EWM26291.1, cds4394 (CDS) Nannochloropsis gaditana

Overview
NameEWM26291.1
Unique Namecds4394
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:509318..509914 -
Alignment locationCM002463.1:509088..509228 -

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Properties
Property NameValue
Protein idEWM26291.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100073g6.10399.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:509318..509914 -
CM002463.1supercontigCM002463.1:509088..509228 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM26291.1 vs. NCBI_GenBank
Match: gi|585108292|gb|EWM26291.1| (hypothetical protein Naga_100073g6 [Nannochloropsis gaditana])

HSP 1 Score: 491.5 bits (1264), Expect = 1.343e-175
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0
Query:    1 MQLLQSSRRSTSLLALIIFLHFISHGLHAFFLPTHVSLTHLSTKTVRSVSVAVKAAGSGSESSSPKSSPLGPVQNVKRATSKAALLLGTCIGSFDTSGAPPSQAADLTPLPPEFRTAIMAMRDAAEPLSLRDAAKAVSELPGLDELLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLILYT 245
            MQLLQSSRRSTSLLALIIFLHFISHGLHAFFLPTHVSLTHLSTKTVRSVSVAVKAAGSGSESSSPKSSPLGPVQNVKRATSKAALLLGTCIGSFDTSGAPPSQAADLTPLPPEFRTAIMAMRDAAEPLSLRDAAKAVSELPGLDELLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLILYT
Sbjct:    1 MQLLQSSRRSTSLLALIIFLHFISHGLHAFFLPTHVSLTHLSTKTVRSVSVAVKAAGSGSESSSPKSSPLGPVQNVKRATSKAALLLGTCIGSFDTSGAPPSQAADLTPLPPEFRTAIMAMRDAAEPLSLRDAAKAVSELPGLDELLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLILYT 245          
BLAST of EWM26291.1 vs. NCBI_GenBank
Match: gi|298705610|emb|CBJ28861.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.1889 bits (204), Expect = 2.893e-15
Identity = 44/128 (34.38%), Postives = 76/128 (59.38%), Query Frame = 0
Query:  118 IMAMRDAAEPLSLRDAAKAVSELPGLDE--LLYDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLIL 243
            ++ ++ A  P +L ++   ++++   DE  +L +  +  +I   L + R+   + WD+ T    G+++R ++PF+V+ L P LK+ PF+GG  Y     VQ+KF  FF  AYFGA+A  VAPA+ +IL
Sbjct:  155 VLELKKADRPDTLLNSMVKINDVVDWDEDGVLENPFAAESIVKGLIDKRRAGGEAWDSNTETAFGILKRKLDPFNVVLLRPYLKIAPFLGGAYYLAVFFVQQKFRGFFPYAYFGAVAVFVAPALIVIL 282          
BLAST of EWM26291.1 vs. NCBI_GenBank
Match: gi|873229043|emb|CEM14194.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 70.4774 bits (171), Expect = 9.832e-11
Identity = 42/135 (31.11%), Postives = 69/135 (51.11%), Query Frame = 0
Query:  113 EFRTAIMAMRDAAEPLSLRDAAKAVSEL-PGLDELL---YDDASRRAINTELKELRQERPDLWDAETSYYGGVIRRAVNPFHVLELIPLLKVGPFVGGVGYFLAIVVQRKFPRFFALAYFGAIASLVAPAVYLIL 243
            +   A+   + A    SL+ + K + EL P  D L      +   R++ T+ +E+      LW  E  +    ++R ++P   + L P L+V PF+G V Y   + VQR F ++F  AY GA A++ AP VYL++
Sbjct:  139 QLAAALQTFKTADSSESLQSSLKTLDELIPTADTLEGTPLKEEVVRSLLTKKREVLSSSKALWAGEVPFLYDDLKRKLDPLSSIALEPFLQVAPFIGVVEYLALLFVQRNFRKYFTAAYLGAAATIFAPIVYLLV 273          
The following BLAST results are available for this feature:
BLAST of EWM26291.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108292|gb|EWM26291.1|1.343e-175100.00hypothetical protein Naga_100073g6 [Nannochloropsi... [more]
gi|298705610|emb|CBJ28861.1|2.893e-1534.38conserved unknown protein [Ectocarpus siliculosus][more]
gi|873229043|emb|CEM14194.1|9.832e-1131.11unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4404rna4404Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications