rna4276, rna4276 (mRNA) Nannochloropsis gaditana

Overview
Namerna4276
Unique Namerna4276
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1430
Alignment locationCM002463.1:152386..153568 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100410g4.2054.mrna
Orig protein idgnl|cribi|Naga_100410g4.2054
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:152386..153568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100410g4gene4119Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4276rna4276-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26405.1cds4266Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4276 ID=rna4276|Name=rna4276|organism=Nannochloropsis gaditana|type=mRNA|length=1430bp
GCCCATATCCAACAACCCCGGACCCAGGACGCTGCCTCCTTCCCGGCGGC
GTGACTAGCCATCACTCATCCTTCTCGAGCAACTTCTCACATCACCACCG
CAACCACATCCACATATGACTTGACAGCCATGCTGTCATTTTCTCGCACG
CGGACGGCATCACAGAGAAGAATAGACGGGGATATTTCTCCGCCCATTAC
GACCTTCACCACCAGCGTCCTTCTCTTCCTCCTTGCCCTTTATCCCGCAC
CCGAGACCTCCGCCTTCTTCCTGCCCTCACCAATCTGCCAAAGTCCCGCC
AGCTACATTGATAGAACAGGGTCCGCATGGTCGCTTGTCTCGCCTAGACC
ACAGTCTTCCCTCTATAGTTCGGAGAGTAATAATACTCCGCAACGTCCCA
AACAGAAGAAAGGAGGGAGGGAAGGCTACAACAGGAATCGACGACGTGAG
GAGGCACTAGATGGCATGAAGGTCGGCCACCGCTTTGAAATGGGCTACGA
CATCGAGGAGGAAACGGTGCCCCTGGCAGAGGACGAGACGCTGCCCGTGA
TCGAAACCATCGCGTCCGCGGCGGATATGCGGAAGGGCGAAGACGTCTTG
GCCCTCAGGGTCTCTCGCTTGACCACCGTCTCCTCCTTCTTCGTCCTCGT
CTCCGGGAACAGCCGACCGCAAATTCAAGCCATTGCTGGCGCCATCGAAG
AAGACATGCTGGAGAAGCACGGCCTGGAGGTCCGGAACGGTGGGGAGGGC
ACGGCGGACAGCGGGTGGATCCTGCTGGACTATGGGAGCGTGGTGGTGAA
TGTCATGACCCCTGTGGCTCGGAAATTCTACGCGTTGGAGAAGCTGTGGA
AGAATGGCGAGGAGGTGGACCTCTCCCACATCCTTCGACCCAACCTCCCG
CCAGGCTCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGACGGACCCGG
CCCTGACCCCTCCCTCATGGAGGACGCCTTTTGGTCGTAAGGAGGGAGGG
AGGGAGGGAGGGAGGTAGGGAGGTAGGTCGGTCGTCGTTTTCTTTTCTTT
GGATGAGGGGTGGGAAAGAGGGGGAGGGGGAGGAATGGAAGAGAGTGAGG
AGGGAGGCAAAGCGTCGGCGAAACAAGCATTAAAGAAAGAGGGGGAATAG
GGGGAACGAGGCAACATCAGGAAGGGAAGGAAGGAAGCGGAGGAGGCGAC
CATGGAAGTGGCGCCTGGTTGCTTGCACTGAGTCGGTGGTAGGGGGGATG
CAGGGGGAGGCCGAGGGGGAGGTGCGGGGGGAGGGAGGGCGGGGGACAGG
GCGAGGGGGAGCTCGACGGCATCGCCTGGAAAAGAAGAAAGAAAAGGGAA
GCCGTATCCTGGCTTTTCCCGCGATTTTCTTTGCATCCTTAACTCCGGGA
CTGGCCCCTTTCTTTCCTTCGCTTTCACTC
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protein sequence of rna4276

>rna4276-protein ID=rna4276-protein|Name=rna4276|organism=Nannochloropsis gaditana|type=polypeptide|length=230bp
MRHATHTSLYLGAYPYLNTGAMSLRRRPPSLVALLMCLLTTQTLAGCRVN
GDQDASSRTISRAFLRTHCPSFVSLQGGARKDFLDRPEATYRFQGGLGGD
ALICHQGEGRWRSFSRRDSNDSGQHFPKDKAPRGSNYPPRRGGRTSDGAS
NHRKGSSDENGKDSPGPNDTRGQGLRKALSTLTGLRGRHLASPTSRVAHP
KNPPGPSTPPPQRPPKRPPSPTLPTAPQPA
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mRNA from alignment at CM002463.1:152386..153568+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4276 ID=rna4276|Name=rna4276|organism=Nannochloropsis gaditana|type=mRNA|length=1183bp|location=Sequence derived from alignment at CM002463.1:152386..153568+ (Nannochloropsis gaditana)
ATGCGCCATGCGACCCACACGTCCCTGTATCTCGGCGCATACCCGTACCT
AAACACAGGAGCCATGTCTCTGAGACGGAGACCACCAAGTCTCGTTGCCC
TCCTAATGTGCCTTTTGACCACGCAAACACTCGCCGGTTGTCGTGTAAAC
GGAGATCAAGATGCATCCTCGCGCACAATTTCCCGTGCCTTTCTGCGCAC
GCATTGCCCGTCGTTTGTTTCGCTTCAGGGGGGAGCGAGAAAAGATTTTT
TAGACCGTCCTGAGGCAACCTACAGATTCCAAGGAGGACTCGGCGGAGAT
GCTTTAATTTGCcatcaaggagaaggacgatggCGTTCCTTTTCACGCAG
GGATAGCAACGACAGTGGGCAACATTTTCCTAAAGATAAGGCGCCTCGCG
GTAGCAACTATCCTCCGCgcaggggggggcggacctCGGACGGTGCAAGT
AATCACCGGAAAGGCAGCTCTGACGAGAATGGGAAGGACTCTCCCGGCCC
CAACGACACAcggggccaaggcctccggaAAGCACTTTCGACCTTGACGG
GATTGCGCGGTCGTCACCTCGCTTCTCCCACGTCCCGTGTGGCCCATCCA
AAAAACCCTCCAGgtccctccactccccccccccaaaggcCGCCAAAAAG
ACCCCCGTCTCCCACTCTCCCCACGGCCCCACAACCCGCCTGAACAAGAT
ACTGGCCCACGCAGGCGTCGCTTCCCGACGGGGGGCAGAAGCCTTGATag
cggcggggaaggtggaagtgAACGGGGTCGTGGTCAGGGACCTTGCCTGC
CAGGTCGATCCGGTCATGGATACggtcgtggtggagggccaaAAACTGTC
GTTGGTCGCCCGGAAACCCTACGAGGTGGTCTGGATGAAGGCGCACAAGC
CCAAGGGCACCCTCTCCTCGGTCCACGACGCAAATGGCCGGAAATGTTTG
GGGGATTTGGGGGAAGAAGTCGGGGCGAAACGGCTGTTGCCGGTGGGGAA
ATTGAACCGGGAGACGGCAGGCTTGATCCTCCTCACGAACGATCACGAAG
GGATCCATTTGCTCTCGCACCcatcctccgggtatgtGAAAGTCTtcaag
gcggtggtggagaaagggatgccGTCTGCGCATGCCTTGCACCTGTTGGC
CAAGGGCCTGGtcctggcggagggcggggagga
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Coding sequence (CDS) from alignment at CM002463.1:152386..153568+

>rna4276 ID=rna4276|Name=rna4276|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at CM002463.1:152386..153568+ (Nannochloropsis gaditana)
ATGCGCCATGCGACCCACACGTCCCTGTATCTCGGCGCATACCCGTACCT
AAACACAGGAGCCATGTCTCTGAGACGGAGACCACCAAGTCTCGTTGCCC
TCCTAATGTGCCTTTTGACCACGCAAACACTCGCCGGTTGTCGTGTAAAC
GGAGATCAAGATGCATCCTCGCGCACAATTTCCCGTGCCTTTCTGCGCAC
GCATTGCCCGTCGTTTGTTTCGCTTCAGGGGGGAGCGAGAAAAGATTTTT
TAGACCGTCCTGAGGCAACCTACAGATTCCAAGGAGGACTCGGCGGAGAT
GCTTTAATTTGCcatcaaggagaaggacgatggCGTTCCTTTTCACGCAG
GGATAGCAACGACAGTGGGCAACATTTTCCTAAAGATAAGGCGCCTCGCG
GTAGCAACTATCCTCCGCgcaggggggggcggacctCGGACGGTGCAAGT
AATCACCGGAAAGGCAGCTCTGACGAGAATGGGAAGGACTCTCCCGGCCC
CAACGACACAcggggccaaggcctccggaAAGCACTTTCGACCTTGACGG
GATTGCGCGGTCGTCACCTCGCTTCTCCCACGTCCCGTGTGGCCCATCCA
AAAAACCCTCCAGgtccctccactccccccccccaaaggcCGCCAAAAAG
ACCCCCGTCTCCCACTCTCCCCACGGCCCCACAACCCGCCTGA
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Synonyms
Publications