EWM26500.1, cds4173 (CDS) Nannochloropsis gaditana

Overview
NameEWM26500.1
Unique Namecds4173
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:1052724..1053276 -
Alignment locationCM002462.1:1052498..1052548 -
Alignment locationCM002462.1:1052286..1052402 -

Link to JBrowse

Properties
Property NameValue
Start range1052286
Start range.
Protein idEWM26500.1
Productsodium-dependent phosphate transport protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101986g1.4242.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:1052724..1053276 -
CM002462.1supercontigCM002462.1:1052498..1052548 -
CM002462.1supercontigCM002462.1:1052286..1052402 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Homology
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|585108560|gb|EWM26500.1| (sodium-dependent phosphate transport protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 475.322 bits (1222), Expect = 2.314e-169
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0
Query:    1 MHATLPPPSLPPAFPPSLSPPSPLRPSGGCGGGAWSPPSSVGEPGQRPLERLREQPRPLGRHVRAHGRKEGREGGREGGREGMREGRRIRIRRSRLGGEGLDRRVSISAHYLAIVPLPLPFVLPFHPSHPDASLPILQAHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVRGSPNLSQGQPPSPKRDG 240
            MHATLPPPSLPPAFPPSLSPPSPLRPSGGCGGGAWSPPSSVGEPGQRPLERLREQPRPLGRHVRAHGRKEGREGGREGGREGMREGRRIRIRRSRLGGEGLDRRVSISAHYLAIVPLPLPFVLPFHPSHPDASLPILQAHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVRGSPNLSQGQPPSPKRDG
Sbjct:    1 MHATLPPPSLPPAFPPSLSPPSPLRPSGGCGGGAWSPPSSVGEPGQRPLERLREQPRPLGRHVRAHGRKEGREGGREGGREGMREGRRIRIRRSRLGGEGLDRRVSISAHYLAIVPLPLPFVLPFHPSHPDASLPILQAHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVRGSPNLSQGQPPSPKRDG 240          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|299116817|emb|CBN74929.1| (Similar to transporters, possibly for inorganic phosphate [Ectocarpus siliculosus])

HSP 1 Score: 99.3673 bits (246), Expect = 2.956e-20
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  138 QAHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVRG 224
             AHN+GLYVLLAWLPTYF Q + L L+QSS  SV PW+  A+  N+AG GAD L+   ++    VRKLFQ  AL+ PAACM  L +G
Sbjct:  459 MAHNWGLYVLLAWLPTYFVQEFNLTLEQSSGASVLPWVVGAVAGNMAGSGADLLVKKGMLEVKWVRKLFQTVALVGPAACMLLLAQG 545          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|760446985|ref|XP_011400561.1| (Sodium-dependent phosphate transport protein 1, chloroplastic [Auxenochlorella protothecoides] >gi|675355138|gb|KFM27578.1| Sodium-dependent phosphate transport protein 1, chloroplastic [Auxenochlorella protothecoides])

HSP 1 Score: 85.1149 bits (209), Expect = 2.326e-15
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 0
Query:  140 HNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVR 223
            HN+G ++LL W+P+Y++Q  GLDL+ S   SV PWI  AI +N+ GW ADTLI +  V+ TTVRK+ Q    L PA  +T L R
Sbjct:  310 HNWGTFILLTWMPSYYNQVLGLDLRASGFFSVLPWITMAISANIGGWLADTLI-ARGVSVTTVRKVMQTIGFLGPAFFLTQLGR 392          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|922386068|ref|XP_003594358.2| (anion transporter 4 [Medicago truncatula] >gi|657397199|gb|AES64609.2| anion transporter 4 [Medicago truncatula])

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0
Query:  139 AHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTAL 221
             HN+G ++LL W+PTY++Q    +L +S +L V PW+  A+ +N+ GW ADTL+ S+ V+ TTVRK+ Q    L PA  +T L
Sbjct:   91 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLV-SKGVSITTVRKIMQSIGFLGPAFFLTQL 172          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|926787376|ref|XP_013902162.1| (Sodium-dependent phosphate transport protein 1, chloroplastic [Monoraphidium neglectum] >gi|761972791|gb|KIZ03143.1| Sodium-dependent phosphate transport protein 1, chloroplastic [Monoraphidium neglectum])

HSP 1 Score: 82.8037 bits (203), Expect = 1.661e-14
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 0
Query:  116 PLPLPFVLPFHPSHPD-ASLPILQAHNY---GLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVRGSPNL 228
            P+P  F LP+     + A + ++ AH+    G Y++L+WLP+++S  + LD+  S+ LS+ PW+A+A+VS  +GW ADTL+N+  +T T  RKL Q + +L+PAAC+  L      L
Sbjct:  391 PMPSLFKLPWRRFLTNRAFIGLMCAHSMFGSGHYIILSWLPSFYSDVFHLDVSSSATLSIFPWVASAVVSASSGWIADTLVNNGTLTTTQTRKLMQSAGMLLPAACLLVLADAQDGL 507          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|124360884|gb|ABN08856.1| (Putative transporter C20orf59 homolog, related [Medicago truncatula])

HSP 1 Score: 79.337 bits (194), Expect = 1.723e-14
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0
Query:  139 AHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTAL 221
             HN+G ++LL W+PTY++Q    +L +S +L V PW+  A+ +N+ GW ADTL+ S+ V+ TTVRK+ Q    L PA  +T L
Sbjct:   39 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAVFANIGGWIADTLV-SKGVSITTVRKIMQSIGFLGPAFFLTQL 120          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|159472424|ref|XP_001694351.1| (major facilitator superfamily protein [Chlamydomonas reinhardtii] >gi|158277014|gb|EDP02784.1| major facilitator superfamily protein [Chlamydomonas reinhardtii])

HSP 1 Score: 81.6481 bits (200), Expect = 2.458e-14
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 0
Query:  140 HNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKL 205
            HN+GL++LL W+P Y++Q  GL+L QS +LSV PW+A A+++N+AGW AD L+    V+ TTVRK+
Sbjct:  214 HNWGLFILLTWMPAYYNQVLGLNLTQSGLLSVLPWVAQAVMANVAGWAADNLVERG-VSITTVRKV 278          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|552838555|ref|XP_005849602.1| (hypothetical protein CHLNCDRAFT_143059 [Chlorella variabilis] >gi|307109262|gb|EFN57500.1| hypothetical protein CHLNCDRAFT_143059 [Chlorella variabilis])

HSP 1 Score: 82.0333 bits (201), Expect = 2.537e-14
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 0
Query:  140 HNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTAL 221
            HN+G ++LL W+PTY++Q  GLDLK S   SV PW+  AI +N+ GW ADTL+     + T+VRK+ Q    L PA  +T L
Sbjct:  362 HNWGTFILLTWMPTYYNQVLGLDLKSSGFFSVLPWVTMAISANVGGWIADTLVERG-WSVTSVRKIMQTIGFLGPAFFLTQL 442          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|926784452|ref|XP_013900700.1| (putative anion transporter 2 [Monoraphidium neglectum] >gi|761971010|gb|KIZ01681.1| putative anion transporter 2 [Monoraphidium neglectum])

HSP 1 Score: 81.2629 bits (199), Expect = 4.577e-14
Identity = 36/83 (43.37%), Postives = 54/83 (65.06%), Query Frame = 0
Query:  139 AHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTAL 221
             HN+G+++LL W+PTY++Q  GLD+  S + SV PW+  ++ +N  GW ADT++ S  V  TTVRK+ Q    L PA  ++ L
Sbjct:  384 CHNWGVFILLTWMPTYYNQVLGLDIMSSGLFSVLPWVTMSVTANFGGWLADTMV-SRGVAVTTVRKVMQSVGFLGPAFFLSQL 465          
BLAST of EWM26500.1 vs. NCBI_GenBank
Match: gi|658007318|ref|XP_008338835.1| (PREDICTED: ascorbate transporter, chloroplastic-like isoform X1 [Malus domestica])

HSP 1 Score: 81.2629 bits (199), Expect = 5.496e-14
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 0
Query:  139 AHNYGLYVLLAWLPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKTTVRKLFQCSALLIPAACMTALVR 223
             HN+G ++LL W+PTY++Q    +L +S +L V PW+  AI +N+ GW ADTL+ S+  + TTVRK+ Q    L PA  +T L R
Sbjct:  428 CHNWGTFILLTWMPTYYNQVLKFNLTESGLLCVLPWLTMAIFANIGGWIADTLV-SKGFSVTTVRKIMQSIGFLGPAFFLTLLSR 511          
The following BLAST results are available for this feature:
BLAST of EWM26500.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108560|gb|EWM26500.1|2.314e-169100.00sodium-dependent phosphate transport protein, part... [more]
gi|299116817|emb|CBN74929.1|2.956e-2056.32Similar to transporters, possibly for inorganic ph... [more]
gi|760446985|ref|XP_011400561.1|2.326e-1550.00Sodium-dependent phosphate transport protein 1, ch... [more]
gi|922386068|ref|XP_003594358.2|1.081e-1444.58anion transporter 4 [Medicago truncatula] >gi|6573... [more]
gi|926787376|ref|XP_013902162.1|1.661e-1439.32Sodium-dependent phosphate transport protein 1, ch... [more]
gi|124360884|gb|ABN08856.1|1.723e-1444.58Putative transporter C20orf59 homolog, related [Me... [more]
gi|159472424|ref|XP_001694351.1|2.458e-1453.03major facilitator superfamily protein [Chlamydomon... [more]
gi|552838555|ref|XP_005849602.1|2.537e-1447.56hypothetical protein CHLNCDRAFT_143059 [Chlorella ... [more]
gi|926784452|ref|XP_013900700.1|4.577e-1443.37putative anion transporter 2 [Monoraphidium neglec... [more]
gi|658007318|ref|XP_008338835.1|5.496e-1444.71PREDICTED: ascorbate transporter, chloroplastic-li... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4183rna4183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications