rna4126, rna4126 (mRNA) Nannochloropsis gaditana

Overview
Namerna4126
Unique Namerna4126
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2294
Alignment locationCM002462.1:926061..927498 -

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Properties
Property NameValue
Productrhodanese domain protein
Orig transcript idgnl|cribi|Naga_100084g13.1565.mrna
Orig protein idgnl|cribi|Naga_100084g13.1565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:926061..927498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100084g13gene3971Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26557.1cds4116Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4126rna4126-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4126 ID=rna4126|Name=rna4126|organism=Nannochloropsis gaditana|type=mRNA|length=2294bp
AATACAGATAAGGCAGGAATCAGCATGAACTATCCTGGCGTATAGCTGAA
ATCACAGATCATGGCTCACCATGCTCCGAAGAACACAACTGGACATCTTC
GATCAGCATTCATGAGGAGAGGCATCGGAATTAACAAAATTACAGGACGT
TTCCTGTCGGCATTGGTGATAATGTATGCTTTCCTATATTTTGATATTCT
AGGAGGCTTCGCCGTATCAGATCGAGTTAACATCCAGGAGGCTTCAAAAG
CAATGCAAGCTCTTCCTATGTCGAAAGCCTCGGACTCGGTGGCGCCAGAC
TCCAGAAACTTTCTCGACCTTGAGGAAGCAAATCAAGAGCTCCCGCCTTC
GTTACCACAAACAGAGCAAAGCAATCAGCAGATAGTCTCTGCCACGACAC
GAGACGATGCTTCTTCTGTCTCTGCTGGCCCTGTAACGTCACAGGCACTT
TTGCATGAGAAAGACGCACAGACATCTCTCAATGCCTCCTCAGGCATGCC
GGTCAATACCTCCGGGTCTGAAGAGTTGCGTCGAAACTACCGTGCGTCCT
TCATCGAGGAACTCAATTCATCGGACGATCTAGTCATGAAGACTGCTGGT
GCTGTACTGGCTCACAAACAAAAGCATGGCGACTGCAAGATTGACGTCCA
CAAAGAAGCTGATCCGTGGAATAAGCTTGACGGAGTACGCCGAGACATTG
CAGTGTGCATGGTATTGAAGAACGAAGCGAGAATCCTGGACGAATACATT
GCATTCCACTGGTTGCAAGGCGTGAGCAAATTCGTCATTTACGACGATGC
CTCCCAGGACAATCCTTGGTCGGTGTTGGAGAAGTACGTGGCGTTGGGCA
TCGTCGAATACCACAACATGACGGGCCACCCCAATCCTTCGAGCTCTAAG
TTGCAGATCACGAGCTTGAACACTTGTTCTAAAAGCCTACGGCAGCGTGC
TGAGGAGGAAGGTCTGCGATGGATCGCCTTCATCGACGCTGACGAGTTCG
CTCTATCCTCAGTCCCAAACGAGTCATTATCCGAGACCCTCAACAAGAAC
TACAGGGGCGAAGCATGCTTGGCTATCCATAGGACCTGGTACGGATCGTC
CTTCCAGCATAAGAAGCCGTCGGGTCTGGTTATTGAGACGTATCTGATGG
CATCCAGCGACTACGGTGGCGGAATATGGAATGGCAAGCTGATTGCGAAT
ATAAATCCGGAGGGCAAAGCCATCAACGCGACCACACTATCGACCGTGCA
CTCCTTCAGAAAGGAGGACAATGTGTCATGCAAGTCCCAGACGACTATAA
GGGACGTCCGTGTGAACCACTACTTGCGGAGCCTGGAAGAATACAGCACG
AAGGCGTATCACAACCATAATAAGCCACAGCTGGAGGAGACACCGTTTGA
AAGATTTTTCCGAAGGGACTTCAATCTGGTCTCAAGCCCCATTGCTGCCG
ACTACGCATGCCGTGTCCACGCTCTTCTACAGCAAATCGAAGATATGAAG
ACTACTGGCAAGATACCCGCCGCAGAGCGGCCTGGACCTTGGAATGGCAC
TTATACGTAGCCAAAGAAACATGAGCGGGAGATTCGCGCTTTATATATAT
CAGCGGAAGACATGATTGCTTGTCTTTTTGTATCATACCGTCCAGTAGTA
TATTTTAAATGTCATATGGGAGTCCCTTTTATACCACTTCGACCCCAAGC
TTGGCTTTGAGTAAGGTTATAAATAGGACGTGTCTTATATATTTTCAGTA
TCGCGTCTTGTATTGATTGAAGAGTTTCACAGAATGTCATTTAATCCCAA
ATTCACTATTTAATTTCTGCATTCAAGGCTAAGCGCTGGATGAGTGTGGA
TACATCTTTAATGAAGTGTCCTTTGTCACGGTTACTCTGACATGACTGTA
ATCTTTGCTCTGTCACCTGTCAATTTAATAATCATTTACATGGTAAAAGT
ACTAAATGAACGATATCAAGCCATATCAAATGACAAGACAATGCAAGCAT
AACGACAAGTGTGTGAAGAAATATGTTTCGATGCGTGACCAACAAAAGGA
CTCCCAAAAAAAGCCAGATCTGCGTGCCTGTCCAAGCAGACCCCTTTGCT
GGACTTGATCAACCAAAGAACAAAGAGCTCCCCTGTTGAAGTCGAGGTTA
GCTTGCCAAGAGAAGGACACATAAAAATGCCTTTCTTGCAAGGACAGTTC
TACAGTGTGATTCTCTTCGCGGTAGCGCTTTACTTCCTACGCAAGCAGCC
AGAACCACGGTTGTCGTCCTCCATTTAAGACCGCTTGCACTAAA
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protein sequence of rna4126

>rna4126-protein ID=rna4126-protein|Name=rna4126|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MLGGRQALNLSQRYLASIGTHLLLLFFVRPHFPTAIISFGVCDAFVSQFS
PNVQYDVSNSWISLSRRLHQRGRDLVPFSSGVAPDLQAASRSIDVPDLPG
LVTTEWLADHVDDEDLAILDVRGEVAKAPVTNGTQESEYIALKGDYVDAH
IPNAAFVDWIDDIAYTDDAGVPVQILPLDDFRVCMESRGVGLRKRVVIYD
NGNFLFATRLWWALRIAGHQAVAILDGGWNKWLAEDWPVTADAPCPLKIN
EAWESEFIATSVDGAMIPSFLSSRVNASQVLQFCQEDSGSENVQIIDARS
REQYMGRISRSSRAGHIPRARSLPYKDLLTPPIVHPLSRHPYRLIKSKDA
LELTLREAGVSIDGQATPLTCVYCNGGVASTVVIFVLNQLYGMRTSNFDG
SWNEWGKREDFPVSSEMDK
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mRNA from alignment at CM002462.1:926061..927498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4126 ID=rna4126|Name=rna4126|organism=Nannochloropsis gaditana|type=mRNA|length=1438bp|location=Sequence derived from alignment at CM002462.1:926061..927498- (Nannochloropsis gaditana)
AACCTGGGGTTCCGGCGTAAGGCCCGCGATTTCCACGCAGATGTCATCGC
CCGTTTTTGGCTCGAACGGATCGGAACGATTCTAAATCGGTGGGTATGTT
TTTATGCTGATAGCACTGTCTTGATGACCAAAAACGTGTCACAGGGCAAC
TCCATACATGTTAGGCGGCCGTCAGGCACTGAATCTTTCTCAGAGGTACC
TCGCGTCCATCGGGACGCATCTACTTCTCCTCTTCTTCGTCCGGCCGCAT
TTTCCGACTGCCATCATCTCCTTTGGAGTATGTGATGCCTTCGTATCGCA
GTTTTCACCCAATGTACAATACGACGTCTCAAATTCATGGATATCGCTGT
CGCGGCGACTGCACCAGCGTGGCAGGGACTTGGTTCCATTCTCATCAGGG
GTCGCCCCTGACCTGCAGGCGGCTAGTCGCAGCATCGATGTCCCAGACCT
ACCGGGACTTGTGACCACTGAATGGCTGGCAGACCATGTAGACGATGAAG
ACTTAGCCATTCTCGACGTCCGCGGAGAAGTTGCTAAGGCCCCTGTCACG
AATGGCACGCAAGAATCCGAATATATTGCTTTGAAGGGCGATTATGTCGA
TGCGCATATTCCAAATGCGGCCTTCGTAGATTGGATCGATGACATCGCTT
ACACGGACGATGCCGGAGTTCCCGTTCAAATACTACCACTTGATGACTTT
CGCGTGTGCATGGAATCAAGAGGCGTGGGTTTGAGGAAGCGGGTCGTCAT
TTATGACAACGGTAATTTCCTTTTTGCCACAAGGCTGTGGTGGGCTTTGC
GCATTGCAGGGCATCAAGCGGTGGCTATCCTTGATGGTGGGTGGAACAAG
TGGCTTGCAGAAGACTGGCCTGTGACTGCCGACGCGCCGTGCCCCTTGAA
AATAAATGAAGCATGGGAGAGTGAGTTTATAGCCACATCTGTCGACGGCG
CAATGATCCCTTCCTTTCTTTCCTCCCGCGTGAACGCCAGTCAAGTCTTG
CAGTTCTGTCAGGAGGACTCTGGAAGTGAGAACGTGCAAATTATCGATGC
ACGCAGTCGGGAGCAGTACATGGGAAGGATATCCCGCTCTTCACGCGCAG
GACACATTCCCCGCGCGCGCTCCCTGCCCTACAAAGATCTACTTACACCT
CCCATAGTACATCCGCTTTCGCGACATCCATACCGACTGATAAAATCGAA
AGATGCTTTGGAACTGACTTTGCGCGAGGCAGGTGTAAGCATAGATGGGC
AGGCAACGCCTCTGACGTGTGTTTATTGTAATGGCGGTGTTGCATCCACA
GTTGTTATTTTTGTACTCAATCAGCTGTATGGCATGCGAACGAGTAATTT
TGATGGGTCCTGGAATGAGTGGGGGAAGCGGGAGGACTTTCCTGTTTCTT
CAGAAATGGACAAGTAAAGTTCAAACTGATTTGCTTTC
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Coding sequence (CDS) from alignment at CM002462.1:926061..927498-

>rna4126 ID=rna4126|Name=rna4126|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002462.1:926061..927498- (Nannochloropsis gaditana)
ATGTTAGGCGGCCGTCAGGCACTGAATCTTTCTCAGAGGTACCTCGCGTC
CATCGGGACGCATCTACTTCTCCTCTTCTTCGTCCGGCCGCATTTTCCGA
CTGCCATCATCTCCTTTGGAGTATGTGATGCCTTCGTATCGCAGTTTTCA
CCCAATGTACAATACGACGTCTCAAATTCATGGATATCGCTGTCGCGGCG
ACTGCACCAGCGTGGCAGGGACTTGGTTCCATTCTCATCAGGGGTCGCCC
CTGACCTGCAGGCGGCTAGTCGCAGCATCGATGTCCCAGACCTACCGGGA
CTTGTGACCACTGAATGGCTGGCAGACCATGTAGACGATGAAGACTTAGC
CATTCTCGACGTCCGCGGAGAAGTTGCTAAGGCCCCTGTCACGAATGGCA
CGCAAGAATCCGAATATATTGCTTTGAAGGGCGATTATGTCGATGCGCAT
ATTCCAAATGCGGCCTTCGTAGATTGGATCGATGACATCGCTTACACGGA
CGATGCCGGAGTTCCCGTTCAAATACTACCACTTGATGACTTTCGCGTGT
GCATGGAATCAAGAGGCGTGGGTTTGAGGAAGCGGGTCGTCATTTATGAC
AACGGTAATTTCCTTTTTGCCACAAGGCTGTGGTGGGCTTTGCGCATTGC
AGGGCATCAAGCGGTGGCTATCCTTGATGGTGGGTGGAACAAGTGGCTTG
CAGAAGACTGGCCTGTGACTGCCGACGCGCCGTGCCCCTTGAAAATAAAT
GAAGCATGGGAGAGTGAGTTTATAGCCACATCTGTCGACGGCGCAATGAT
CCCTTCCTTTCTTTCCTCCCGCGTGAACGCCAGTCAAGTCTTGCAGTTCT
GTCAGGAGGACTCTGGAAGTGAGAACGTGCAAATTATCGATGCACGCAGT
CGGGAGCAGTACATGGGAAGGATATCCCGCTCTTCACGCGCAGGACACAT
TCCCCGCGCGCGCTCCCTGCCCTACAAAGATCTACTTACACCTCCCATAG
TACATCCGCTTTCGCGACATCCATACCGACTGATAAAATCGAAAGATGCT
TTGGAACTGACTTTGCGCGAGGCAGGTGTAAGCATAGATGGGCAGGCAAC
GCCTCTGACGTGTGTTTATTGTAATGGCGGTGTTGCATCCACAGTTGTTA
TTTTTGTACTCAATCAGCTGTATGGCATGCGAACGAGTAATTTTGATGGG
TCCTGGAATGAGTGGGGGAAGCGGGAGGACTTTCCTGTTTCTTCAGAAAT
GGACAAGTAA
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Synonyms
Publications