rna4453, rna4453 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4453
Unique Name	rna4453
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2126
Alignment location	CM002463.1:628599..630529 -

Link to JBrowse

Properties


Property Name	Value
Product	wd repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100025g37.7508.mrna
Orig protein id	gnl\|cribi\|Naga_100025g37.7508
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:628599..630529 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100025g37	gene4296	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26217.1	cds4442	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4453	rna4453-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:628599..630529-
coding sequence from alignment at CM002463.1:628599..630529-

mRNA sequence

>rna4453 ID=rna4453|Name=rna4453|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp
ATGCTTGGTAGTCGGCAGTCGCCCTATTCCTCCATGGGGCAGTACGGCCC
CCGACGGAACTATTCTACCTACGGTCGGCCATCAGCCAGGCTGCCACATC
TACGCTTGGATACCACGCTAGTATTGCTCGTTGTATGCTTCTTCATGGGA
ATGTATTTGCCGGGTTGGATGGGAATGGCGCCCACTGAGTCGCTTGGACG
GGGCAACGACGGTTCTATGAGCCGCGAAAACTTCGCTGTAAGTACCCCTG
ACTTGCTGGAGAGAGTTCAAATTTTGAAGGCTCGCATGACGGACGCCGAA
AAGAAAGCTGCTGCTGTCCTCGAAGAAAATCAAAAACTCCGACTGGACAA
CGAAATTGAGCAGGCAAACCTCAAGACTTTGACCAAAGCCAAGAATGAGG
AGATCAGGGGACTTCAGGCCCGAATAGACAGCACCGAAGAAAAGTTGGAT
GCGACCAAAAAACAGAATGTAGATGGCAATGAGAAAGAGGAGCTTCACAA
GACAAGATCTGAGATAAAAGATATGGAAGACCAAATCAAAAGCCTCAAAA
AACAGCTGGAGCTCGCATCGCAGAAGAGTCCTTCGGATAGTACCCACCAG
CATGAGAAGGCAGCCGCGGGCAGTATTCCTTCATCGAAAAAGGAACCAAA
GAAATCGGAGGTAGTTGACGTTGTCAAGAAACCGCTTTTGACTCGGAAAA
CCGTGTCCGTACCCGAGCCCCAACCGTTAAATCCTTTGTGGGAGGCACGC
TTGCACGCGCTCTTTGACCTCGCTCAGTCGGACCCGGCCTCCCTTCTCTC
CAAACTCGACGATTCCAACGCCGATCCACTGGGCGTGAATGTTGGCGGTC
CGACCAACTTTACTTGCCCCCCTCCCAGCGAGAGATTGACGCAGCCGGAC
CTCCGACGCATAGAAGTGGCCACCCAGTTTCGCGGCGGCCACGGCTTTGT
GTTCTTCCAGCACCTCAGGAAAGCGGGGGGCACGGGGTTTTGCGACATGG
CGTCACGAAACATGCCCGGGCACGTTCCTTCCTACTACTGCATGCCGGAC
CACCGGGGAACCCTGGCCACGCCTCCATGGACTACCTCTTGGCTGCTGGA
TACGATTGAGGAGAAGAGCTTCCGGATCGCCGCCAACGAGTGGGACCCCT
TCCTCCGCGCCTGGTTTGCGATTGGCGATGCCGTCTTCGCCACTACCATA
CGCGATCCCACCGACCGCTGGTACAGCCAATACCGTTTTGAGCACGTGGA
GCATCGGGACGGCACCACCCAAAACAGCGTGCCCAAGCCCTTCGATGTCT
GGTACGGACAGGAGCACTCCCGCAACATGGGCCACAATTACTACGTCAAG
ACGTTCCTGGGCGAGGCCACGGAGACCGAGCCGTTGCAGAGGAAGGGGCC
GAACGGGGTCCCTCTCGTTCATGGAAACTTCTACTGGGCATACAACAAGT
ACCAGGCCCGAGTGCTGACCTGGGAGGATTTCCGGATGGCGATGGATACC
TTGCTTCGTTTTCACGTGGTGCTGGTGATGGAATGGTTGGATGAGGCAAA
CGCCACCATGAAAAGCACTCTGGGCTGGACGGAGGCCCCCCGGCAGATCT
TGCCGCATGAGGTCCAGGCGGCGCGGCAGGAGAAGAAGAGTAAATCCGCC
CGGGCTCTGTTGGACAAAAAAGTCTTTGACAGCACACGCGAGGCCAATGT
GCTGGACCACCTCTTTTTCGAAGCGGCCCGACGGATTTTCCTGGAGAGAC
ATGCGTGCGAGAGCGCCTGAGGGGAATGCATAGATAGAGTGGATGGATAG
AGAGCAGACGGCGTGTAGCCGATTAAAAGGCATTTTGCCTACAAAGGATG
CTAAATTTTAGAAAGCCCGTGAAACTGCGGCCATGGGGCATGCTCGTGAT
AAGCGCCCGTGAAAGAATCAAAATCCCTCAACGTGAATAGACCATGCAGG
TCCTGTTACCCCCACCCAAGGCTGACGGGTTTCGGGCGGCATGCTTTCCT
TCGGACGTGTTATCCCTGGCCAGGTTCCTAAGGAACAGTCCACCCCTCTG
TGCGCATGTCACGGTGCGGCTGCCGCTGCATCTCATGCTGCCATCAGGCT
TAAAACGACGACTCTTACGTGAAAGC

protein sequence of rna4453

>rna4453-protein ID=rna4453-protein|Name=rna4453|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MPVLQDERQHHSSETFSGSSCPSPPSPPLSPPALLVSSAAAEECARKTSN
HSARLQDLSEVSMNPENVQAEEEEDGGQPQCAPEAGPYQAAGSLGKQRRA
VSSLKFSGSGELLAAASADTTISIWDPKKRLLVRELKGGHTQGVSDVAWA
RDSQYLASASDDKTVRIWDTETGQELGRFIGHTGYVFCVTFNAQGSLLAS
GSADESVHLWDLRAGSCLRTLAAHAEPVTGVDFNEEGTCLVSGSYDGLVR
LWNVGMGHCLKTLFAEGAPAVSHVRYAPNGRSVLVSTLDSTVRLWKVASP
SAVTKTYQGHQNLRLCTFACYCAPDGAAASGQGHKNGPQYVSSGSEDGKV
YVWDVQSQALVQTLGGHQDAVLSLAAHPTDGVLASGGTTADRSIRLWRPR
CNGAD

mRNA from alignment at CM002463.1:628599..630529-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4453 ID=rna4453|Name=rna4453|organism=Nannochloropsis gaditana|type=mRNA|length=1931bp|location=Sequence derived from alignment at CM002463.1:628599..630529- (Nannochloropsis gaditana)
GGAGTTTCCTCAACTTGACCCCTCGCGGCCTTAGCTCAACTCAATCGTAC
CAAAGCCATCCTTCCCTCAGGAATGCCATACCGCGGATACACACACACAG
GATCACTTAAAAGCATAGCATGCCAGTGCTGCAAGATGAACGTCAGCATC
ACTCGTCGGAAACGTTCTCGGGGTCCAGCTGTCCGAGCCCTCCGTCACCT
CCCCTCTCTCCACCTGCTCTACTTGTTTCAAGTGCTGCCGCAGAGGAATG
CGCACGAAAGACATCGAATCATTCAGCAAGATTGCAAGATTTGTCGGAGG
TATCCATGAATCCCGAAAACGTACAGGCTGAGGAGGAAGAGGACGGGGGG
CAGCCACAGTGCGCTCCGGAAGCGGGACCTTATCAGGCTGCAGGTAGCCT
CGGCAAGCAACGTAGAGCTGTTTCGTCCCTCAAGTTCTCAGGCTCCGGAG
AGCTTCTGGCCGCAGCCTCGGCTGACACGACCATCAGCATATGGGACCCG
AAAAAGCGATTGCTAGTGAGGGAGTTGAAAGGGGGTCATACGCAAGGCGT
CTCCGATGTGGCATGGGCGCGCGACAGCCAATATCTTGCCTCTGCTAGCG
ACGACAAGACTGTCCGGATCTGGGACACGGAGACCGGCCAGGAATTAGGG
AGGTTTATCGGGCATACGGGGTACGTGTTTTGCGTGACTTTCAATGCTCA
AGGCTCCCTTCTGGCCTCGGGCTCGGCCGACGAGAGTGTCCACCTCTGGG
ACTTGCGGGCCGGGAGCTGCTTGCGGACGCTGGCGGCACACGCTGAGCCC
GTGACGGGGGTCGATTTTAACGAAGAGGGCACGTGTTTGGTCTCGGGATC
GTACGACGGCCTGGTGCGGCTGTGGAACGTAGGTATGGGGCACTGCCTCA
AGACCCTCTTCGCTGAGGGGGCGCCCGCCGTCTCCCACGTGAGGTATGCA
CCCAACGGGAGAAGTGTCCTGGTTTCCACGTTGGATTCGACCGTCAGGCT
CTGGAAGGTGGCCAGTCCCAGTGCCGTGACGAAGACCTATCAAGGCCATC
AAAACCTGCGGCTTTGTACCTTCGCTTGCTATTGCGCACCGGACGGGGCG
GCGGCTTCGGGGCAGGGACATAAGAATGGGCCTCAATATGTATCTAGCGG
ATCCGAGGACGGCAAGGTTTATGTGTGGGATGTGCAAAGCCAGGCTCTCG
TTCAGACGCTGGGCGGGCATCAGGATGCGGTGTTGAGCCTAGCAGCCCAC
CCCACCGACGGAGTCTTGGCCTCGGGGGGAACGACAGCAGACAGGTCGAT
ACGGCTTTGGCGCCCACGATGTAACGGGGCCGATTGAAAGTGAAATTACG
GTTTGGCCGATTGAAAGTGAAATTACGGTTTCGGATGTGTGCAGGTCGGG
AGGGGCTGGCAGCCGCAGCGAAGAAAAGCTGGGGTCAGTGTTGTGGAGAA
CGGAGACTGGCGCGGCCTCCACGAATGTACAAAGAAATTAGAAACATGCA
AGTATCGAACATGTGGGCTTCTTGCTTGATTTGCATGCGGACGGCGGTTT
GATGCATAGCTTTCACGTAAGAGTCGTCGTTTTAAGCCTGATGGCAGCAT
GAGATGCAGCGGCAGCCGCACCGTGACATGCGCACAGAGGGGTGGACTGT
TCCTTAGGAACCTGGCCAGGGATAACACGTCCGAAGGAAAGCATGCCGCC
CGAAACCCGTCAGCCTTGGGTGGGGGTAACAGGACCTGCATGGTCTATTC
ACGTTGAGGGATTTTGATTCTTTCACGGGCGCTTATCACGAGCATGCCCC
ATGGCCGCAGTTTCACGGGCTTTCTAAAATTTAGCATCCTTTGTAGGCAA
AATGCCTTTTAATCGGCTACACGCCGTCTGCTCTCTATCCATCCACTCTA
TCTATGCATTCCCCTCAGGCGCTCTCGCACG

Coding sequence (CDS) from alignment at CM002463.1:628599..630529-

>rna4453 ID=rna4453|Name=rna4453|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at CM002463.1:628599..630529- (Nannochloropsis gaditana)
ATGCCAGTGCTGCAAGATGAACGTCAGCATCACTCGTCGGAAACGTTCTC
GGGGTCCAGCTGTCCGAGCCCTCCGTCACCTCCCCTCTCTCCACCTGCTC
TACTTGTTTCAAGTGCTGCCGCAGAGGAATGCGCACGAAAGACATCGAAT
CATTCAGCAAGATTGCAAGATTTGTCGGAGGTATCCATGAATCCCGAAAA
CGTACAGGCTGAGGAGGAAGAGGACGGGGGGCAGCCACAGTGCGCTCCGG
AAGCGGGACCTTATCAGGCTGCAGGTAGCCTCGGCAAGCAACGTAGAGCT
GTTTCGTCCCTCAAGTTCTCAGGCTCCGGAGAGCTTCTGGCCGCAGCCTC
GGCTGACACGACCATCAGCATATGGGACCCGAAAAAGCGATTGCTAGTGA
GGGAGTTGAAAGGGGGTCATACGCAAGGCGTCTCCGATGTGGCATGGGCG
CGCGACAGCCAATATCTTGCCTCTGCTAGCGACGACAAGACTGTCCGGAT
CTGGGACACGGAGACCGGCCAGGAATTAGGGAGGTTTATCGGGCATACGG
GGTACGTGTTTTGCGTGACTTTCAATGCTCAAGGCTCCCTTCTGGCCTCG
GGCTCGGCCGACGAGAGTGTCCACCTCTGGGACTTGCGGGCCGGGAGCTG
CTTGCGGACGCTGGCGGCACACGCTGAGCCCGTGACGGGGGTCGATTTTA
ACGAAGAGGGCACGTGTTTGGTCTCGGGATCGTACGACGGCCTGGTGCGG
CTGTGGAACGTAGGTATGGGGCACTGCCTCAAGACCCTCTTCGCTGAGGG
GGCGCCCGCCGTCTCCCACGTGAGGTATGCACCCAACGGGAGAAGTGTCC
TGGTTTCCACGTTGGATTCGACCGTCAGGCTCTGGAAGGTGGCCAGTCCC
AGTGCCGTGACGAAGACCTATCAAGGCCATCAAAACCTGCGGCTTTGTAC
CTTCGCTTGCTATTGCGCACCGGACGGGGCGGCGGCTTCGGGGCAGGGAC
ATAAGAATGGGCCTCAATATGTATCTAGCGGATCCGAGGACGGCAAGGTT
TATGTGTGGGATGTGCAAAGCCAGGCTCTCGTTCAGACGCTGGGCGGGCA
TCAGGATGCGGTGTTGAGCCTAGCAGCCCACCCCACCGACGGAGTCTTGG
CCTCGGGGGGAACGACAGCAGACAGGTCGATACGGCTTTGGCGCCCACGA
TGTAACGGGGCCGATTGA

Synonyms

Publications