rna4183, rna4183 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4183
Unique Name	rna4183
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1021
Alignment location	CM002462.1:1052286..1053558 -

Link to JBrowse

Properties


Property Name	Value
Product	sodium-dependent phosphate transport protein
Orig transcript id	gnl\|cribi\|Naga_101986g1.4242.mrna
Orig protein id	gnl\|cribi\|Naga_101986g1.4242
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:1052286..1053558 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101986g1	gene4026	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4183	rna4183-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26500.1	cds4173	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:1052286..1053558-
coding sequence from alignment at CM002462.1:1052286..1053558-

mRNA sequence

>rna4183 ID=rna4183|Name=rna4183|organism=Nannochloropsis gaditana|type=mRNA|length=1021bp
AACGGGACGGTCCCGAACACCCAGCCCCCTCCCTCCCTCCCCCCCTCCCC
TCCCCCCCTCCCCTTTCCGCAGGCCTTGGGCACCCACACACCCGCAGAGG
CACAGGCCATCTTCACGCTCTCCGTGGCTGCAGGCTCCATGTCCAGCGCT
GGATTCGCGACGGCCACGCAGGATTTGGCCGACAAGTACATTGGGATGTA
CGTGGGGGAGGGAGGGAGGGAGGGAAGCCTACTTTTATTAACCTGGAATT
TGGCGTGTACGAGCGAGAGGGATAGGGTACGACTTGTTGAACAAGATTAT
GCGAATTGGAAGAATGGTTTATCGATGCAAAGCTCCTCTTTTTTAATCCC
CAATGCTTCCTTGTCCACCTTGTCTCGCCCCGTTAGCACCTACGGCGCGA
CGAGTGCCCTTTCGGTGATTGTCGGCTCGCTCGGGACTTTTGGTACGGGT
ATGATTTTGGATTATTCGCACGAGTGGCCCTGGGTCTTTGGGATCGCGGC
GGGCGTGTATGCGACGGGGGCGTTGGCGTTCGCGCAGTTGTACAAGGCGG
AAAAGGTGTTTGACTAGGCGAAACGAATGGAGGGAGGGAAAGGGGAGGCT
GGGCAAGATGTGTGACGAGGTGAAACGAATGGAGGGAGGGAAGGAGGGGA
AGGTGATGAGAGGGCACCTGAGAAAACACCGGCCTTTCCGACGCCTGGAC
TCGATGGTCGCTTGCATAGACTCGGTGGTTTTAATGGAAGAAAGAACGCG
GGAGGACATTGCGAAGGGAGGACAAAGTAGATAAATGGGGACGGAATCGC
TTCGTGTGGATATAGGAAAGGAAGGAGAGTGTGCCCGTGACGGGAAGGAA
CCGAGGAGACAAGTCGCCCATGAACCCCTCCCCTGCTCCCCCCCTTGCCC
CCGAAAGCAAATGCGCCAGGCCTGTCGTTGGCGCTCCTTCGTCGCCTGCC
TTTTATTTGAGGGCATTTCATGCCGTTGTTGACTTTCTAAAGTCGTTGTA
TACTTTCTCGAACCCTCGCTA

protein sequence of rna4183

>rna4183-protein ID=rna4183-protein|Name=rna4183|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
MHATLPPPSLPPAFPPSLSPPSPLRPSGGCGGGAWSPPSSVGEPGQRPLE
RLREQPRPLGRHVRAHGRKEGREGGREGGREGMREGRRIRIRRSRLGGEG
LDRRVSISAHYLAIVPLPLPFVLPFHPSHPDASLPILQAHNYGLYVLLAW
LPTYFSQTYGLDLKQSSVLSVAPWIAAAIVSNLAGWGADTLINSEVVTKT
TVRKLFQCSALLIPAACMTALVRGSPNLSQGQPPSPKRDG

mRNA from alignment at CM002462.1:1052286..1053558-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4183 ID=rna4183|Name=rna4183|organism=Nannochloropsis gaditana|type=mRNA|length=1273bp|location=Sequence derived from alignment at CM002462.1:1052286..1053558- (Nannochloropsis gaditana)
TCCTCCAGGCGTGCTCCTCGCCTACCTGGCCTCCCCAACCCTGATCCGCC
TGACGTCCTGGGAGGACCTCTTCCGCATCTACGGTGGCCTGGGTTTGCTC
TGGCTGGCGCTGTGGATCCCTTTCGCAGCTGAGAAGCCTCCCTCCTCCCC
GGCGCCGCTGGTTGGCTTCCCCCCCTCCCTTTCTCCCTCCCCCCCTCCTT
CCCCACTCCTCGATGCCTCCCTCTGTGCTCCGTTCCTGGAGGTTGTCATT
AAACACACGGCATACGCGGCATCGCTAAGATAATGCATGCGACCCTCCCC
CCTCCCTCCCTTCCTCCGGCTTTCCCTCCCTCCCTTTCTCCCCCTTCCCC
CCTCCGGCCCTCAGGAGGGTGTGGAGGAGGTGCCTGGAGCCCTCCGTCAA
GTGTGGGAGAGCCTGGTCAGCGTCCCCTGGAAAGACTTCGTGAGCAGCCC
CGCCCTCTGGGCCGTCACGTTCGCGCACATGGTAGAAAGGAAGGAAGGGA
AGGAGGGAGGGAGGGAGGGAGGGAAGGAATGAGGGAGGGAAGGAGGATAA
GGATACGGAGGTCGAGGTTGGGGGGGGAAGGGCTGGACCGACGGGTCTCG
ATTTCCGCTCACTATCTCGCCATCGTTCCTCTTCCCCTCCCCTTCGTCCT
CCCATTCCACCCCTCACATCCGGACGCTTCCCTACCCATCCTCCAGGCGC
ACAATTACGGCCTGTACGTGCTCCTGGCCTGGCTCCCTACCTATTTTTCT
CAGACCTACGGGCTGGATTTGAAGCAGAGCAGCGTTCTTTCCGTCGCTCC
TTGGATCGCGGCGGCGATCGTCTCGAACTTGGCAGGTGGGCAGGGCACGG
TGGGGAAAGACAAGGAGGGAGGGAGGGAGGGAGGAGGAGGAGGGAGGGGT
GAAGGCACTGTGGAGGGGGGGCGGAGGGAAAGGGTAGGAAGCGAGGAAGA
CAAAAGGGACGGCGGTATCACGCGCGTTATAATGGTGGGGCCGTGCCCGA
CACATGACAGGTTGGGGCGCAGATACCTTAATAAACAGCGAGGTGGTGAC
CAAGACCACAGGTATGTTCCCCGAGGATGAAGGAGGGCGGGGGGAGGGCG
GGAGGCAGAAGGACGCCAGGGAAGCCCATCCTTCCCCCTGTCTCCTCCCA
CGTCAGTCCGGAAGCTCTTCCAGTGCAGCGCTCTTCTCATCCCTGCCGCC
TGCATGACCGCGCTGGTACGTGGCTCCCCCAACCTCTCCCAGGGCCAACC
CCCGTCCCCGAAACGGGACGGTC

Coding sequence (CDS) from alignment at CM002462.1:1052286..1053558-

>rna4183 ID=rna4183|Name=rna4183|organism=Nannochloropsis gaditana|type=CDS|length=2163bp|location=Sequence derived from alignment at CM002462.1:1052286..1053558- (Nannochloropsis gaditana)
TCCGGAAGCTCTTCCAGTGCAGCGCTCTTCTCATCCCTGCCGCCTGCATG
ACCGCGCTGGTACGTGGCTCCCCCAACCTCTCCCAGGGCCAACCCCCGTC
CCCGAAACGGGACGGTCGTTGGGGCGCAGATACCTTAATAAACAGCGAGG
TGGTGACCAAGACCACAGATGCATGCGACCCTCCCCCCTCCCTCCCTTCC
TCCGGCTTTCCCTCCCTCCCTTTCTCCCCCTTCCCCCCTCCGGCCCTCAG
GAGGGTGTGGAGGAGGTGCCTGGAGCCCTCCGTCAAGTGTGGGAGAGCCT
GGTCAGCGTCCCCTGGAAAGACTTCGTGAGCAGCCCCGCCCTCTGGGCCG
TCACGTTCGCGCACATGGTAGAAAGGAAGGAAGGGAAGGAGGGAGGGAGG
GAGGGAGGGAAGGAATGAGGGAGGGAAGGAGGATAAGGATACGGAGGTCG
AGGTTGGGGGGGGAAGGGCTGGACCGACGGGTCTCGATTTCCGCTCACTA
TCTCGCCATCGTTCCTCTTCCCCTCCCCTTCGTCCTCCCATTCCACCCCT
CACATCCGGACGCTTCCCTACCCATCCTCCAGGCGCACAATTACGGCCTG
TACGTGCTCCTGGCCTGGCTCCCTACCTATTTTTCTCAGACCTACGGGCT
GGATTTGAAGCAGAGCAGCGTTCTTTCCGTCGCTCCTTGGATCGCGGCGG
CGATCGTCTCGAACTTGGCAGTCCGGAAGCTCTTCCAGTGCAGCGCTCTT
CTCATCCCTGCCGCCTGCATGACCGCGCTGGTACGTGGCTCCCCCAACCT
CTCCCAGGGCCAACCCCCGTCCCCGAAACGGGACGGTCGTTGGGGCGCAG
ATACCTTAATAAACAGCGAGGTGGTGACCAAGACCACAGATGCATGCGAC
CCTCCCCCCTCCCTCCCTTCCTCCGGCTTTCCCTCCCTCCCTTTCTCCCC
CTTCCCCCCTCCGGCCCTCAGGAGGGTGTGGAGGAGGTGCCTGGAGCCCT
CCGTCAAGTGTGGGAGAGCCTGGTCAGCGTCCCCTGGAAAGACTTCGTGA
GCAGCCCCGCCCTCTGGGCCGTCACGTTCGCGCACATGGTAGAAAGGAAG
GAAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAATGAGGGAGGGAAGG
AGGATAAGGATACGGAGGTCGAGGTTGGGGGGGGAAGGGCTGGACCGACG
GGTCTCGATTTCCGCTCACTATCTCGCCATCGTTCCTCTTCCCCTCCCCT
TCGTCCTCCCATTCCACCCCTCACATCCGGACGCTTCCCTACCCATCCTC
CAGGCGCACAATTACGGCCTGTACGTGCTCCTGGCCTGGCTCCCTACCTA
TTTTTCTCAGACCTACGGGCTGGATTTGAAGCAGAGCAGCGTTCTTTCCG
TCGCTCCTTGGATCGCGGCGGCGATCGTCTCGAACTTGGCAGTCCGGAAG
CTCTTCCAGTGCAGCGCTCTTCTCATCCCTGCCGCCTGCATGACCGCGCT
GGTACGTGGCTCCCCCAACCTCTCCCAGGGCCAACCCCCGTCCCCGAAAC
GGGACGGTCGTTGGGGCGCAGATACCTTAATAAACAGCGAGGTGGTGACC
AAGACCACAGATGCATGCGACCCTCCCCCCTCCCTCCCTTCCTCCGGCTT
TCCCTCCCTCCCTTTCTCCCCCTTCCCCCCTCCGGCCCTCAGGAGGGTGT
GGAGGAGGTGCCTGGAGCCCTCCGTCAAGTGTGGGAGAGCCTGGTCAGCG
TCCCCTGGAAAGACTTCGTGAGCAGCCCCGCCCTCTGGGCCGTCACGTTC
GCGCACATGGTAGAAAGGAAGGAAGGGAAGGAGGGAGGGAGGGAGGGAGG
GAAGGAATGAGGGAGGGAAGGAGGATAAGGATACGGAGGTCGAGGTTGGG
GGGGGAAGGGCTGGACCGACGGGTCTCGATTTCCGCTCACTATCTCGCCA
TCGTTCCTCTTCCCCTCCCCTTCGTCCTCCCATTCCACCCCTCACATCCG
GACGCTTCCCTACCCATCCTCCAGGCGCACAATTACGGCCTGTACGTGCT
CCTGGCCTGGCTCCCTACCTATTTTTCTCAGACCTACGGGCTGGATTTGA
AGCAGAGCAGCGTTCTTTCCGTCGCTCCTTGGATCGCGGCGGCGATCGTC
TCGAACTTGGCAG

Synonyms

Publications