EWM26314.1, cds4373 (CDS) Nannochloropsis gaditana

Overview
NameEWM26314.1
Unique Namecds4373
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:437368..437526 +
Alignment locationCM002463.1:437643..440042 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26314.1
Productfarnesyl-diphosphate farnesyltransferase
Orig transcript idgnl|cribi|Naga_100093g4.5111.mrna
GeneIDI1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:437368..437526 +
CM002463.1supercontigCM002463.1:437643..440042 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006629lipid metabolic process
GO:0009058biosynthetic process
GO:0008610lipid biosynthetic process
GO:0008299isoprenoid biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0016740transferase activity
GO:0004310farnesyl-diphosphate farnesyltransferase activity
GO:0004452isopentenyl-diphosphate delta-isomerase activity
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR019845Squalene/phytoene_synthase_CS
IPR000086NUDIX_hydrolase_dom
IPR002060Squ/phyt_synthse
IPR006449Squal_synth
IPR011876IsopentenylPP_isomerase_typ1
IPR015797NUDIX_hydrolase_dom-like
IPR008949Isoprenoid_synthase_dom
Homology
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|585108320|gb|EWM26314.1| (farnesyl-diphosphate farnesyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 1763.81 bits (4567), Expect = 0.000e+0
Identity = 852/852 (100.00%), Postives = 852/852 (100.00%), Query Frame = 0
Query:    1 MCAFLVRIKMPFLARSVVLRLTHSVHFLFPRRYDHLNNMPRFKLSSIFSPSRKKSSTNEWNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKTGRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVPTVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLPLWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHAGDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRGDSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIALVPVLALWGTESSRGGFFARPIESPAGLSGADYVQMAFNVLVSVVATLALSYVVSKVWRPLGGQGNRSRSLAA 852
            MCAFLVRIKMPFLARSVVLRLTHSVHFLFPRRYDHLNNMPRFKLSSIFSPSRKKSSTNEWNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKTGRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVPTVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLPLWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHAGDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRGDSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIALVPVLALWGTESSRGGFFARPIESPAGLSGADYVQMAFNVLVSVVATLALSYVVSKVWRPLGGQGNRSRSLAA
Sbjct:    1 MCAFLVRIKMPFLARSVVLRLTHSVHFLFPRRYDHLNNMPRFKLSSIFSPSRKKSSTNEWNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKTGRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVPTVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLPLWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHAGDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRGDSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIALVPVLALWGTESSRGGFFARPIESPAGLSGADYVQMAFNVLVSVVATLALSYVVSKVWRPLGGQGNRSRSLAA 852          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|298704820|emb|CBJ48968.1| (Isopentenyl-diphosphate delta-isomerase type 1 fused to squalene synthase; probably two separate ORFs [Ectocarpus siliculosus])

HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0
Identity = 396/705 (56.17%), Postives = 494/705 (70.07%), Query Frame = 0
Query:   60 WNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKTGRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQV-PTVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLPLWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHAGDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRGDSVSAQTLRVCE-EIRVLCKEGEASSTNTKK 762
            W+G  M+QEDFM KDE + +D+ D ++   NKY  HRF P  PRG+LHRAFSVFLFD+ G+LLLQ+RAASKITFP VWTNTCCSHPL G+  +EVD PEDL +G V GVK AA+RKL HELGI +  VP+  FKFLTRLHY+AADA T+GP A WGEHEIDY+LFIQV  ++++ P+P+EV+AVK+VSL E+  MM+ ++ L WSPWFRII ERF   WW +L   + T+ Y D   IHRF+PP    G              A   GLV  G  +A+          D+ KKQGAYGK+ +     ++QL  VDEV AAL  K    F  ++     D+DV FC DMLG+VSRSFAAVIRQLPK L  + VVFYLVLR LDTVEDDM AF  D   K++ L  F+  AL D  +K+ GVG+GDE  LLE F  V  VFQ L+ G + VI DIT+RMGAGMA+FV KDLGQGT S  +YD YCHYVAGLVG+GLTR+F  +G+E  +L  +  ELANSMGLFLQKTNIIRDYLED+VDGRAFWPQ+VWK+HA +      LG FA  + R+ ALACL+ELVT+AL  VPDCLAYM ++  P++FRFCAIPQVMAIATL ++Y+NPDVF GVVKIRKGLAC++I+E+ ++  +++ F+  A  IA R  AL    D  +++T  VC+  + +    G+A  T+  K
Sbjct:    4 WDGSGMSQEDFMVKDEVIALDEDDQIVGHVNKYLSHRFVPGTPRGILHRAFSVFLFDQDGKLLLQKRAASKITFPNVWTNTCCSHPLYGYERSEVDKPEDLKDGSVPGVKNAAVRKLAHELGIAAEDVPIDSFKFLTRLHYYAADAVTHGPNAPWGEHEIDYILFIQVDSSLSMTPHPDEVDAVKWVSLEEMDGMMNDNANL-WSPWFRIIMERFAREWWLNLNDAINTDKYMDTVNIHRFDPPAKHRG-------------GAGVTGLVEEGAKAATI---------DKSKKQGAYGKVPTIKAGKLAQLSHVDEVFAALWFKARGAF--SNNLDQEDSDVAFCNDMLGKVSRSFAAVIRQLPKMLATDIVVFYLVLRGLDTVEDDMTAFD-DIQVKIKLLTKFHETALVDRAWKLEGVGQGDERVLLERFSSVTAVFQSLSQGSQEVISDITKRMGAGMAEFVSKDLGQGTTSTVDYDEYCHYVAGLVGDGLTRLFVATGIEGQELLLA-PELANSMGLFLQKTNIIRDYLEDYVDGRAFWPQDVWKKHAKTG----QLGEFALPQFRDNALACLNELVTDALALVPDCLAYMRQIKDPEVFRFCAIPQVMAIATLAEIYNNPDVFRGVVKIRKGLACRMILESGNLEGIFSWFNKLAEGIAARVPAL----DPCASRTTEVCKIAVDMTTPTGKALGTSRTK 673          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|1210513081|dbj|GAX27897.1| (farnesyl-diphosphate farnesyltransferase [Fistulifera solaris])

HSP 1 Score: 743.036 bits (1917), Expect = 0.000e+0
Identity = 390/766 (50.91%), Postives = 514/766 (67.10%), Query Frame = 0
Query:   42 FKLSSIFSPSRKKSSTNEWNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKT-GRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVPT---VTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLP-LWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHA-----GDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFA---EAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRG--DSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIALVPVLALWGTESS 792
            F   ++F  S     +  W G+ ++Q D M KD  LVVD+ D ++ + +K + H F+ EQP G+LHRAFS+F+FD++ GRLLL QR+A KITFP VWTNTCCSHPL G TP EVD+P D+ +G V G+K AA+RKL  ELGI +    + + KFLTRLHYWAAD  T+GP++ WGEHE+DYVLF+ VP+   +T+RPNPEE+ AVK+VS  EL+ M+   + L +SPWFRII ERF+   WW DLK T+ T+ Y D  TIH+F+PP++  G                 GG   M R        P F   D  KKQGAYGKIK+HSES +SQL+R+DEV AA+ L +  P      G          D+ FC ++L +VSRSFAAVIRQLP+ + ++ +VFYL+LRALDT+EDD  AF      K+R L+ FY  AL+DP + M GVG+GDE RLLE F +  R+FQ L P  R VIKDIT+RM  GMADFV KD+GQGT  +++Y+LYCHYVAGLVGEGL+R+F+ SGLE       +  L+N MGLFLQKTNIIRDYLED+VD RA+WPQ VWK+++ S      LG FA   + E R++AL CL+ELVT+ALE VPDCLAY+S+L   +IFRFCAIPQVMAIATL+K + NPDVFTGVVKIRKGL+C+LI++ N++ ++++ FS FA  +  +A   +  G  D    +T+  C++I  L K  +A+S   ++    L +  A L  ++ +     L+G   S
Sbjct:   18 FNSLTVFGISGDSKMSASW-GKGLSQNDLMEKDTVLVVDNDDNVIGSASKKESHVFSKEQPHGILHRAFSIFIFDESDGRLLLHQRSADKITFPNVWTNTCCSHPLHGMTPNEVDSPSDVKDGSVMGIKHAAVRKLVQELGIDAKDF-IPQMKFLTRLHYWAADTITHGPSSPWGEHEVDYVLFLVVPSKDAITIRPNPEEIQAVKWVSADELEGMLKDKTCL-FSPWFRIIYERFMKNAWWKDLKTTMSTDKYVDVDTIHQFDPPSEHLGG----------------GG---MAR--------PLFAAFDASKKQGAYGKIKTHSESKLSQLMRLDEVFAAVTLLYVSPLKSNLGGEFIKNTFNSDDLAFCDEILVKVSRSFAAVIRQLPEVMLVDVLVFYLILRALDTIEDDTSAFDSH-ATKVRILKEFYK-ALDDPNWTMTGVGEGDERRLLEEFPKCQRIFQQLQPEARDVIKDITKRMADGMADFVAKDMGQGTEDMEQYNLYCHYVAGLVGEGLSRLFSASGLEHKSFGEEKH-LSNQMGLFLQKTNIIRDYLEDYVDKRAWWPQTVWKKYSASG----DLGYFANQADGEARKKALMCLNELVTDALELVPDCLAYLSKLECAEIFRFCAIPQVMAIATLDKCFANPDVFTGVVKIRKGLSCRLILQTNTIAEVHSIFSRFARSVRSKALTQQHLGANDPSFERTIASCDKITALTK--DAASLQAQRQMIRLSSTVALLGASLLVKGSAGLFGKNRS 744          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|1210516482|dbj|GAX24649.1| (farnesyl-diphosphate farnesyltransferase [Fistulifera solaris])

HSP 1 Score: 739.954 bits (1909), Expect = 0.000e+0
Identity = 391/767 (50.98%), Postives = 511/767 (66.62%), Query Frame = 0
Query:   42 FKLSSIFSPSRKKSSTNEWNGRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKT-GRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQ-VPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVPT---VTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLP-LWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHA-----GDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFA---EAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRG--DSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIALVPVLALWGTESS 792
            F   ++F        T  W G+ ++Q D M KD  LVVD+ D ++ + +K + H F+ +QP G+LHRAFS+F+FD++ GRLLL QR+A KITFP VWTNTCCSHPL G  P EVD+P D+  G V G+K AA+RKL  ELGI +   VP  + KFLTRLHYWAAD  T+GP + WGEHEIDYVLF+ VP+   +T+RPNPEE+ AVK+VS  EL+ M+   + L +SPWFRII ERF+   WW DLK T+ T+ + D  TIH+F+PP++  G                 GG   M R        P F   D  KKQGAYGKIK+HSES++SQL+R+DEV AA+ L +  P      G          D+ FC ++L +VSRSFAAVIRQLP  + ++ +VFYL+LRALDT+EDD  AF      K+  L+ FY  AL+DP + M GVG+GDE RLLE F +  R FQ L P  R VIKDIT+RM  GMADFV KD+GQGT  +Q+Y+LYCHYVAGLVGEGL+R+F+ SGLE       +  L+N MGLFLQKTNIIRDYLED+VD RA+WPQ VWK+++ S      LG FA   + E RE+AL CL+ELVT+ALE VPDCLAY+S++   +IFRFCAIPQVMAIATL+K + NPDVFTGVVKIRKGL+C+LI++ N++ ++++ FS FA  +  +A A ++ G  D    +T+  C++I  L K  +A+S   ++    L +  A L  ++ +     L+G   S
Sbjct:   18 FNSLTVFGIGGDSKMTASW-GQGLSQNDLMEKDTVLVVDNDDNVIGSASKKESHVFSKDQPHGILHRAFSIFIFDESDGRLLLHQRSADKITFPNVWTNTCCSHPLHGMMPNEVDSPADVKEGSVMGIKHAAVRKLMQELGIDAKNFVP--QMKFLTRLHYWAADTITHGPTSPWGEHEIDYVLFLVVPSKDAITIRPNPEEIQAVKWVSAEELEAMLKDKTCL-FSPWFRIIYERFMKNAWWKDLKTTISTDKFVDVDTIHQFDPPSEHLGG----------------GG---MAR--------PLFAAFDASKKQGAYGKIKTHSESMLSQLMRLDEVFAAVTLLYVSPLKSNLGGEYIKSTFNSDDLAFCDEILVKVSRSFAAVIRQLPDVMLVDVLVFYLILRALDTIEDDTSAFDSH-ATKVGILKEFYK-ALDDPNWTMTGVGEGDERRLLEEFPKCQRTFQQLQPEARDVIKDITKRMADGMADFVAKDMGQGTEDMQQYNLYCHYVAGLVGEGLSRLFSASGLEHKSFGEEKH-LSNQMGLFLQKTNIIRDYLEDYVDKRAWWPQTVWKKYSASG----DLGYFANQADDEAREKALMCLNELVTDALELVPDCLAYLSKIKCAEIFRFCAIPQVMAIATLDKCFANPDVFTGVVKIRKGLSCRLILQTNTIAEVHSIFSRFARSMRSKALAQQQLGANDPSFERTIASCDKITALTK--DAASLQAQRQMIRLSSTVALLGASLIVKGSAGLFGRNKS 744          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|397627074|gb|EJK68341.1| (hypothetical protein THAOC_10485 [Thalassiosira oceanica])

HSP 1 Score: 656.366 bits (1692), Expect = 0.000e+0
Identity = 346/666 (51.95%), Postives = 444/666 (66.67%), Query Frame = 0
Query:   66 TQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKT-GRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVKGVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPA----AEWGEHEIDYVLFIQVP---TVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFL------------PLWWADLKLTLRTNTYFDPTTIHRFEPPTDPTGNISPSE---FAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHA------GDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAE---AEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACK 699
            +Q DFM +D C+V+   D ++ + +K   H F+P QPRG+LHRAFSVFLFD++ G LLLQ+RAASKITFP VWTNTCCSHPL G    EVD PED+ +G VKG K AAIRKL HELGI + ++ +  FKFLTRLHYWAAD  T+G      + WGEHEIDYVLF+ VP   +VTL+P+P+EV+ V +VS  +L EM    + L +SPWFRII  R++              WW DL  T++T+ + D  TIHRF+PP +  G    +       D A      G++P G       +      GD  KKQGAYGK+K+H ES +SQ+L +DEV +A+ L +  P  E+++            D++FC D+L +VSRSFAAVIRQLP  L ++ ++FYLVLRALDT+EDDM  F  +   K++ L  F+  AL DP + M G G+GDE RLLE F +   V+  L  G R VI DIT RM  GMA+FVDKDLGQGT+ + +Y+ YCH+VAGLVGEGL+R+FA S LE   LA     L++ MGLFLQKTNIIRDYLED+VDGRAFWPQ +WK+++        LG FA     E ++  L CL++LVT+ALE  PDCLAY+S+L   ++FRFCAIPQVMAIATL++ YHN DVFTGVVK   G AC+
Sbjct:   11 SQSDFMLRDTCIVLSPDDDVVGSSSKKAAHVFSPGQPRGVLHRAFSVFLFDESSGELLLQKRAASKITFPNVWTNTCCSHPLHGMEVDEVDGPEDVKDGSVKGAKNAAIRKLGHELGIEADELKVEDFKFLTRLHYWAADTVTHGEKRMMNSPWGEHEIDYVLFMTVPSKESVTLKPHPDEVDDVMWVSQAKLLEMFDDKT-LLFSPWFRIITNRWVIGSTDSESGEKKAGWWDDLDRTMKTDDFCDYGTIHRFDPPEEHMGGAGDAGEWLVGGDEAVKGMENGVMPNGNNVNGEVV------GDSTKKQGAYGKVKTHKESKLSQILHLDEVWSAITLLYISPL-ESNLESPLIRETFNPLDLKFCDDILCKVSRSFAAVIRQLPSQLLVDVLIFYLVLRALDTIEDDMTYFPSNE-EKVKSLLAFHKTALVDPTWTMMGCGEGDERRLLEEFPKCHSVYAALPEGSRRVISDITLRMATGMAEFVDKDLGQGTVDVAQYNRYCHFVAGLVGEGLSRLFASSELERSALA-GELHLSDQMGLFLQKTNIIRDYLEDYVDGRAFWPQSIWKKYSAGG----DLGYFANPATEEAKKAGLCCLNDLVTDALELAPDCLAYLSKLRCAEVFRFCAIPQVMAIATLDRCYHNADVFTGVVKY--GRACR 660          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|922856370|gb|KOO24732.1| (isopentenyl-diphosphate delta-isomerase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 603.208 bits (1554), Expect = 0.000e+0
Identity = 359/780 (46.03%), Postives = 460/780 (58.97%), Query Frame = 0
Query:   62 GRNMTQEDFMRKDECLVVDDRDLLLRTENKYKCHRFTPEQPRGLLHRAFSVFLFDKTGRLLLQQRAASKITFPQVWTNTCCSHPLSGFTPTEVDTPEDLANGKVK--GVKRAAIRKLQHELGIPSFQVPLRKFKFLTRLHYWAADAATYGPAAEWGEHEIDYVLFIQVP---TVTLRPNPEEVNAVKFVSLPELQEMMHPSSGLRWSPWFRIIAERFLPLWWADLKLTLRTNTYFDPTTIHRFEPPTD--PTGNI----SPSEFAQDTAA-------SAPSGGLVPMGRASA---SPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFA-RPFPETDVGHAGDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLE----------------AP-DLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHA----------PSAVPAQS-LGAF-AEAE----------HRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRGDSVSAQTLRVCEEIRVLCKEGEASSTNTKKYARALHAAFAALLLAIAL 780
            G  M+Q +FM KDECLVV+  D ++ ++NKY  H+F   QP+G++HRAFSV LFD  GRLLLQQRAASKITFP VWTNTCCSHPL G TP EVD   ++ +GK +  G+K AA+RKL+HELG  +  +    FK++ R+HYWAAD+ T+GP   WGEHEIDY+L  Q+P   T+ L PN +EV AV +V+  EL   M   + L WSPWFR+IA   L  WW DL  + +   Y   + I RF+ P++    G +    + +E A   AA       SA    L       A     T            KQGAYGK+ +HS S   QL    E+   L LKF     P        D D+ FC   LG VSRSFAAVIRQLP  L ++ ++FY+VLR LDTVEDDM AF+     K  HLR F    L D ++ M GVG+G E  LLE F  V RVF  L    + VI+DIT +MG GMADFV  D+GQGT+S + Y  YCH VAGLVGEGL+ +F   G+E                AP D   +   +ANSMGLFLQKTNI+RDYLED+VD RAFWPQ+V K+ A          P+A  A +  GAF A+A+           R   L CL+ LV +ALE VPDCL Y+  L TP++FRFCAIPQVMAIATLE+V+ NP VFTGVVKIRKGL  +L++++ S+  +Y  F+    ++ARR A+   + D    + L+    I  L ++  A++T  K  A  +   FA     +A 
Sbjct:    5 GAGMSQHEFMLKDECLVVNYNDEIIGSDNKYNVHKFVAGQPKGIVHRAFSVMLFDDKGRLLLQQRAASKITFPHVWTNTCCSHPLHGQTPPEVD---EVYDGKTEPMGIKHAAVRKLRHELGTKAGALKAENFKYMGRVHYWAADSVTHGPNTPWGEHEIDYLLLYQMPPGTTLELAPNADEVMAVDWVTAAELTRRMEDPT-LLWSPWFRVIARELLFGWWGDLDKSFKLMPY---SPIRRFDAPSEHRKGGGVHDGAAATELADLAAAESKLEWTSAERRTLTLKSEREARRRDLTSATRSKAAAAANKQGAYGKVPTHSHSKKEQLSYPLEIACGLYLKFVPGALPLNLKVKPDDTDLLFCDVKLGEVSRSFAAVIRQLPSDLAVDILIFYIVLRGLDTVEDDMTAFKGKEHVKCEHLRAFGREYLGDEKWSMSGVGEGAERELLEGFGAVSRVFNRLPKSSQDVIRDITIQMGDGMADFVSVDMGQGTVSCEAYARYCHMVAGLVGEGLSLIFVGRGMETEACLGQGVFVWPFCKAPADKPANTLGIANSMGLFLQKTNILRDYLEDYVDNRAFWPQDVRKKFARTNDLGEFARPTAHGAGAKKGAFDAKADPLGAQIVGMGTRTTGLDCLNFLVADALELVPDCLTYLEMLKTPEVFRFCAIPQVMAIATLEEVFDNPKVFTGVVKIRKGLTARLLLDSGSLDGVYVWFN----RLARRIASRCPKNDPSREKILKATTVIVNLTQK-RATATEHKLLAMRIAVLFAICAAVMAF 772          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|223997364|ref|XP_002288355.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220975463|gb|EED93791.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 449.899 bits (1156), Expect = 3.954e-147
Identity = 237/470 (50.43%), Postives = 307/470 (65.32%), Query Frame = 0
Query:  285 LRTNTYFDPTTIHRFEPPTDPTGNISPSEFAQDTAASAPSGGLVPMGRASASPTLPPAFGKGDEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFP---ETDVGHA--GDADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAE---AEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRG--DSVSAQTLRVCE 744
            + TN + D   IHRF+PP++  G                       G   A P    A   GD  KKQGAYGK+K+H ES + QL+ +DEV +A+ L + +P     E+DV       +D+ FC ++L +VSRSFAAVIRQLP  L ++ ++FYLVLRALDT+EDDM  F  +   K++ L+ F+  AL DP +KM G G+GDE RLLE F +   V+  L  G R VI DIT+RM  GMA+FVDKDLGQGT+ +Q+Y+ YCH+VAGLVGEGL+R+F+ SGLE P LAT    L++ MGLFLQKTNIIRDYLED+VDGRAFWPQ VWK+++ S      LG FA     E     L CL+ELVT+ALE VPDCL Y+S+L   ++FRFCAIPQVMAIATLEK ++N DVFTGVVKIRKG++C LI     +  ++  F+ FA K+ R+A    K G  D    +T++ C+
Sbjct:    1 METNDFCDYVNIHRFDPPSEHMG-----------------------GGGDAGPMFDGAAVVGDASKKQGAYGKVKTHKESTLKQLVHLDEVCSAITLLYLQPLKSNLESDVIKQTFDPSDLAFCDEILCKVSRSFAAVIRQLPPTLLMDVLIFYLVLRALDTIEDDMTFFDSNED-KVKILQSFHKTALVDPNWKMMGCGEGDERRLLEEFPKCHSVYAALPEGSRRVISDITQRMATGMAEFVDKDLGQGTVDVQQYNRYCHFVAGLVGEGLSRLFSVSGLEQPSLATELH-LSDQMGLFLQKTNIIRDYLEDYVDGRAFWPQSVWKKYSSSG----DLGYFANPTTEEATNAGLYCLNELVTDALELVPDCLTYLSKLRCAEVFRFCAIPQVMAIATLEKCFNNGDVFTGVVKIRKGMSCMLINNTTDVLGVHGIFNKFATKVIRKAETARKSGFEDPSYDRTIKACQ 441          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|1072230240|gb|OEU14974.1| (Phytoene synthase [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 411.764 bits (1057), Expect = 1.394e-131
Identity = 209/415 (50.36%), Postives = 278/415 (66.99%), Query Frame = 0
Query:  349 GKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPET-DVGHAGDA----DVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAF---AEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAALEKRG--DSVSAQTLRVCEEIRVLCKEG 753
             KKQGAYGKIK+H E L  QL  +DEV +A+   + +P     D     +     D+ FC ++L +VSRSFAAVIRQLP  + ++ ++FYLVLRALDT+EDD  +F      K++HL  F+  AL DP + M GVG+ DE  LL+ FD+  RVF  L+   R VI DIT+RM  GMA+FV KDLGQGT  + +Y+ YCH+VAGLVGEGL+R+F  SGLE    A S   L++ MGLFLQKTNIIRDYLED+VD RAFWPQ +WK+++ +      LG F   ++ E   R+L CL+ELVT+ALE  PDCL Y+S+L   +IFRFCAIPQVMAIATL   Y N +VFTGVVKIRKG +CKLI+  N++ +++  F  FA  + ++A     +G  D    +T+++CE +  +  +G
Sbjct:   11 SKKQGAYGKIKTHKEPLSKQLSHIDEVFSAVTFLYIKPLKSNLDTPFIRETFDPDDLAFCDEILVKVSRSFAAVIRQLPSTMLVDILIFYLVLRALDTIEDDTTSFPSQE-VKIKHLLNFHKTALADPTWTMDGVGEADEKLLLQKFDKCHRVFAKLSDKSRRVIIDITQRMATGMAEFVGKDLGQGTTDVDQYNRYCHFVAGLVGEGLSRLFVASGLEKASFA-SELFLSDQMGLFLQKTNIIRDYLEDYVDNRAFWPQTIWKKYSKTG----ELGYFTQQSDPEAHMRSLECLNELVTDALELAPDCLLYLSKLRCTEIFRFCAIPQVMAIATLNTCYSNSNVFTGVVKIRKGTSCKLILRTNNLDEVHDTFYQFAEGVMKKADVNRAKGVVDPSYERTIKICETVMDITSDG 419          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|219120402|ref|XP_002180940.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407656|gb|EEC47592.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 374.785 bits (961), Expect = 6.838e-120
Identity = 186/317 (58.68%), Postives = 235/317 (74.13%), Query Frame = 0
Query:  402 FCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEA----EHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCF 714
            FC D+L  VSRSFAAVIRQLP  L ++ +VFYLVLRALDT+EDD  AF   P  K+ +L  F+  AL DP++ +  VG+GDE RLL+ F +  RV+  L    R V+ D+T RM  GMA+FV KDLGQGT + ++Y+ YCH+VAGLVGEGL+R+FA SGLEA   A     L++ MGLFLQKTNIIRDYLED+VD RAFWPQ VWK++A +      LG FA++    + R+RAL CL+ELVT+ALE VPDCL Y++RL   +IFRFCAIPQVMAIATL+K YHN +VFTGVVKIRKGL+CKL++  N++  ++  F
Sbjct:    3 FCDDILVHVSRSFAAVIRQLPDRLLVDILVFYLVLRALDTIEDDTTAFAS-PEEKIDYLLNFHRTALADPDWNLQHVGQGDERRLLQQFPQCHRVYAKLAAPSRRVVADVTARMATGMAEFVRKDLGQGTTNTEQYNRYCHFVAGLVGEGLSRLFAASGLEAGSFA-GELHLSDQMGLFLQKTNIIRDYLEDYVDQRAFWPQSVWKKYAAT----DDLGYFAQSIGTDDGRDRALGCLNELVTDALELVPDCLTYLARLQCQEIFRFCAIPQVMAIATLDKCYHNVNVFTGVVKIRKGLSCKLLLRTNTLSQVHETF 313          
BLAST of EWM26314.1 vs. NCBI_GenBank
Match: gi|1173934149|gb|OQR85621.1| (hypothetical protein ACHHYP_11637 [Achlya hypogyna])

HSP 1 Score: 370.163 bits (949), Expect = 3.399e-115
Identity = 193/382 (50.52%), Postives = 253/382 (66.23%), Query Frame = 0
Query:  347 DEGKKQGAYGKIKSHSESLVSQLLRVDEVGAALRLKFARPFPETDVGHAG-DADVRFCADMLGRVSRSFAAVIRQLPKGLCLETVVFYLVLRALDTVEDDMEAFQKDPGAKLRHLRGFYHVALEDPEFKMHGVGKGDEARLLENFDRVVRVFQGLTPGMRTVIKDITRRMGAGMADFVDKDLGQGTISLQEYDLYCHYVAGLVGEGLTRMFAESGLEAPDLATSRQELANSMGLFLQKTNIIRDYLEDFVDGRAFWPQEVWKRHAPSAVPAQSLGAFAEAEHRERALACLDELVTNALEHVPDCLAYMSRLHTPQIFRFCAIPQVMAIATLEKVYHNPDVFTGVVKIRKGLACKLIMEANSMGDLYTCFSSFAGKIARRAAA 727
            DE KKQGAYG I  H ES +SQL    EV +A+++   +    + +     DAD  +C  M+ +VSRSFA VI  LP+ L L   VFYL LRALDTVEDDM+  + D   K+  L+ FY + L + +  +HG+G+GDEA LLE    V R    L    + +I DIT++MGAGMA+FV+ D+GQGT+   +YD YC+YVAGLVGEGL+R+F+ SGLE P +   + EL+ SMG FLQK NIIRDYLEDFV+GR FWPQE+WK+H        +LG   +   RE AL CL+E+V +AL H+PDC+AY+  +  P +F FCA+PQVMA+ATL K+Y+NP VFTGVVKIRKG AC L+  + SM  +   FS +   I  +  A
Sbjct:   59 DETKKQGAYGSIVIHKESKISQLSHPWEVLSAVKMLVYKKVSGSKLLPKNLDADSVWCFKMVKKVSRSFAMVIISLPEELRLSICVFYLALRALDTVEDDMK--RIDSKTKIDMLQKFY-LRLSELDLSIHGIGEGDEATLLEEAGHVNRALASLPKSHQEIIIDITKKMGAGMAEFVEVDMGQGTVKTADYDKYCYYVAGLVGEGLSRLFSASGLEHPSVG-EKTELSISMGRFLQKVNIIRDYLEDFVEGRTFWPQEIWKKHM------GNLGDMRDETKREAALDCLNEMVFDALRHIPDCMAYLGAIRNPGVFFFCAMPQVMAVATLAKLYNNPKVFTGVVKIRKGTACFLMEHSTSMPKVRGMFSEYVHDIQAKGVA 430          
The following BLAST results are available for this feature:
BLAST of EWM26314.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108320|gb|EWM26314.1|0.000e+0100.00farnesyl-diphosphate farnesyltransferase [Nannochl... [more]
gi|298704820|emb|CBJ48968.1|0.000e+056.17Isopentenyl-diphosphate delta-isomerase type 1 fus... [more]
gi|1210513081|dbj|GAX27897.1|0.000e+050.91farnesyl-diphosphate farnesyltransferase [Fistulif... [more]
gi|1210516482|dbj|GAX24649.1|0.000e+050.98farnesyl-diphosphate farnesyltransferase [Fistulif... [more]
gi|397627074|gb|EJK68341.1|0.000e+051.95hypothetical protein THAOC_10485 [Thalassiosira oc... [more]
gi|922856370|gb|KOO24732.1|0.000e+046.03isopentenyl-diphosphate delta-isomerase [Chrysochr... [more]
gi|223997364|ref|XP_002288355.1|3.954e-14750.43predicted protein, partial [Thalassiosira pseudona... [more]
gi|1072230240|gb|OEU14974.1|1.394e-13150.36Phytoene synthase [Fragilariopsis cylindrus CCMP11... [more]
gi|219120402|ref|XP_002180940.1|6.838e-12058.68predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1173934149|gb|OQR85621.1|3.399e-11550.52hypothetical protein ACHHYP_11637 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4383rna4383Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications