rna4508, rna4508 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4508
Unique Name	rna4508
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	678
Alignment location	CM002463.1:775311..777996 +

Link to JBrowse

Properties


Property Name	Value
Product	amine oxidase
Orig transcript id	gnl\|cribi\|Naga_100072g1.8012.mrna
Orig protein id	gnl\|cribi\|Naga_100072g1.8012
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:775311..777996 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100072g1	gene4350	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4508	rna4508-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26179.1	cds4497	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:775311..777996+
coding sequence from alignment at CM002463.1:775311..777996+

mRNA sequence

>rna4508 ID=rna4508|Name=rna4508|organism=Nannochloropsis gaditana|type=mRNA|length=678bp
ATGGCATGGGAGTTATCGCGCTCACACTTCGCCCTCATCCACGAAACTCG
TGTCCTGTCCCTTCATCAGGGCCATACGCTGCCGCCGCGGGTGTGTTATG
GTTTTCGATGTGCCTTGAGGATATTGAGCAAAACCTCCTGCCCCCTCGTG
CTTTTTTTGTTCCTGCTCCAGCTTCAGAGACGAGCTTCCATGCACCACGA
GTGGGACGAGCAAGGCCTCTTGCCAAGTGACGTTGTCGCACCACTTGCCT
ACGATGTGCACCTGGCGCTCGCGGGACCTCCCGATTTGGCCACAAAGGGA
ATGGTCGATGTCACTATCGTGGTAAAGCGGCCCACGGCAGTCGTCCGGCT
GCATTCAGTCGGATTGAATATAAACTCAGCAAGCGTAGGGTTTCCAGATG
GTACATTTACCGCAACGGAAATATATTCTACCTCTCCGCAAATAGTCGCC
ATCGACATAAAATCACCCTTGTCGATTGGTCAGTACATCTTTAATGAATG
TAAGGGACGTACATCTACCTTTCGGAGAGTCGAAGCTAGCCGTAGGGGAA
GAATATGCCCTGTATTCACTGCCAAAACTGGATATCATCTGTTTGCCGCA
GGTGCACGGCTTGGGAATGGAGGGCTGGGGGGCGATTACCATCTTAAAAG
ACTACCTCCTCGTCTCTCCCACCACTAG

protein sequence of rna4508

>rna4508-protein ID=rna4508-protein|Name=rna4508|organism=Nannochloropsis gaditana|type=polypeptide|length=816bp
MLLRCARWGSAELAAAIIYVCLVVVFASSVEAKPASHRWSGTASRNLAFL
PRFSGQRSSVVTPRTTPPPMTMPDGASRFSGSTGLHANLITTFLDSLFGP
SKSSKRGLNITETHEVVVIGAGVAGLVAAKTLAAEGKDVVVVEAANQVGG
RVQTDEYKGFLLDRGFQVFIEAYPAVKRQLDYQALDLQSFWPGALVRADG
GFHTVADPFRRPQDLIKGLLAPVGSLGDKVKVGLLRVQATLTPLRAIFDS
AETDTLTHLSKTKGLSPAIIERFFTPFYQGIYLAPLAEQSSRMFDFVFRM
FAEGGISLPARGIRAVPEQLAATLPKGSLQLGVAAVRVGRGFVELSDGRV
LGAEALIVATEEGTARKLLKKELVRERPKPLGGRGSTCLYYAVPGPAPIR
EPLLVLNGESAALGGRPGTTSGGTGGGTAGAAKTAGIRTGRTSARGAKKA
GTASPFPSPSYPRPASRYPVNNVVFLSNIAPTYAPPGQTLVSVTVVGTPA
VNDAVLDKAVREQLGDWFGREAVLGQWELLRIYRIPYAQPRQVPPTGPSF
VLPAAVHWAQAGEGGEGLFVAGDYRNTATLNGAFESGERAAKAVLAHLAA
HPPGEERRQGIEGGTLRKETGEDGDGRGGKRMPDSEAQPSLAASSSSTST
SALPSRPSMPRRSHRGQDATEAFARFRQENERGRSTIQGVVSGMEGRRGS
PIVSRFREVSEARQSPAVAEKDMARARAAALRVVAPQPASSVVDEGFNLS
RFRSDRDERKRIIMEKTAFTAPKEGMRQMTSSPAFTPSPAASTSATLRSS
GVRSDASSGRESRFRD

mRNA from alignment at CM002463.1:775311..777996+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4508 ID=rna4508|Name=rna4508|organism=Nannochloropsis gaditana|type=mRNA|length=2686bp|location=Sequence derived from alignment at CM002463.1:775311..777996+ (Nannochloropsis gaditana)
GACATGCTTTTGCGATGCGCCAGATGGGGCAGTGCAGAGCTAGCGGCGGC
TATCATCTACGTCTGTTTGGTCGTTGTTTTTGCCTCAAGCGTTGAAGCCA
AGCCAGCGTCACATAGATGGAGCGGTACCGCAAGCAGGTAGGGGAAGTCG
GAAGCGAGCAAAGGACAAAGCGTGCGAAGAGGCTTAGTTGCACGAATAGT
CGCGACGCAAAGTGGATCGCGTTTTTCCTGATGCGCATGATCATACCTTT
ACAGGAATTTGGCCTTCTTACCCAGATTCAGTGGACAAAGATCCTCCGTA
GTAACGCCTCGAACGACGCCGCCTCCCATGACGATGCCTGACGGCGCCTC
TCGGTTCTCTGGATCGACTGGACTACATGCAAACCTTATCACAACCTTTT
TAGACAGTCTTTTTGGACCCTCCAAGTCCAGCAAACGGGGACTCAACATC
ACCGAGACTCACGAAGTGGTTGTGATCGGCGCCGGGGTCGCCGGGTTGGT
GGCGGCCAAGACTTTGGCGGCGGAAGGTAAAGATGTGGTGGTTGTAGAAG
CGGCCAATCAAGTGGGTGGACGGGTGCAAACGGATGAGTACAAAGGCTTT
CTCCTGGACCGGGGGTTCCAAGTCTTCATAGAGGCCTATCCCGCAGTTAA
ACGGCAGCTAGACTACCAGGCACTCGACCTTCAGTCTTTCTGGCCGGGCG
CGCTGGTACGCGCTGACGGAGGCTTTCACACCGTAGCAGACCCTTTCCGG
CGCCCGCAGGACTTGATCAAAGGCTTGCTGGCTCCAGTGGGTTCCTTGGG
TGATAAAGTAAAGGTGGGGCTCCTTCGGGTCCAGGCCACCCTCACACCGC
TGCGAGCCATCTTCGACAGTGCCGAAACAGACACGCTGACCCACCTGAGC
AAAACCAAAGGCCTGAGCCCCGCGATCATCGAGCGCTTCTTCACGCCCTT
CTACCAAGGCATCTACCTGGCCCCCTTGGCAGAGCAGTCCTCCCGCATGT
TCGACTTCGTCTTCCGAATGTTCGCCGAAGGAggcatttccctccccgct
cgcGGCATTCGGGCCGTGCCGGAGCAACTAGCCGCAACCCTGCCCAAGGG
GAGCCTGCAGCTGGGCGTGGCGGCCGTGCGCGTGGGGAGAGGCTTTGTGG
AGCTCTCGGACGGCCGGGTCCTGGGTGCGGAGGCCTTGATCGTcgccacg
gaggaagggacagccCGCAAGCTCTTGAAGAAGGAGCTGGTACGGGAGCG
GCCCAAGccgctgggagggagagggtctACCTGTCTCTACTACGCCGTCC
CAGGCCCGGCTCCCATCCGAGAACCGCTCTTGGTCCTGAACGGGGAAAGC
GCCgcgttgggagggaggccgggcacAACAAGCGGGGGCACGGGGGGCGG
CACGGCTGGAGCAGCCAAGACTGCAGGCATCCGAACGGGCAGGACGTCGG
CGAGAGGCGCCAAGAAAGCGGGCAcggcctccccttttccttctccctcg
taCCCCCGGCCCGCGTCGCGTTATCCCGTGAACAACGTGGTTTTTCTCAG
TAATATAGCCCCCACCtacgccccccccggccagACCCTGGTCAGTGTCA
CCGTCGTCGGAACGCCCGCGGTCAACGATGCCGTCCTGGACAAGGCGGTC
AGGGAGCAGCTTGGGGACTGGTTCGGACGGGAGGCAGTGCTGGGGCAATG
GGAGCTCTTGCGCATCTACCGCATCCCCTACGCCCAGCCTCGACAGGTGC
CCCCCACGGGCCCGagcttcgtcctccctgccgccgtCCACTGGGCGcag
gccggggagggcggggaggggctcTTCGTAGCGGGGGACTACAGGAACAC
GGCCACCTTGAATGGGGCATTCGAGAGTGGCGAGCGGGCAGCCAAGGCAG
TGCTGGCACATTTGGCGGCCCACCCCCCgggggaagagcgacggCAGGGc
atagagggagggaccttgCGGAAGGAGActggggaggacggagatgggag
aggcgggaaaagaatgCCCGACTCGGAGGCGCAACCCTCCCTGGctgcgt
cgtcctcctccacgagcacgtccgccctccccagccGTCCCTCCATGCCC
AGACGGAGCCACCGAGGCCAAGACGCgacggaggccttcgcgCGCTTCCG
TCAAGAGAACGAGCGGGGCCGGAGCACCATCCAGGGCGTGGTTTCTGGTA
TGGAAGGCCGCCGCGGCAGTCCAATAGTGTCGCGTTTCAGAGAGGTCAGT
GAGGCCCGTCAGTCGCCCGCGGTGGCTGAAAAGGATATGGCGAGAGCGCG
CGCAGCTGCCTTGCGGGTCGTAGCGCCACAGCCGGCGTCGAGtgtggtgg
acgagggatTCAACCTGTCACGGTTTCGAAGCGACCGTGACGAGAGGAAA
CGCATCATCATGGAGAAAACTGCATTTACCGCGcccaaggagggaatgag
gcaAATGACATCATCTCCAGCCTTCACTCCGTCACCTGCCGCGTCGACCA
GTGCTACATTACGAAGCAGTGGAGTCCGCAGCGATGCAAGTAGCGGTCGA
GAATCACGCTTTCGAGATTAGTTTGGAGTGACCAGTTCTTGATGCGAATG
AATTCGAAGTGTTCTATGATATGTTCTTAAATGTTGTGGTATTTGAAAGA
ATTACATTTATGCCACAGTTGTGCATTTCGCTTCGA

Coding sequence (CDS) from alignment at CM002463.1:775311..777996+

>rna4508 ID=rna4508|Name=rna4508|organism=Nannochloropsis gaditana|type=CDS|length=4902bp|location=Sequence derived from alignment at CM002463.1:775311..777996+ (Nannochloropsis gaditana)
ATGCTTTTGCGATGCGCCAGATGGGGCAGTGCAGAGCTAGCGGCGGCTAT
CATCTACGTCTGTTTGGTCGTTGTTTTTGCCTCAAGCGTTGAAGCCAAGC
CAGCGTCACATAGATGGAGCGGTACCGCAAGCAGGAATTTGGCCTTCTTA
CCCAGATTCAGTGGACAAAGATCCTCCGTAGTAACGCCTCGAACGACGCC
GCCTCCCATGACGATGCCTGACGGCGCCTCTCGGTTCTCTGGATCGACTG
GACTACATGCAAACCTTATCACAACCTTTTTAGACAGTCTTTTTGGACCC
TCCAAGTCCAGCAAACGGGGACTCAACATCACCGAGACTCACGAAGTGGT
TGTGATCGGCGCCGGGGTCGCCGGGTTGGTGGCGGCCAAGACTTTGGCGG
CGGAAGGTAAAGATGTGGTGGTTGTAGAAGCGGCCAATCAAGTGGGTGGA
CGGGTGCAAACGGATGAGTACAAAGGCTTTCTCCTGGACCGGGGGTTCCA
AGTCTTCATAGAGGCCTATCCCGCAGTTAAACGGCAGCTAGACTACCAGG
CACTCGACCTTCAGTCTTTCTGGCCGGGCGCGCTGGTACGCGCTGACGGA
GGCTTTCACACCGTAGCAGACCCTTTCCGGCGCCCGCAGGACTTGATCAA
AGGCTTGCTGGCTCCAGTGGGTTCCTTGGGTGATAAAGTAAAGGTGGGGC
TCCTTCGGGTCCAGGCCACCCTCACACCGCTGCGAGCCATCTTCGACAGT
GCCGAAACAGACACGCTGACCCACCTGAGCAAAACCAAAGGCCTGAGCCC
CGCGATCATCGAGCGCTTCTTCACGCCCTTCTACCAAGGCATCTACCTGG
CCCCCTTGGCAGAGCAGTCCTCCCGCATGTTCGACTTCGTCTTCCGAATG
TTCGCCGAAGGAggcatttccctccccgctcgcGGCATTCGGGCCGTGCC
GGAGCAACTAGCCGCAACCCTGCCCAAGGGGAGCCTGCAGCTGGGCGTGG
CGGCCGTGCGCGTGGGGAGAGGCTTTGTGGAGCTCTCGGACGGCCGGGTC
CTGGGTGCGGAGGCCTTGATCGTcgccacggaggaagggacagccCGCAA
GCTCTTGAAGAAGGAGCTGGTACGGGAGCGGCCCAAGccgctgggaggga
gagggtctACCTGTCTCTACTACGCCGTCCCAGGCCCGGCTCCCATCCGA
GAACCGCTCTTGGTCCTGAACGGGGAAAGCGCCgcgttgggagggaggcc
gggcacAACAAGCGGGGGCACGGGGGGCGGCACGGCTGGAGCAGCCAAGA
CTGCAGGCATCCGAACGGGCAGGACGTCGGCGAGAGGCGCCAAGAAAGCG
GGCAcggcctccccttttccttctccctcgtaCCCCCGGCCCGCGTCGCG
TTATCCCGTGAACAACGTGGTTTTTCTCAGTAATATAGCCCCCACCtacg
ccccccccggccagACCCTGGTCAGTGTCACCGTCGTCGGAACGCCCGCG
GTCAACGATGCCGTCCTGGACAAGGCGGTCAGGGAGCAGCTTGGGGACTG
GTTCGGACGGGAGGCAGTGCTGGGGCAATGGGAGCTCTTGCGCATCTACC
GCATCCCCTACGCCCAGCCTCGACAGGTGCCCCCCACGGGCCCGagcttc
gtcctccctgccgccgtCCACTGGGCGcaggccggggagggcggggaggg
gctcTTCGTAGCGGGGGACTACAGGAACACGGCCACCTTGAATGGGGCAT
TCGAGAGTGGCGAGCGGGCAGCCAAGGCAGTGCTGGCACATTTGGCGGCC
CACCCCCCgggggaagagcgacggCAGGGcatagagggagggaccttgCG
GAAGGAGActggggaggacggagatgggagaggcgggaaaagaatgCCCG
ACTCGGAGGCGCAACCCTCCCTGGctgcgtcgtcctcctccacgagcacg
tccgccctccccagccGTCCCTCCATGCCCAGACGGAGCCACCGAGGCCA
AGACGCgacggaggccttcgcgCGCTTCCGTCAAGAGAACGAGCGGGGCC
GGAGCACCATCCAGGGCGTGGTTTCTGGTATGGAAGGCCGCCGCGGCAGT
CCAATAGTGTCGCGTTTCAGAGAGGTCAGTGAGGCCCGTCAGTCGCCCGC
GGTGGCTGAAAAGGATATGGCGAGAGCGCGCGCAGCTGCCTTGCGGGTCG
TAGCGCCACAGCCGGCGTCGAGtgtggtggacgagggatTCAACCTGTCA
CGGTTTCGAAGCGACCGTGACGAGAGGAAACGCATCATCATGGAGAAAAC
TGCATTTACCGCGcccaaggagggaatgaggcaAATGACATCATCTCCAG
CCTTCACTCCGTCACCTGCCGCGTCGACCAGTGCTACATTACGAAGCAGT
GGAGTCCGCAGCGATGCAAGTAGCGGTCGAGAATCACGCTTTCGAGATTA
GATGCTTTTGCGATGCGCCAGATGGGGCAGTGCAGAGCTAGCGGCGGCTA
TCATCTACGTCTGTTTGGTCGTTGTTTTTGCCTCAAGCGTTGAAGCCAAG
CCAGCGTCACATAGATGGAGCGGTACCGCAAGCAGGAATTTGGCCTTCTT
ACCCAGATTCAGTGGACAAAGATCCTCCGTAGTAACGCCTCGAACGACGC
CGCCTCCCATGACGATGCCTGACGGCGCCTCTCGGTTCTCTGGATCGACT
GGACTACATGCAAACCTTATCACAACCTTTTTAGACAGTCTTTTTGGACC
CTCCAAGTCCAGCAAACGGGGACTCAACATCACCGAGACTCACGAAGTGG
TTGTGATCGGCGCCGGGGTCGCCGGGTTGGTGGCGGCCAAGACTTTGGCG
GCGGAAGGTAAAGATGTGGTGGTTGTAGAAGCGGCCAATCAAGTGGGTGG
ACGGGTGCAAACGGATGAGTACAAAGGCTTTCTCCTGGACCGGGGGTTCC
AAGTCTTCATAGAGGCCTATCCCGCAGTTAAACGGCAGCTAGACTACCAG
GCACTCGACCTTCAGTCTTTCTGGCCGGGCGCGCTGGTACGCGCTGACGG
AGGCTTTCACACCGTAGCAGACCCTTTCCGGCGCCCGCAGGACTTGATCA
AAGGCTTGCTGGCTCCAGTGGGTTCCTTGGGTGATAAAGTAAAGGTGGGG
CTCCTTCGGGTCCAGGCCACCCTCACACCGCTGCGAGCCATCTTCGACAG
TGCCGAAACAGACACGCTGACCCACCTGAGCAAAACCAAAGGCCTGAGCC
CCGCGATCATCGAGCGCTTCTTCACGCCCTTCTACCAAGGCATCTACCTG
GCCCCCTTGGCAGAGCAGTCCTCCCGCATGTTCGACTTCGTCTTCCGAAT
GTTCGCCGAAGGAggcatttccctccccgctcgcGGCATTCGGGCCGTGC
CGGAGCAACTAGCCGCAACCCTGCCCAAGGGGAGCCTGCAGCTGGGCGTG
GCGGCCGTGCGCGTGGGGAGAGGCTTTGTGGAGCTCTCGGACGGCCGGGT
CCTGGGTGCGGAGGCCTTGATCGTcgccacggaggaagggacagccCGCA
AGCTCTTGAAGAAGGAGCTGGTACGGGAGCGGCCCAAGccgctgggaggg
agagggtctACCTGTCTCTACTACGCCGTCCCAGGCCCGGCTCCCATCCG
AGAACCGCTCTTGGTCCTGAACGGGGAAAGCGCCgcgttgggagggaggc
cgggcacAACAAGCGGGGGCACGGGGGGCGGCACGGCTGGAGCAGCCAAG
ACTGCAGGCATCCGAACGGGCAGGACGTCGGCGAGAGGCGCCAAGAAAGC
GGGCAcggcctccccttttccttctccctcgtaCCCCCGGCCCGCGTCGC
GTTATCCCGTGAACAACGTGGTTTTTCTCAGTAATATAGCCCCCACCtac
gccccccccggccagACCCTGGTCAGTGTCACCGTCGTCGGAACGCCCGC
GGTCAACGATGCCGTCCTGGACAAGGCGGTCAGGGAGCAGCTTGGGGACT
GGTTCGGACGGGAGGCAGTGCTGGGGCAATGGGAGCTCTTGCGCATCTAC
CGCATCCCCTACGCCCAGCCTCGACAGGTGCCCCCCACGGGCCCGagctt
cgtcctccctgccgccgtCCACTGGGCGcaggccggggagggcggggagg
ggctcTTCGTAGCGGGGGACTACAGGAACACGGCCACCTTGAATGGGGCA
TTCGAGAGTGGCGAGCGGGCAGCCAAGGCAGTGCTGGCACATTTGGCGGC
CCACCCCCCgggggaagagcgacggCAGGGcatagagggagggaccttgC
GGAAGGAGActggggaggacggagatgggagaggcgggaaaagaatgCCC
GACTCGGAGGCGCAACCCTCCCTGGctgcgtcgtcctcctccacgagcac
gtccgccctccccagccGTCCCTCCATGCCCAGACGGAGCCACCGAGGCC
AAGACGCgacggaggccttcgcgCGCTTCCGTCAAGAGAACGAGCGGGGC
CGGAGCACCATCCAGGGCGTGGTTTCTGGTATGGAAGGCCGCCGCGGCAG
TCCAATAGTGTCGCGTTTCAGAGAGGTCAGTGAGGCCCGTCAGTCGCCCG
CGGTGGCTGAAAAGGATATGGCGAGAGCGCGCGCAGCTGCCTTGCGGGTC
GTAGCGCCACAGCCGGCGTCGAGtgtggtggacgagggatTCAACCTGTC
ACGGTTTCGAAGCGACCGTGACGAGAGGAAACGCATCATCATGGAGAAAA
CTGCATTTACCGCGcccaaggagggaatgaggcaAATGACATCATCTCCA
GCCTTCACTCCGTCACCTGCCGCGTCGACCAGTGCTACATTACGAAGCAG
TGGAGTCCGCAGCGATGCAAGTAGCGGTCGAGAATCACGCTTTCGAGATT
AG

Synonyms

Publications