rna4340, rna4340 (mRNA) Nannochloropsis gaditana

Overview
Namerna4340
Unique Namerna4340
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length786
Alignment locationCM002463.1:328482..329548 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100268g5.9469.mrna
Orig protein idgnl|cribi|Naga_100268g5.9469
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:328482..329548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100268g5gene4183Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4340rna4340-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26344.1cds4330Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4340 ID=rna4340|Name=rna4340|organism=Nannochloropsis gaditana|type=mRNA|length=786bp
ATGTACCTGGCGGTGTACTGGCGGTTGAAGGGCTCCTTCTACGAGGGCCA
AGCCGGCAAGTGGGAAGCACGCTATCGGGAGCAGGTTGACAAGGGCCGCA
CGATGGAGGCGGCTTTGAAGACCGCCTTGGCGGAGGCAATGCAGGCGCGG
GATGGCCTGGCCCTCTGCCAAGAGGAACAGGCCTCCTGCTGTCTGACGCG
CGGGCCCACCCCCATGCCGGCAATGCCAGCGAACCCTACGGGCGCCAAGA
ACGAGTCCGGGACCCTTGAGTCGGGAACATCGTCGCCGGCAAACGAGCGC
CGAGGGGGGAGGTCGGGCAGGAAAGGGGCTCACAGCCATCCCATCTCCAA
CCCGGATCCCTCGTTCACGTCTGTGGGGTCCCCTCCTCGCCCCGAGCCCT
CGGTGGTTCCTCCAACGCCCCGCCGCCCCTCTTTCCTCCCCCCCGGTGGC
TCCTCCCCTACCCCCCACCTGTCCCGCTGCCTCCTCCACCTCGACGTGAA
CCAGAGCCCGTGCACGGCGGAGGCCCTCCAGCATTTGACCGGCTGCGTAG
GCCACGTGCTCACTTCTTCGGAGCTTGTCCTGAAGGAGGCCTTGAAGCAG
GGCATGGGTATGATGGGGAAGGCTCAGAGCCTGGTCGACTCGGTGGAGAA
TTTCGTGGACGAGGCCACAGCCGAGGCGCTCGTGCGCGTTGACGGATGGA
TGGAGGGACTGGCGAGAGGCCTGGTGGCGGGCGAGGGCGACGGGATCTGC
GGTCAAGGGGGATCCCCGCAATCAAGGCAGGGGTGA
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protein sequence of rna4340

>rna4340-protein ID=rna4340-protein|Name=rna4340|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MALIFAAFLWLVSLRRGQRIGSPIALAKLRGGYLKSASEKTLGTGLRDAR
LVGQSDEWRVEFFFVWFPICHDMWTRYCRGRAQRRRRKRKRGSEEMGFYK
SSSSSTEGSVQTTPPQPGNSLMWGDSALYERVEHVQEQEEPQQDHTQIPS
QSFVGLGRSLSLSASSVLNSVTSNASNLLTGGSNGFPCPTPKAAHAPKEG
SSVGEEKDEDEDDFEKVRREDAFPPPPLSARGWVQSWTPPWAIY
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mRNA from alignment at CM002463.1:328482..329548-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4340 ID=rna4340|Name=rna4340|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp|location=Sequence derived from alignment at CM002463.1:328482..329548- (Nannochloropsis gaditana)
ATGGCGCTCATCTTTGCGGCATTCCTTTGGCTCGTCTCACTGCGACGGGG
GCAACGGATCGGATCGCCCATTGCCCTTGCAAAGCTTCGCGGAGGGTACC
TCAAGTCAGCGTCGGAAAAAACCTTGGGCACCGGTCTTCGGGACGCGCGC
CTTGTCGGCCAAAGTGACGAATGGCGTGTTGAATTTTTCTTTGTATGGTT
TCCTATATGTCATGACATGTGGACGCGGTACTGTCGCGGTCGTGGTGGGT
CGGAGGGACAGGACAAGATACTTGACTAACGAGGTTACGAATGTAGTCAA
GGGCGGCAATTGTGCTAGTTGCCGTGCCACGTGCGCCGCCTCACATGGTC
TAGAAGACTCGTGAAAGCACAATGTCATTGATTTCTTGTACATAGGGTAC
TCCTGTCCCCTCCTTGTTCTCTGCTCTGCCAATGATGAAGGGCCTGGATA
GTTGGATTACGATATCCTTGGAGTATCGCTCGAGCAAATGATCTCCGAGA
GGTGAATGACTGGCTTCCCCTTCGATCTTGCATGCAGCCACGCACCCACA
CTCGACCCCTCTCCATCAATCACTAGCACAGAGGAGGAGAAGGAAGAGGA
AAAGGGGTAGTGAGGAAATGGGCTTCTATAAATCGTCTTCTTCGTCCACT
GAGGGCAGTGTACAGACCACACCTCCCCAGCCCGGCAACTCCCTGATGTG
GGGGGACTCGGCTCTTTATGAGAGGGTCGAACATGTCCAAGAGCAGGAAG
AGCCGCAGCAGGATCATACACAGATTCCGTCGCAAAGCTTCGTTGGGTTG
GGCCGGAGCTTATCCTTGTCTGCATCCTCTGTCCTCAACAGCGTCACCTC
CAACGCCAGCAACCTACTTACCGGAGGGAGCAACGGTTTTCCCTGCCCGA
CTCCCAAAGCCGCGCACGCACCGAAGGAAGGATCCAGTGTGGGCGAGGAA
AAAGACGAGGATGAGGATGATTTCGAAAAGGTGCGCCGTGAAGACGCATT
CCCCCCCCCCCCTCTTTCGGCACGTGGATGGGTCCAAAGCTGGACTCCGC
CCTGGGCTATTTATTGA
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Coding sequence (CDS) from alignment at CM002463.1:328482..329548-

>rna4340 ID=rna4340|Name=rna4340|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at CM002463.1:328482..329548- (Nannochloropsis gaditana)
CACAGAGGAGGAGAAGGAAGAGGAAAAGGGGTAGTGAGGAAATGGGCTTC
TATAAATCGTCTTCTTCGTCCACTGAGGGCAGTGTACAGACCACACCTCC
CCAGCCCGGCAACTCCCTGATGTGGGGGGACTCGGCTCTTTATGAGAGGG
TCGAACATGTCCAAGAGCAGGAAGAGCCGCAGCAGGATCATACACAGATT
CCGTCGCAAAGCTTCGTTGGGTTGGGCCGGAGCTTATCCTTGTCTGCATC
CTCTGTCCTCAACAGCGTCACCTCCAACGCCAGCAACCTACTTACCGGAG
GGAGCAACGGTTTTCCCTGCCCGACTCCCAAAGCCGCGCACGCACCGAAG
GAAGGATCCAGTGTGGGCGAGGAAAAAGACGAGGATGAGGATGATTTCGA
AAAGGTGCGCCGTGAAGACGCATTCCCCCCCCCCCCTCTTTCGGCACGTG
GATGGGTCCAAAGCTGGACTCCGCCCTGGGCTATTTATTGAATGGCGCTC
ATCTTTGCGGCATTCCTTTGGCTCGTCTCACTGCGACGGGGGCAACGGAT
CGGATCGCCCATTGCCCTTGCAAAGCTTCGCGGAGGGTACCTCAAGTCAG
CGTCGGAAAAAACCTTGGGCACCGGTCTTCGGGACGCGCGCCTTGTCGGC
CAAAGTGACGAATGGCGTGTTGAATTTTTCTTTGTATGGTTTCCTATATG
TCATGACATGTGGACGCGGTACTGTCGCGGTCGTGCACAGAGGAGGAGAA
GGAAGAGGAAAAGGGGTAGTGAGGAAATGGGCTTCTATAAATCGTCTTCT
TCGTCCACTGAGGGCAGTGTACAGACCACACCTCCCCAGCCCGGCAACTC
CCTGATGTGGGGGGACTCGGCTCTTTATGAGAGGGTCGAACATGTCCAAG
AGCAGGAAGAGCCGCAGCAGGATCATACACAGATTCCGTCGCAAAGCTTC
GTTGGGTTGGGCCGGAGCTTATCCTTGTCTGCATCCTCTGTCCTCAACAG
CGTCACCTCCAACGCCAGCAACCTACTTACCGGAGGGAGCAACGGTTTTC
CCTGCCCGACTCCCAAAGCCGCGCACGCACCGAAGGAAGGATCCAGTGTG
GGCGAGGAAAAAGACGAGGATGAGGATGATTTCGAAAAGGTGCGCCGTGA
AGACGCATTCCCCCCCCCCCCTCTTTCGGCACGTGGATGGGTCCAAAGCT
GGACTCCGCCCTGGGCTATTTATTGAATGGCGCTCATCTTTGCGGCATTC
CTTTGGCTCGTCTCACTGCGACGGGGGCAACGGATCGGATCGCCCATTGC
CCTTGCAAAGCTTCGCGGAGGGTACCTCAAGTCAGCGTCGGAAAAAACCT
TGGGCACCGGTCTTCGGGACGCGCGCCTTGTCGGCCAAAGTGACGAATGG
CGTGTTGAATTTTTCTTTGTATGGTTTCCTATATGTCATGACATGTGGAC
GCGGTACTGTCGCGGTCGTG
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Synonyms
Publications