCGAGCAACGTGAAGAAAGGCAATCTCTTC
GACGGCTTGCTGCCCATGCTGCTGATCGCCGGGCCCGCGAATGCCGCCTT
CTTTGTCACCTACGACTACCTGGGAGCTTTGGCCACCGCCCTGGGGGCCC
CGCCCAAAGGCCACCTCTTCATCGagctggccgcctccctcttggcgTCC
TTGCCGTCCAATTTGATCCGGATCCCCGCCGAGGTGACCAAGCAACGAGT
GCAAGCTGGGCAGGCTCCGAAGGCTGTGGTGGCCGCAGCCACGATTTTGA
AGACGGAGGGCCCGCTGGGCCTCTATGTCGGCGGAGGTGCGCATCTCCTT
CGAGAGATTCCCTTCAATGCCGTCCAGTTCTTGGCCTACCGCAACCTCAA
GGACGTCCTGGTGGCCACTCAGGGGGGGACGCCTGCCTCGGTTTCTGCGA
AAGCCATtctgggggcggcggccgcggggCTCGCGAGCCTGTGCACACAG
CCGCTTGACACTGTCAAGACTGCTCAAATGCTGAacgtgaagaaaagaag
agccttggaaggggagctgcgggaaaaggaagaggttgaGGAGACGTACT
GGGGGAGCGCGTCGCGAATCTATCGCTTGTTTGGCCTGCCAGGACTTTAC
TTGGGGTCGGCTCCCAGATTCTCCTTGTGCGCGGTGGGAGGTGCGTTCTA
TTTCTTTGCAAATGAGTGGGCAAAGAATGTCCTAAGCACAGGTGGTGTGC
ATTTCCCGGACATGTGGCCCAAGTAG

Synonyms

Publications