rna4468, rna4468 (mRNA) Nannochloropsis gaditana

Overview
Namerna4468
Unique Namerna4468
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1320
Alignment locationCM002463.1:658281..659903 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g21.7510.mrna
Orig protein idgnl|cribi|Naga_100025g21.7510
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:658281..659903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g21gene4310Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26219.1cds4457Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4468rna4468-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4468 ID=rna4468|Name=rna4468|organism=Nannochloropsis gaditana|type=mRNA|length=1320bp
ATGGTTAATAGCCACGTAAACCGCAAAAGCCCGGAAAGGTATGGAAGAGG
ACAAGAGCGTCTAGCCAAAGAAGCAAAACTTGTACAGAAACATTCTTACG
ACAATCAGCTGCATGCAAGCCCCATAAAGTCAATGAAGACAAAGTATTAT
GCCGTGAAGGTGCCCATGCGCGCCATTTTTACCTCCTGGTCCGAATGCCA
CGCAGTGGTGAACGGGGCAGGAAACGCTACCTTCAAGTCTTTCTCGTCAT
TAGATGAGGCCAGGGCGTTTGTGGAAGATGGCCTTGAATCACAACAATAC
ACAGGAAAGAAGAGCAGCAGGGAAAGCCATGGTTTGCAGATTTTTTCAGA
GCAGGATCTCAAGGATTGTGGGATGCTTCAAGAGGGGATTGATGAAGAGC
GGGAGCAAAATATCGAAGGCTTATATGCAAATAGTGGGGCAGAAACACGA
AAAGAATATATGGAAAGATCGTCCACTCCGCACACTGACATGGATAATCA
TGTGTGCGGGACAGGAGGCGCTCGTTGTGCAGCCAATGAGGAACGAAGGA
AACGGAAGAGGACGAAAGAGGAACATGCACAGGACGTAAGCCAGGAACAA
GACGCTTTTGCCCAGGAATGCGGTGACGCTCCATTGACAGGTCGCCTGGG
ATCCAGAATAGGAGGCGGTTCTATTTGTACAGTTGGCATGAATGAGCTAG
CCGGAGAGGGCCGTGGCGACCAGGAAAATGAAGATGATGACTTCGACGAT
GAAAGCTCCCGAGTGACAGAGCCAATACCCGCCATCATTCTTTCCCCCAA
TGATACATCTCCCAACATTCCTAGCGAAGACGTTTCCGCGACTGCTCTCC
TCCAGAGGCGGCCGCGCTTCGTCGATGCGGGAGTTTTGTTTTTCGATGGT
GGGGCTCGGGGCAATCCGGGCGTCTCCGGCGGCGGTGCAGTCATGTTCGA
CTGCGACAACAAGCAATTGTGGACTCTTTCCGTGTTCCTGGGCTCCGATA
AAACCAACAACCAAGCGGAATATTTGGCGCTTTATCACGGCTTGGAGGAG
GCGGCCCGTAGGGGGGTCAGGACCCTCCACGCCCGAGGGGACTCACTGCT
GGTGATCCGGCAGATGGAAGGCGTGTGGAAGGTGAAGAACAAAGCAATCA
TGCGCCTCCACGCGCAGGTCAAAGCCTTGGCGCGCCGTTTTCGCGCGCTC
ACCTTCCAGCACGTCCCCCGGGCCGAAAACACAGTGGCAGACGCCTTGGC
CAACGCCGCCATGGACAAGAGGCACTCGATCCCCGTCGTGGAGGAGGCGG
GTCTGGGCTTAGATTGCTAG
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protein sequence of rna4468

>rna4468-protein ID=rna4468-protein|Name=rna4468|organism=Nannochloropsis gaditana|type=polypeptide|length=411bp
MPVRNRSAASITAIAVLALVGALYLRRQALKKKKQEAENASEDKSHATPH
YQISILGDTFCDVVVQGIKNLPEWGTDALTDAPIELTPGGSACNSALQLA
SLLRLFPLESYITPQVVLHTALGDDSFGSFLREKIKAAVQGQYVRISTSS
SLEEASRKESSGSMPNKETANATTGVCICLSGSEDRAFITHRGVVATFSG
DQLDVSTIYRSQFIHIAGYYNCPSLWRILPGLLRDCQSRGIFTSLSPQCD
ASGKWEGGLHDTLPHLDLFVPNEMEALAISRQNGIVDACRYFVESGVKHV
IVTLGAEGAFASVKEGERRREMRQTCPLKEIVDTTGAGDAFNAGVLYSLL
TDLVGKNAAPGNGTTESWEWGQALRMGCAMGGHNVTKAGASAPPRDQLEI
IDNLKEIRCDV
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mRNA from alignment at CM002463.1:658281..659903-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4468 ID=rna4468|Name=rna4468|organism=Nannochloropsis gaditana|type=mRNA|length=1623bp|location=Sequence derived from alignment at CM002463.1:658281..659903- (Nannochloropsis gaditana)
AGTTGCCTGCGGCAAAACTACTAGTAGACGGTAAAGCACATCATTTCATC
CTTTTGCTCAATGCCGATGCTTGCGGGACATCACTTTTCTTTTCCCTTTT
GTACCGAACCAAAAAATTCTTCTTCGACGTTGTACCGTAAAGCATAATGC
CATCGTGGCGTGCTTCTTTCTTTCACAGGGGCAATAACCTCCCCACCCTC
TCCTGCTTTGCTGTTGTTAATTCTTTTACAGGAATACTTGCACACCGCAA
ATTGATATTATAACATCCATGATAGTCTGATAGTCTTTTGTTTCTACATT
GTTCAAGGTATGCCTGTGAGAAATCGCTCCGCGGCGTCCATTACAGCGAT
TGCCGTGCTTGCTCTAGTAGGAGCTCTGTACCTTCGTCGTCAGGCACTCA
AAAAGAAAAAACAAGAAGCGGAGAACGCGTCAGAAGACAAATCCCACGCC
ACGCCACATTATCAAATCTCGATTCTTGGGGATACCTTTTGCGATGTCGT
GGTTCAAGGCATCAAAAATTTGCCCGAATGGGGAACAGACGCTCTGACCG
ACGCCCCAATAGAACTGACTCCGGGGGGCTCTGCCTGCAACTCCGCGCTG
CAACTCGCCAGCTTGCTGCGCTTATTTCCTCTAGAATCCTATATTACACC
CCAGGTGGTGTTGCACACAGCTTTAGGAGACGACTCATTTGGATCCTTCT
TGAGGGAAAAAATTAAGGCCGCGGTGCAAGGCCAATATGTACGGATTTCC
ACCTCCTCATCCCTCGAAGAAGCTTCCAGGAAAGAGTCGTCTGGATCCAT
GCCCAACAAAGAAACCGCAAATGCAACAACGGGTGTGTGTATTTGCCTCT
CCGGGTCTGAGGACCGTGCGTTCATTACCCATCGGGGAGTCGTCGCCACC
TTCAGTGGCGATCAACTCGACGTCTCCACCATCTACAGGAGCCAATTCAT
ACACATTGCCGGCTACTACAACTGTCCATCGCTCTGGCGTATTCTGCCAG
GGCTGCTACGTGATTGTCAGTCACGAGGCATTTTTACAAGCCTCAGCCCG
CAGTGCGACGCGTCGGGCAAGTGGGAGGGTGGCCTCCATGACACGTTACC
CCACCTGGATTTATTTGTGCCCAACGAGATGGAGGCTTTGGCAATCTCCA
GACAAAATGGGATTGTGGACGCATGTCGCTACTTTGTAGAGAGTGGGGTG
AAACATGTAATCGTCACGTTGGGGGCGGAGGGAGCTTTCGCATCTGTGAA
GGAAGGGGAGAGGCGCCGCGAAATGAGGCAGACATGTCCGCTCAAAGAAA
TTGTAGATACCACAGGCGCAGGGGACGCTTTTAATGCAGGAGTCTTGTAC
AGCCTTTTGACGGATTTGGTGGGAAAAAACGCGGCCCCGGGGAACGGGAC
AACGGAGTCGTGGGAATGGGGACAGGCCTTGCGGATGGGATGCGCCATGG
GCGGCCACAATGTGACCAAAGCGGGCGCGTCGGCGCCTCCGCGGGATCAA
CTGGAAATAATTGACAATTTGAAGGAAATTAGGTGTGATGTATAGTTTTT
CCACGCGGCGGACTTCATCATTGGTAATAAAAATCGAAGTCATCTAGAGC
AAGCGTCCCGACAATGTCAGACT
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Coding sequence (CDS) from alignment at CM002463.1:658281..659903-

>rna4468 ID=rna4468|Name=rna4468|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002463.1:658281..659903- (Nannochloropsis gaditana)
ATGCCTGTGAGAAATCGCTCCGCGGCGTCCATTACAGCGATTGCCGTGCT
TGCTCTAGTAGGAGCTCTGTACCTTCGTCGTCAGGCACTCAAAAAGAAAA
AACAAGAAGCGGAGAACGCGTCAGAAGACAAATCCCACGCCACGCCACAT
TATCAAATCTCGATTCTTGGGGATACCTTTTGCGATGTCGTGGTTCAAGG
CATCAAAAATTTGCCCGAATGGGGAACAGACGCTCTGACCGACGCCCCAA
TAGAACTGACTCCGGGGGGCTCTGCCTGCAACTCCGCGCTGCAACTCGCC
AGCTTGCTGCGCTTATTTCCTCTAGAATCCTATATTACACCCCAGGTGGT
GTTGCACACAGCTTTAGGAGACGACTCATTTGGATCCTTCTTGAGGGAAA
AAATTAAGGCCGCGGTGCAAGGCCAATATGTACGGATTTCCACCTCCTCA
TCCCTCGAAGAAGCTTCCAGGAAAGAGTCGTCTGGATCCATGCCCAACAA
AGAAACCGCAAATGCAACAACGGGTGTGTGTATTTGCCTCTCCGGGTCTG
AGGACCGTGCGTTCATTACCCATCGGGGAGTCGTCGCCACCTTCAGTGGC
GATCAACTCGACGTCTCCACCATCTACAGGAGCCAATTCATACACATTGC
CGGCTACTACAACTGTCCATCGCTCTGGCGTATTCTGCCAGGGCTGCTAC
GTGATTGTCAGTCACGAGGCATTTTTACAAGCCTCAGCCCGCAGTGCGAC
GCGTCGGGCAAGTGGGAGGGTGGCCTCCATGACACGTTACCCCACCTGGA
TTTATTTGTGCCCAACGAGATGGAGGCTTTGGCAATCTCCAGACAAAATG
GGATTGTGGACGCATGTCGCTACTTTGTAGAGAGTGGGGTGAAACATGTA
ATCGTCACGTTGGGGGCGGAGGGAGCTTTCGCATCTGTGAAGGAAGGGGA
GAGGCGCCGCGAAATGAGGCAGACATGTCCGCTCAAAGAAATTGTAGATA
CCACAGGCGCAGGGGACGCTTTTAATGCAGGAGTCTTGTACAGCCTTTTG
ACGGATTTGGTGGGAAAAAACGCGGCCCCGGGGAACGGGACAACGGAGTC
GTGGGAATGGGGACAGGCCTTGCGGATGGGATGCGCCATGGGCGGCCACA
ATGTGACCAAAGCGGGCGCGTCGGCGCCTCCGCGGGATCAACTGGAAATA
ATTGACAATTTGAAGGAAATTAGGTGTGATGTATAG
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Synonyms
Publications