EWM26211.1, cds4440 (CDS) Nannochloropsis gaditana

Overview
NameEWM26211.1
Unique Namecds4440
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:625017..625883 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26211.1
Productmolecular chaperone
Orig transcript idgnl|cribi|Naga_100025g39.7502.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:625017..625883 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
Homology
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|585108210|gb|EWM26211.1| (molecular chaperone [Nannochloropsis gaditana])

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MSRDCAVASQYLGVPSRSPPSKTCSQNPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNSDRERQCEGLHGRSDTSPSRKRKYGSTAASTPGKSASPKSSTTSVRKSSKSFAEVLREWENFEKQYVEELRNKQMSVEAQARKELRRSRREDVEEQQAAERRTLLAHLLANVQDDSEDDVPTALHTREGQEREIEEGLRTPRPRNTWQTFLRGRKRGRRQERVEENGARKQGI 288
            MSRDCAVASQYLGVPSRSPPSKTCSQNPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNSDRERQCEGLHGRSDTSPSRKRKYGSTAASTPGKSASPKSSTTSVRKSSKSFAEVLREWENFEKQYVEELRNKQMSVEAQARKELRRSRREDVEEQQAAERRTLLAHLLANVQDDSEDDVPTALHTREGQEREIEEGLRTPRPRNTWQTFLRGRKRGRRQERVEENGARKQGI
Sbjct:    1 MSRDCAVASQYLGVPSRSPPSKTCSQNPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNSDRERQCEGLHGRSDTSPSRKRKYGSTAASTPGKSASPKSSTTSVRKSSKSFAEVLREWENFEKQYVEELRNKQMSVEAQARKELRRSRREDVEEQQAAERRTLLAHLLANVQDDSEDDVPTALHTREGQEREIEEGLRTPRPRNTWQTFLRGRKRGRRQERVEENGARKQGI 288          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|676382589|ref|XP_009034573.1| (hypothetical protein AURANDRAFT_62223 [Aureococcus anophagefferens] >gi|323455144|gb|EGB11013.1| hypothetical protein AURANDRAFT_62223 [Aureococcus anophagefferens])

HSP 1 Score: 70.0922 bits (170), Expect = 9.843e-10
Identity = 32/71 (45.07%), Postives = 51/71 (71.83%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNII 111
            + R+L+A+N FEV+ +PV   + A V+  YRK AL +HPDK +  + ++AF RLSEA+EAL D ++Q++ +
Sbjct:  864 IERILKARNHFEVMDIPVCPCAPAIVKKLYRKLALKVHPDKCSHADGERAFKRLSEAHEALSDERAQRDAL 934          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|1004136866|gb|KXZ44898.1| (hypothetical protein GPECTOR_61g851 [Gonium pectorale])

HSP 1 Score: 63.929 bits (154), Expect = 1.478e-8
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEAL 101
            VRRVLQA + +EVLQLPV  S+   VR AYR+ A  LHPDK     AQ+AFIR + AY AL
Sbjct:  136 VRRVLQAASDYEVLQLPV-GSTAVEVRRAYRRLAASLHPDKCREEGAQQAFIRATSAYNAL 195          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|302854479|ref|XP_002958747.1| (hypothetical protein VOLCADRAFT_108284 [Volvox carteri f. nagariensis] >gi|300255922|gb|EFJ40203.1| hypothetical protein VOLCADRAFT_108284 [Volvox carteri f. nagariensis])

HSP 1 Score: 64.3142 bits (155), Expect = 6.506e-8
Identity = 44/109 (40.37%), Postives = 57/109 (52.29%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYE-----------ALRDTKSQQNIIYKLN-------------SDRERQCEGL 125
            VRRVL+A + +EVLQLPV  S+ A VR AYR+ A  LHPDK     AQ+AFIR + AY            A+    S +N+I++L+              D   QC GL
Sbjct:  105 VRRVLRAASDYEVLQLPV-GSTAAEVRRAYRRLAACLHPDKCREEGAQEAFIRAAAAYNGLLRRCGGDRSAIATNISTRNLIHQLDLVSVAPQQKAIRKPDTPDQCGGL 212          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|1129190306|gb|OLP95565.1| (Chaperone protein dnaJ 49 [Symbiodinium microadriaticum])

HSP 1 Score: 63.929 bits (154), Expect = 1.110e-7
Identity = 32/86 (37.21%), Postives = 54/86 (62.79%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQLPV-MCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIY---KLNSDRERQC 122
            + RVL+++N FEVL LP  + +  + ++ AYRK +L +HPDKN   ++  AF ++  A+E L DT+ Q+ +++   KL  D E + 
Sbjct:  216 IERVLESRNDFEVLDLPPQLITDLSILKKAYRKISLSVHPDKNKHPQSADAFRKVYGAFETLMDTRQQRRLLWILGKLTPDMEEKV 301          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|301113810|ref|XP_002998675.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262111976|gb|EEY70028.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 60.4622 bits (145), Expect = 1.833e-7
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQL------PVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQNIIYKLNS 116
            V R+L     +EVL+L      PV   +   VR  Y++ A+ +HPDKN   +A+ AF RLSEAYE L D  SQ+N + +L +
Sbjct:    9 VSRILSCNTHYEVLKLGLPDHAPVFVDA-QQVRRRYKELAIRVHPDKNPTADAEAAFKRLSEAYECLVDEASQRNYLQRLRA 89          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|551611249|ref|XP_005786717.1| (hypothetical protein EMIHUDRAFT_352279, partial [Emiliania huxleyi CCMP1516] >gi|485640019|gb|EOD34288.1| hypothetical protein EMIHUDRAFT_352279, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 58.5362 bits (140), Expect = 4.376e-7
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   41 VRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDT 104
            V R+LQA++ +EVL LP        +R A    ALL+HPDKN + +A +AF R+  AYE L  T
Sbjct:    8 VDRILQARDLYEVLNLPAFTDDVEEIRRARNDCALLVHPDKNDSPDASEAFKRVQGAYEVLMST 71          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|294878645|ref|XP_002768440.1| (molecular chaperone DnaJ, putative [Perkinsus marinus ATCC 50983] >gi|239870868|gb|EER01158.1| molecular chaperone DnaJ, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 60.8474 bits (146), Expect = 5.474e-7
Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 0
Query:   33 SDQQQRMHVRRVLQAQNAFEVLQLPVMCSSF---ATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRD 103
            +D+Q R+ V+RVL+ Q+ +++LQ+     S    A V+ AYRK AL LHPDKN+A  A++AF ++S+A++ L D
Sbjct:  106 TDEQNRL-VQRVLRTQDYYQILQIDKNDGSNDVDAKVKKAYRKLALKLHPDKNSAPGAEEAFKKVSKAFQCLSD 178          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|294876661|ref|XP_002767739.1| (molecular chaperone DnaJ, putative [Perkinsus marinus ATCC 50983] >gi|239869584|gb|EER00457.1| molecular chaperone DnaJ, putative [Perkinsus marinus ATCC 50983])

HSP 1 Score: 60.4622 bits (145), Expect = 9.156e-7
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 0
Query:   33 SDQQQRMHVRRVLQAQNAFEVLQLPVMCSSF---ATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRD 103
            +D Q R+ V+RVL+ Q+ +++LQ+     S    A V+ AYRK AL LHPDKN+A  A++AF ++S+A++ L D
Sbjct:  106 TDDQNRL-VQRVLRTQDYYQILQIDKNDGSNDVDAKVKKAYRKLALKLHPDKNSAPGAEEAFKKVSKAFQCLSD 178          
BLAST of EWM26211.1 vs. NCBI_GenBank
Match: gi|510911174|ref|XP_004833725.1| (DnaJ domain containing protein [Theileria equi] >gi|428673360|gb|EKX74273.1| DnaJ domain containing protein [Theileria equi strain WA])

HSP 1 Score: 60.077 bits (144), Expect = 9.709e-7
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 0
Query:   27 NPELHPSDQQQRMHVRRVLQAQNAFEVLQLPVMCSSFATVRTAYRKFALLLHPDKNAAHEAQKAFIRLSEAYEALRDTKSQQN 109
            NP+  PS+  +    RRVL A+  +EVL L     S  T++ +Y+K AL LHPDKN +H A +AF ++S A++ L + KS+++
Sbjct:   89 NPDTTPSEHDKL--CRRVLSAKTYYEVL-LVAREDSVDTIKRSYKKLALKLHPDKNPSHLASEAFKKVSTAFQCLTNPKSREH 168          
The following BLAST results are available for this feature:
BLAST of EWM26211.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108210|gb|EWM26211.1|0.000e+0100.00molecular chaperone [Nannochloropsis gaditana][more]
gi|676382589|ref|XP_009034573.1|9.843e-1045.07hypothetical protein AURANDRAFT_62223 [Aureococcus... [more]
gi|1004136866|gb|KXZ44898.1|1.478e-859.02hypothetical protein GPECTOR_61g851 [Gonium pector... [more]
gi|302854479|ref|XP_002958747.1|6.506e-840.37hypothetical protein VOLCADRAFT_108284 [Volvox car... [more]
gi|1129190306|gb|OLP95565.1|1.110e-737.21Chaperone protein dnaJ 49 [Symbiodinium microadria... [more]
gi|301113810|ref|XP_002998675.1|1.833e-741.46conserved hypothetical protein [Phytophthora infes... [more]
gi|551611249|ref|XP_005786717.1|4.376e-745.31hypothetical protein EMIHUDRAFT_352279, partial [E... [more]
gi|294878645|ref|XP_002768440.1|5.474e-744.59molecular chaperone DnaJ, putative [Perkinsus mari... [more]
gi|294876661|ref|XP_002767739.1|9.156e-744.59molecular chaperone DnaJ, putative [Perkinsus mari... [more]
gi|510911174|ref|XP_004833725.1|9.709e-740.96DnaJ domain containing protein [Theileria equi] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4451rna4451Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications