EWM26636.1, cds4080 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM26636.1
Unique Name	cds4080
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002462.1:830237..830289 -
Alignment location	CM002462.1:830041..830195 -
Alignment location	CM002462.1:829716..829975 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM26636.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100001g22.8147.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:830237..830289 -
CM002462.1	supercontig	CM002462.1:830041..830195 -
CM002462.1	supercontig	CM002462.1:829716..829975 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM26636.1 vs. NCBI_GenBank
Match: gi|585108724|gb|EWM26636.1| (hypothetical protein Naga_100001g22 [Nannochloropsis gaditana])

HSP 1 Score: 327.02 bits (837), Expect = 1.486e-113
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0

Query:    1 MRADRWCHPRLWKYGNITHVKDVPCNGIPKRSPLNENIKTIQKMTSQHMTYAEHSSFTSTSFAIYYCCDCYGNDSCHDIGHQSGLLAHGDVCQYSVAQIRHCHNPYLVLALSTTDNHALRLLIQGHRHAYHILDAVGAKNIRAFTVSNVQGNRHK 155
            MRADRWCHPRLWKYGNITHVKDVPCNGIPKRSPLNENIKTIQKMTSQHMTYAEHSSFTSTSFAIYYCCDCYGNDSCHDIGHQSGLLAHGDVCQYSVAQIRHCHNPYLVLALSTTDNHALRLLIQGHRHAYHILDAVGAKNIRAFTVSNVQGNRHK
Sbjct:    1 MRADRWCHPRLWKYGNITHVKDVPCNGIPKRSPLNENIKTIQKMTSQHMTYAEHSSFTSTSFAIYYCCDCYGNDSCHDIGHQSGLLAHGDVCQYSVAQIRHCHNPYLVLALSTTDNHALRLLIQGHRHAYHILDAVGAKNIRAFTVSNVQGNRHK 155

The following BLAST results are available for this feature:

BLAST of EWM26636.1 vs. NCBI_GenBank

BLAST of EWM26636.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585108724\|gb\|EWM26636.1\|	1.486e-113	100.00	hypothetical protein Naga_100001g22 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4090	rna4090	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications