rna4188, rna4188 (mRNA) Nannochloropsis gaditana

Overview
Namerna4188
Unique Namerna4188
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationCM002462.1:1062337..1062923 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102666g1.8369.mrna
Orig protein idgnl|cribi|Naga_102666g1.8369
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1062337..1062923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102666g1gene4032Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4188rna4188-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26495.1cds4178Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4188 ID=rna4188|Name=rna4188|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
ATGGCCTTCAAGGCTCCATCCCCTTACTACGGCAGTTCAAAGGATCATTA
CGTTTTGCACCAAACACATACCCATGAGGCAGGAACAGGCACCCTGACGA
GCAGTATTCTAATCCTGATTTCCTCCGTGTTTGGCTCCTCCATCCTCGTG
GTTCCGTTCGCATTCAGCCAATGCGGATGGGCCTTGGGCACACTGTGCAT
GATATTTTGCGGTCTTTTCACCGAGCTGGGCGCGCACTTCCTTCTGGAAA
GCGCAAGACTCGTGACTTCAATGTACCCCTCCGTCAACAGTGATGCTCTT
TCTTTCGCGGACATTGCCTCCCACGCCACTCCAAGACTGGCTTTCCTTCC
CACCGTGCTGGTCATCGTGACTTGCCTAGGAAGCGCTGTGTCTGCACTGA
AGACAGCGACGGCAAAGTCGACAGCTACCTTCTCAATCGCCCAACGTGGG
TGA
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protein sequence of rna4188

>rna4188-protein ID=rna4188-protein|Name=rna4188|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MCPDCPTVPGAGLGIGTALGPPILLRAEGSGPSHGGGDGGGTGGTEGRRF
EHALGPVGDGARQHQQHMGTAV
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mRNA from alignment at CM002462.1:1062337..1062923-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4188 ID=rna4188|Name=rna4188|organism=Nannochloropsis gaditana|type=mRNA|length=587bp|location=Sequence derived from alignment at CM002462.1:1062337..1062923- (Nannochloropsis gaditana)
ATGTGCCCGTCCGCCGGCGCACTGCTCCAGGAACTCGCCAACGCCCTATA
CCAGCACGATGCGGCCTGCCGAGTGATTGCCCGACTGTCCCGGGAGCGGG
ACTCGGCATTGGCACAGCTCTCGGCCCTCCAATCCTCCTTCGCGCAGAGG
GCAGTGGCCCAAGCCACGGAGGAGGCGATGGAGGTGGTGCGTGGGGAGGG
AGGAAGGAAGGGGCTGGGATCGAACGCGGTCGCACGTCGTCTTGATTGTC
CTTTCTGCTGGCCGTCTCTTGGGCTTTGGCTTCTCCCCGGCCCTTCCCAC
GTGCCTCCCTCCGCCCCCTACCCCCCCCCCTACTCCGGCCGCGTCTTCTA
TCCCTTCCTCCCCCGCGTCCTTTCTCCCTCCCTCTGCGCTCTCCTTTCTT
TTCCCTCTCGACCGTCACAGGCCTCGTCCCCACCTCAAACCCATCGCTTT
CTCTCCCCCCCTTCCTCCCTCCCTCCCTCCCTCCCTCAGGAACCGGCGGC
ACAGAAGGCAGGAGATTTGAACACGCCCTTGGGCCTGTCGGAGACGGTGC
TCGGCAACATCAGCAACACATGGGAACGGCTGTCTAA
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Coding sequence (CDS) from alignment at CM002462.1:1062337..1062923-

>rna4188 ID=rna4188|Name=rna4188|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002462.1:1062337..1062923- (Nannochloropsis gaditana)
GAACCGGCGGCACAGAAGGCAGGAGATTTGAACACGCCCTTGGGCCTGTC
GGAGACGGTGCTCGGCAACATCAGCAACACATGGGAACGGCTGTCTAATG
ATTGCCCGACTGTCCCGGGAGCGGGACTCGGCATTGGCACAGCTCTCGGC
CCTCCAATCCTCCTTCGCGCAGAGGGCAGTGGCCCAAGCCACGGAGGAGG
CGATGGAGGTGATGTGCCCGAACCGGCGGCACAGAAGGCAGGAGATTTGA
ACACGCCCTTGGGCCTGTCGGAGACGGTGCTCGGCAACATCAGCAACACA
TGGGAACGGCTGTCTAATGATTGCCCGACTGTCCCGGGAGCGGGACTCGG
CATTGGCACAGCTCTCGGCCCTCCAATCCTCCTTCGCGCAGAGGGCAGTG
GCCCAAGCCACGGAGGAGGCGATGGAGGTGATGTGCCCGAACCGGCGGCA
CAGAAGGCAGGAGATTTGAACACGCCCTTGGGCCTGTCGGAGACGGTGCT
CGGCAACATCAGCAACACATGGGAACGGCTGTCTAATGATTGCCCGACTG
TCCCGGGAGCGGGACTCGGCATTGGCACAGCTCTCGGCCCTCCAATCCTC
CTTCGCGCAGAGGGCAGTGGCCCAAGCCACGGAGGAGGCGATGGAGGTGA
TGTGCCC
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Synonyms
Publications