rna4090, rna4090 (mRNA) Nannochloropsis gaditana

Overview
Namerna4090
Unique Namerna4090
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationCM002462.1:829716..830289 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100001g22.8147.mrna
Orig protein idgnl|cribi|Naga_100001g22.8147
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:829716..830289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100001g22gene3936Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4090rna4090-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26636.1cds4080Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4090 ID=rna4090|Name=rna4090|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
ATGAAACAGCTTCAGACACTTGTGCGGCAAGGGCGAAAAGTTCTTGCCAA
CATGTATCTACGTGAGATCCTGACGACGCGAGACACGTGCTTCTTCTTCC
AACCGCCATCAATGAACTCTGAGACCGTGCTGCAGATGAAACAAAAATTC
CGCGCTCAGACAGGCCTTACCTGGCGATCTTTCTCGCCTGCAGTGTCTCA
GCACTATCTGAAAGACAGCCCTTACAAGGCATTAATTCGACTTCTGCAAG
GACCCATGATTGTGGCGTACCCGGAAGAGATTGCGGACCGTGCCATTCCT
ACTCGTGCAGTCCTTGGACTTGCGAAAGAATTCAATTTAGGTATACTCGG
AGCCAAATGGCAAAATAACTTTCTATCAGCGGCAGATCTGAAAGAACTGA
AAGCAGAGGGTGTGTACAGGGGGGAGGTTCTGGGATTGTTCGCAACCTAT
CAGCGAGAAGTAGTCCAAGCCCTTAATATGCACCACGAGAAAGAGAGTGG
AATACAAACGAAGGTGGAAGAGGGAGGAGGTGGAAACAGGGGGGCAAATT
GA
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protein sequence of rna4090

>rna4090-protein ID=rna4090-protein|Name=rna4090|organism=Nannochloropsis gaditana|type=polypeptide|length=155bp
MRADRWCHPRLWKYGNITHVKDVPCNGIPKRSPLNENIKTIQKMTSQHMT
YAEHSSFTSTSFAIYYCCDCYGNDSCHDIGHQSGLLAHGDVCQYSVAQIR
HCHNPYLVLALSTTDNHALRLLIQGHRHAYHILDAVGAKNIRAFTVSNVQ
GNRHK
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mRNA from alignment at CM002462.1:829716..830289-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4090 ID=rna4090|Name=rna4090|organism=Nannochloropsis gaditana|type=mRNA|length=574bp|location=Sequence derived from alignment at CM002462.1:829716..830289- (Nannochloropsis gaditana)
ATGAGAGCGGACCGCTGGTGTCATCCTAGGCTATGGAAATATGGAAATAT
AACGTTATACTGCACTCTTACAGCTTTTAGCTTTATTCTATCAGACACGT
AAAAGATGTCCCTTGCAATGGCATTCCAAAACGTAGCCCCCTCAATGAAA
ACATCAAGACGATCCAAAAGATGACATCGCAGCACATGACGTATGCTGAA
CACTCTTCCTTCACCAGTACATCATTCGCCATTTATTACTGCTGTGACTG
TCTTTTCCAAAATCTTGTACCGAGCAACAAAGTCACCTTTGCTTACATGT
TGTCCTGAGGGGAGGCTACGGAAATGATAGTTGCCATGATATTGGACATC
AGTCAGGCCTGCTAGCCCATGGTGATGTTTGCCAGTACTCCGTGGCGCAA
ATTCGGCATTGTCACAATCCGTATCTAGTTCTCGCGCTTTCGACCACAGA
TAACCATGCCCTCCGTTTGTTGATACAAGGCCACCGTCACGCTTATCACA
TCTTAGACGCGGTAGGGGCGAAAAACATAAGGGCATTTACAGTTTCTAAT
GTGCAGGGGAATAGACATAAATAA
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Coding sequence (CDS) from alignment at CM002462.1:829716..830289-

>rna4090 ID=rna4090|Name=rna4090|organism=Nannochloropsis gaditana|type=CDS|length=1404bp|location=Sequence derived from alignment at CM002462.1:829716..830289- (Nannochloropsis gaditana)
GCTACGGAAATGATAGTTGCCATGATATTGGACATCAGTCAGGCCTGCTA
GCCCATGGTGATGTTTGCCAGTACTCCGTGGCGCAAATTCGGCATTGTCA
CAATCCGTATCTAGTTCTCGCGCTTTCGACCACAGATAACCATGCCCTCC
GTTTGTTGATACAAGGCCACCGTCACGCTTATCACATCTTAGACGCGGTA
GGGGCGAAAAACATAAGGGCATTTACAGTTTCTAATGTGCAGGGGAATAG
ACATAAATAAACACGTAAAAGATGTCCCTTGCAATGGCATTCCAAAACGT
AGCCCCCTCAATGAAAACATCAAGACGATCCAAAAGATGACATCGCAGCA
CATGACGTATGCTGAACACTCTTCCTTCACCAGTACATCATTCGCCATTT
ATTACTGCTGTGACTATGAGAGCGGACCGCTGGTGTCATCCTAGGCTATG
GAAATATGGAAATATAACGCTACGGAAATGATAGTTGCCATGATATTGGA
CATCAGTCAGGCCTGCTAGCCCATGGTGATGTTTGCCAGTACTCCGTGGC
GCAAATTCGGCATTGTCACAATCCGTATCTAGTTCTCGCGCTTTCGACCA
CAGATAACCATGCCCTCCGTTTGTTGATACAAGGCCACCGTCACGCTTAT
CACATCTTAGACGCGGTAGGGGCGAAAAACATAAGGGCATTTACAGTTTC
TAATGTGCAGGGGAATAGACATAAATAAACACGTAAAAGATGTCCCTTGC
AATGGCATTCCAAAACGTAGCCCCCTCAATGAAAACATCAAGACGATCCA
AAAGATGACATCGCAGCACATGACGTATGCTGAACACTCTTCCTTCACCA
GTACATCATTCGCCATTTATTACTGCTGTGACTATGAGAGCGGACCGCTG
GTGTCATCCTAGGCTATGGAAATATGGAAATATAACGCTACGGAAATGAT
AGTTGCCATGATATTGGACATCAGTCAGGCCTGCTAGCCCATGGTGATGT
TTGCCAGTACTCCGTGGCGCAAATTCGGCATTGTCACAATCCGTATCTAG
TTCTCGCGCTTTCGACCACAGATAACCATGCCCTCCGTTTGTTGATACAA
GGCCACCGTCACGCTTATCACATCTTAGACGCGGTAGGGGCGAAAAACAT
AAGGGCATTTACAGTTTCTAATGTGCAGGGGAATAGACATAAATAAACAC
GTAAAAGATGTCCCTTGCAATGGCATTCCAAAACGTAGCCCCCTCAATGA
AAACATCAAGACGATCCAAAAGATGACATCGCAGCACATGACGTATGCTG
AACACTCTTCCTTCACCAGTACATCATTCGCCATTTATTACTGCTGTGAC
TATGAGAGCGGACCGCTGGTGTCATCCTAGGCTATGGAAATATGGAAATA
TAAC
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Synonyms
Publications