rna4141, rna4141 (mRNA) Nannochloropsis gaditana

Overview
Namerna4141
Unique Namerna4141
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length630
Alignment locationCM002462.1:971393..972084 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102630g1.10422.mrna
Orig protein idgnl|cribi|Naga_102630g1.10422
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:971393..972084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102630g1gene3986Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26542.1cds4131Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4141rna4141-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4141 ID=rna4141|Name=rna4141|organism=Nannochloropsis gaditana|type=mRNA|length=630bp
ATGGAACATGGCGGCATGGTGCACACTGGCGATGCCATGAGCCCCCCGCC
ACCCTGCCGGCACTGCTTCTGGGGCCACGTCATGCCGGGGAGCTACCTCC
TCTTCCGCGCTTTCCTCCTCCTCCTGGAAGCCCTCTCCATCCAACAACCG
GGACGCTTCCGGCCCCGCACCCAAGCTCGCCTTCGTGCCTACAGCAGCCT
CCTTGCGGGCCCCTTGCTCGCCTTGGGGGAAGGGCTGACTCACAAAGCCT
GGCATGGAGCCAATGTACAGCATTTTAGCATTTATTCGTTGATTTTTTTG
GACGGGCTGGTATCTTGGTATTGCCTCCTGTCCCACCCAGAGAGGGGGAG
GAAAGGCAGAGGCTGGCCGGTTGCCCTGCTGGGCGTGTGGGAAGGCGGGG
TTTCAGCTTGTGTTGGGTACCAGATGGTCTCGCATTTTCACGGCGGCATC
CTCATCACCTCCATGCACGCGCTCATGTCACCCTTGCTGACCCTGGTGGG
CACCCTCCTGCTCGTGGATCGGGTCCTGATGGGGAGGGAGGGCGGGCAGA
GACGGGAAGGGGTGAAGCTGGCGGCGGCGGTGGGGATGGCGTGGGTGGGC
TGTTGGGCGGGATGGAGGGGCACGAGGTGA
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protein sequence of rna4141

>rna4141-protein ID=rna4141-protein|Name=rna4141|organism=Nannochloropsis gaditana|type=polypeptide|length=87bp
MPFAHFSDPGSRPRPTCPPLPPPPPSPSSRGTCWHPAWWTPATWASPRRK
TWPGPCGDRGCTRSCRNSARTSSVSRRTIATRNFSTP
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mRNA from alignment at CM002462.1:971393..972084-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4141 ID=rna4141|Name=rna4141|organism=Nannochloropsis gaditana|type=mRNA|length=692bp|location=Sequence derived from alignment at CM002462.1:971393..972084- (Nannochloropsis gaditana)
CTCCCCCCATCAGCGACGTCCCAGACGCTCCCTGCTCGCAATGCCCTTCG
CGCATTTTTCCGACCCTGGATCCCGCCCACGCCCCACCTGCCCCCCCCTC
CCTCCTCCACCACCTTCTCCCTCCTCTCGTGGAACGTGCTGGCACCCAGC
TTGGTGGACCCCAGCTACTTGGGCTTCGCCTCGGAGGAAGACTTGGCCTG
GTCCGTGCGGGGACCGCGGGTGCACGCGCTCCTGCAGGAACAGCGCCCGG
ACATCGTCTGTCTCCAGGAGGACGATCGCTACCCGGAATTTCTCGACGCC
TTGAACGCCGACGTCCTGAAACCGAGCCCTGCGCCCAGTCCCCTTACCAT
GGCCCCTTCCCTTCCCCCCCTCGACCCGCTGCTGTCGCCCAATGCGACCT
CCCCCGGGACTCCCTTCGGTGTGGAGGGAGAGGAGGGCGTGGGGCCTGCT
CCTCCCGAGCCCTTTGCTTCCCCTTCCCCGCCATCCATGCCCGCGTACGC
CGGGCGTTGGAAGAAACGCACGGGCCCGACAAAAGCCGACGGGTGCTCGG
TCCTGTGGCGCACGCAACGCTTTGAGCTTCTGGAGGCGGAGGAGGTGGAG
TACCGTATCCCCGGCTGCAAGTTTTTGGACAGGGACAACGTGGCCATCTT
GGTGGTGTTGCAGGAGCGGGGAAGGGAAGGAAGGGGAGGGAG
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Coding sequence (CDS) from alignment at CM002462.1:971393..972084-

>rna4141 ID=rna4141|Name=rna4141|organism=Nannochloropsis gaditana|type=CDS|length=264bp|location=Sequence derived from alignment at CM002462.1:971393..972084- (Nannochloropsis gaditana)
ATGCCCTTCGCGCATTTTTCCGACCCTGGATCCCGCCCACGCCCCACCTG
CCCCCCCCTCCCTCCTCCACCACCTTCTCCCTCCTCTCGTGGAACGTGCT
GGCACCCAGCTTGGTGGACCCCAGCTACTTGGGCTTCGCCTCGGAGGAAG
ACTTGGCCTGGTCCGTGCGGGGACCGCGGGTGCACGCGCTCCTGCAGGAA
CAGCGCCCGGACATCGTCTGTCTCCAGGAGGACGATCGCTACCCGGAATT
TCTCGACGCCTTGA
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Synonyms
Publications